BDGP Sequence Production Resources |
Search the DGRC for RH15319
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 153 |
Well: | 19 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Proc-RA |
Protein status: | RH15319.pep: gold |
Preliminary Size: | 770 |
Sequenced Size: | 2017 |
Gene | Date | Evidence |
---|---|---|
CG7105 | 2002-01-01 | Sim4 clustering to Release 2 |
CG7105 | 2002-05-18 | Blastp of sequenced clone |
CG7105 | 2003-01-01 | Sim4 clustering to Release 3 |
Proct | 2008-04-29 | Release 5.5 accounting |
Proct | 2008-08-15 | Release 5.9 accounting |
Proct | 2008-12-18 | 5.12 accounting |
2017 bp (2017 high quality bases) assembled on 2002-05-18
GenBank Submission: AY119161
> RH15319.complete GATTCGTAGGGCGGAATATCCGGGCCGTGGTCGAAGGCGACGGCGGCGTC CTGGCGTCATCTCCAAATCTCGGCCAGTGCCGCAATTTTGGCTATAAATA CAAATGTCGGCACGCAGCTTGGCTTAAACTTACATTGTTATCCTAGTTCA CAACATCGCTCGGGGTCTCCTCAACTTCGCCGAACAAAACACATTCGCTA CGTGACGTTGTTAGGACGGAATACTTAGCCACCCACTCGCGCCAGGACAA CTCCGTAACTTGAAACTCCATCGAAAAACACAAACCCCCGGTGCCACGCC CCCAACCAGGACAACAATGGGAGTGCCACGGAGTCACGGAACTGGAATTG GCTGTGGAAGTGGACACAGGTGGCTCTTGGTTTGGATGACGGTGCTGCTC CTGGTCGTCCCACCGCATCTGGTCGACGGCCGTTACCTGCCGACAAGGTC GCATGGCGACGATTTGGACAAGTTGCGTGAACTGATGCTGCAGATTTTGG AGTTGAGCAATGAGGACCCACAACAGCAGCAGCAGCAGCAGCAGCAGCAG CAACACCCACAGCTGCGTCTCCACAATGAGGCCACCGGTGGCAGCAGCAG CAGCAGCAACATCAACAATCCACGCGTGTCCAACGGCAACTCTAATGCCG CCTGGCTGCAGAAACTGAGTGCCATGGGTGCCCTGGACGAGTTGGGCGGA GATGGAGCCCGGTTCGGGCCCAACTATGGGCGTTATTAAGCCATCTGGGA ACACCTGACGACAACAGCCACCACGACTATGGACACGGAAACTAGGGGCC GGGGGAAGCCATGTTGCAAGCAAAAATGTTCTGGGTCCGAAAAAGGGGAT ACAATACAATAGTGTCGGAAATGTTCACAGGATTAAAATCCAATTGAAAC GAAAGCAAAGTGCGTGAAAATGGACAAATAAATGGAGCAAAGGATTGTCC TGGAATTCGCTTTGAAGTACTTTGAATGAGCTTGTGCCATTTTGAAATGT TGTGAAGGACACTTTGCAAAATCACTTTCAAATGCTTGAGTCCTTTTACA AAATTATATTAGCGGACCCTTTTGATTCCTCCATATGCAAATGTTAATTT GATTATACTCTCTTTAAGTTCATTTATTAGTATTTATTACAAAAAACTAG TCAATTTCTTTAAGCAGGCTCCTTGCTAAAGAATATACATAAGTCCAATA ATATTTTTCTCATAACACAAGGAATATTTGCAAAGTTTTTTGCCCAGCAG AGAAGTGTGTCTTAGAAACACACTTTTGAAATGTTTGTATACCATTCAAA AAGTTTAAACATGGTTTTCCCTCTACCCCGAACTGAATTACACTTACTGG TTTAGAATGCAGAAATTCAGAATTGAAATGAAACTGGAAAACTTAAAAGG ACATAAAACAGTTCCTATGCTAGAACAATAATTTTTAAAATCCTTTGGGT AAGCCCGAAGTGTAAAATGTACCTATATGTATGTACCTATGTGTTGTAGA GCAACCCCGTCCCTCTGAAAAAGAAAAACTCTGAAAAAAAACCCTTAATG GTGTAGACTAAGTGCGGATTTTCAACTTCTTTTTGCGCGGTCAAACAAGA AATAAAAAAAAATTAAAAGTGCGATAAAATTGTAAATATTTTACCCCGAA AACTTCCACAACCGCCCCACGAACAATAATAACTGGAGTTTTAATGGGCC CCAAGGCTGGCCAGGCATATGAAGATATATTGTAAAACGTATTGTGTATT TATAAATTATACTACTCCCAACTAACCTCCACTAGATGGCCTCCGCTGGA AGATGGGCCCAAGTTTAATGCGATTTCGGTTGAGACTTTATGGCCAGCAA CGTTTCGAGGGAGATACATATATATGTACTTATACACACTACTTAATTCG TATCCATATATAAATGTACATTTAATTGTTGTTAACTTACGTTATCTTTA TTACTTATGACTCGCCGCAGAAGCAACAATAAAAGAAATCATTTTCAATG CAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Proct-RA | 2084 | Proct-RA | 56..2057 | 2..2003 | 10010 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 7863715..7865227 | 2001..489 | 7550 | 99.9 | Minus |
chr2L | 23010047 | chr2L | 7870221..7870505 | 286..2 | 1425 | 100 | Minus |
chr2L | 23010047 | chr2L | 7869317..7869523 | 493..287 | 1020 | 99.5 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 7864640..7866154 | 2003..489 | 7575 | 100 | Minus |
2L | 23513712 | 2L | 7871171..7871455 | 286..2 | 1425 | 100 | Minus |
2L | 23513712 | 2L | 7870267..7870473 | 493..287 | 1035 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 7864640..7866154 | 2003..489 | 7575 | 100 | Minus |
2L | 23513712 | 2L | 7871171..7871455 | 286..2 | 1425 | 100 | Minus |
2L | 23513712 | 2L | 7870267..7870473 | 493..287 | 1035 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2587..2673 | 540..625 | 171 | 67.8 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 6900..6966 | 1858..1925 | 121 | 66.2 | Plus |
accord | 7404 | accord ACCORD 7404bp | 1351..1388 | 1755..1717 | 120 | 82.1 | Minus |
