Clone RH15319 Report

Search the DGRC for RH15319

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:153
Well:19
Vector:pFlc-1
Associated Gene/TranscriptProc-RA
Protein status:RH15319.pep: gold
Preliminary Size:770
Sequenced Size:2017

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7105 2002-01-01 Sim4 clustering to Release 2
CG7105 2002-05-18 Blastp of sequenced clone
CG7105 2003-01-01 Sim4 clustering to Release 3
Proct 2008-04-29 Release 5.5 accounting
Proct 2008-08-15 Release 5.9 accounting
Proct 2008-12-18 5.12 accounting

Clone Sequence Records

RH15319.complete Sequence

2017 bp (2017 high quality bases) assembled on 2002-05-18

GenBank Submission: AY119161

> RH15319.complete
GATTCGTAGGGCGGAATATCCGGGCCGTGGTCGAAGGCGACGGCGGCGTC
CTGGCGTCATCTCCAAATCTCGGCCAGTGCCGCAATTTTGGCTATAAATA
CAAATGTCGGCACGCAGCTTGGCTTAAACTTACATTGTTATCCTAGTTCA
CAACATCGCTCGGGGTCTCCTCAACTTCGCCGAACAAAACACATTCGCTA
CGTGACGTTGTTAGGACGGAATACTTAGCCACCCACTCGCGCCAGGACAA
CTCCGTAACTTGAAACTCCATCGAAAAACACAAACCCCCGGTGCCACGCC
CCCAACCAGGACAACAATGGGAGTGCCACGGAGTCACGGAACTGGAATTG
GCTGTGGAAGTGGACACAGGTGGCTCTTGGTTTGGATGACGGTGCTGCTC
CTGGTCGTCCCACCGCATCTGGTCGACGGCCGTTACCTGCCGACAAGGTC
GCATGGCGACGATTTGGACAAGTTGCGTGAACTGATGCTGCAGATTTTGG
AGTTGAGCAATGAGGACCCACAACAGCAGCAGCAGCAGCAGCAGCAGCAG
CAACACCCACAGCTGCGTCTCCACAATGAGGCCACCGGTGGCAGCAGCAG
CAGCAGCAACATCAACAATCCACGCGTGTCCAACGGCAACTCTAATGCCG
CCTGGCTGCAGAAACTGAGTGCCATGGGTGCCCTGGACGAGTTGGGCGGA
GATGGAGCCCGGTTCGGGCCCAACTATGGGCGTTATTAAGCCATCTGGGA
ACACCTGACGACAACAGCCACCACGACTATGGACACGGAAACTAGGGGCC
GGGGGAAGCCATGTTGCAAGCAAAAATGTTCTGGGTCCGAAAAAGGGGAT
ACAATACAATAGTGTCGGAAATGTTCACAGGATTAAAATCCAATTGAAAC
GAAAGCAAAGTGCGTGAAAATGGACAAATAAATGGAGCAAAGGATTGTCC
TGGAATTCGCTTTGAAGTACTTTGAATGAGCTTGTGCCATTTTGAAATGT
TGTGAAGGACACTTTGCAAAATCACTTTCAAATGCTTGAGTCCTTTTACA
AAATTATATTAGCGGACCCTTTTGATTCCTCCATATGCAAATGTTAATTT
GATTATACTCTCTTTAAGTTCATTTATTAGTATTTATTACAAAAAACTAG
TCAATTTCTTTAAGCAGGCTCCTTGCTAAAGAATATACATAAGTCCAATA
ATATTTTTCTCATAACACAAGGAATATTTGCAAAGTTTTTTGCCCAGCAG
AGAAGTGTGTCTTAGAAACACACTTTTGAAATGTTTGTATACCATTCAAA
AAGTTTAAACATGGTTTTCCCTCTACCCCGAACTGAATTACACTTACTGG
TTTAGAATGCAGAAATTCAGAATTGAAATGAAACTGGAAAACTTAAAAGG
ACATAAAACAGTTCCTATGCTAGAACAATAATTTTTAAAATCCTTTGGGT
AAGCCCGAAGTGTAAAATGTACCTATATGTATGTACCTATGTGTTGTAGA
GCAACCCCGTCCCTCTGAAAAAGAAAAACTCTGAAAAAAAACCCTTAATG
GTGTAGACTAAGTGCGGATTTTCAACTTCTTTTTGCGCGGTCAAACAAGA
AATAAAAAAAAATTAAAAGTGCGATAAAATTGTAAATATTTTACCCCGAA
AACTTCCACAACCGCCCCACGAACAATAATAACTGGAGTTTTAATGGGCC
CCAAGGCTGGCCAGGCATATGAAGATATATTGTAAAACGTATTGTGTATT
TATAAATTATACTACTCCCAACTAACCTCCACTAGATGGCCTCCGCTGGA
AGATGGGCCCAAGTTTAATGCGATTTCGGTTGAGACTTTATGGCCAGCAA
CGTTTCGAGGGAGATACATATATATGTACTTATACACACTACTTAATTCG
TATCCATATATAAATGTACATTTAATTGTTGTTAACTTACGTTATCTTTA
TTACTTATGACTCGCCGCAGAAGCAACAATAAAAGAAATCATTTTCAATG
CAAAAAAAAAAAAAAAA

RH15319.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:05:21
Subject Length Description Subject Range Query Range Score Percent Strand
Proct-RA 2084 Proct-RA 56..2057 2..2003 10010 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:37:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 7863715..7865227 2001..489 7550 99.9 Minus
chr2L 23010047 chr2L 7870221..7870505 286..2 1425 100 Minus
chr2L 23010047 chr2L 7869317..7869523 493..287 1020 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:23:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:37:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7864640..7866154 2003..489 7575 100 Minus
2L 23513712 2L 7871171..7871455 286..2 1425 100 Minus
2L 23513712 2L 7870267..7870473 493..287 1035 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:36:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7864640..7866154 2003..489 7575 100 Minus
2L 23513712 2L 7871171..7871455 286..2 1425 100 Minus
2L 23513712 2L 7870267..7870473 493..287 1035 100 Minus
Blast to na_te.dros performed 2019-03-16 09:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2587..2673 540..625 171 67.8 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 6900..6966 1858..1925 121 66.2 Plus
accord 7404 accord ACCORD 7404bp 1351..1388 1755..1717 120 82.1 Minus
Dbuz\Kepler 722 Dbuz\Kepler KEPLER 722bp 421..483 1858..1920 117 65.1 Plus

RH15319.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:37:58 Download gff for RH15319.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 7863715..7865222 494..2001 97 <- Minus
chr2L 7869317..7869523 287..493 99 <- Minus
chr2L 7870221..7870505 1..286 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:42:12 Download gff for RH15319.complete
Subject Subject Range Query Range Percent Splice Strand
Proct-RA 1..423 317..739 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:47:37 Download gff for RH15319.complete
Subject Subject Range Query Range Percent Splice Strand
Proct-RA 1..423 317..739 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:03:20 Download gff for RH15319.complete
Subject