Dbuz\Kepler | 722 | Dbuz\Kepler KEPLER 722bp | 421..483 | 1858..1920 | 117 | 65.1 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 7863715..7865222 | 494..2001 | 97 | <- | Minus |
chr2L | 7869317..7869523 | 287..493 | 99 | <- | Minus |
chr2L | 7870221..7870505 | 1..286 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Proct-RA | 1..423 | 317..739 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Proct-RA | 1..423 | 317..739 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Proct-RA | 1..423 | 317..739 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Smr-RC | 589..605 | 521..538 | 94 | -> | Plus |
Smr-RC | 751..767 | 539..555 | 100 | == | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Proc-RA | 1..423 | 317..739 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Proct-RA | 1..1977 | 25..2001 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Proct-RA | 1..1977 | 25..2001 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Proct-RA | 1..1977 | 25..2001 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Proct-RA | 1..1977 | 25..2001 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Proc-RA | 1..1977 | 25..2001 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 7864642..7866149 | 494..2001 | 100 | <- | Minus |
2L | 7870267..7870473 | 287..493 | 100 | <- | Minus |
2L | 7871171..7871455 | 1..286 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 7864642..7866149 | 494..2001 | 100 | <- | Minus |
2L | 7870267..7870473 | 287..493 | 100 | <- | Minus |
2L | 7871171..7871455 | 1..286 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 7864642..7866149 | 494..2001 | 100 | <- | Minus |
2L | 7870267..7870473 | 287..493 | 100 | <- | Minus |
2L | 7871171..7871455 | 1..286 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 7864642..7866149 | 494..2001 | 100 | <- | Minus |
arm_2L | 7870267..7870473 | 287..493 | 100 | <- | Minus |
arm_2L | 7871171..7871455 | 1..286 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 7864642..7866149 | 494..2001 | 100 | <- | Minus |
2L | 7870267..7870473 | 287..493 | 100 | <- | Minus |
2L | 7871171..7871455 | 1..286 | 99 | Minus |
Translation from 316 to 738
> RH15319.hyp MGVPRSHGTGIGCGSGHRWLLVWMTVLLLVVPPHLVDGRYLPTRSHGDDL DKLRELMLQILELSNEDPQQQQQQQQQQQHPQLRLHNEATGGSSSSSNIN NPRVSNGNSNAAWLQKLSAMGALDELGGDGARFGPNYGRY*
Translation from 316 to 738
> RH15319.pep MGVPRSHGTGIGCGSGHRWLLVWMTVLLLVVPPHLVDGRYLPTRSHGDDL DKLRELMLQILELSNEDPQQQQQQQQQQQHPQLRLHNEATGGSSSSSNIN NPRVSNGNSNAAWLQKLSAMGALDELGGDGARFGPNYGRY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22831-PA | 154 | GF22831-PA | 31..154 | 17..140 | 372 | 83.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23498-PA | 145 | GG23498-PA | 19..145 | 17..140 | 501 | 95.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11555-PA | 125 | GH11555-PA | 37..125 | 36..140 | 246 | 64.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Proc-PB | 140 | CG7105-PB | 1..140 | 1..140 | 749 | 100 | Plus |
Proc-PA | 140 | CG7105-PA | 1..140 | 1..140 | 749 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17046-PA | 150 | GI17046-PA | 62..150 | 36..140 | 237 | 61 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL19484-PA | 141 | GL19484-PA | 2..141 | 8..140 | 395 | 72.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20106-PA | 141 | GA20106-PA | 2..141 | 8..140 | 395 | 72.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13280-PA | 137 | GM13280-PA | 1..137 | 1..140 | 660 | 94.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22461-PA | 138 | GD22461-PA | 1..138 | 1..140 | 683 | 95.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10067-PA | 195 | GJ10067-PA | 111..195 | 36..140 | 254 | 62 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK23968-PA | 126 | GK23968-PA | 13..126 | 20..140 | 281 | 64.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE18327-PA | 149 | GE18327-PA | 1..149 | 1..140 | 461 | 86.6 | Plus |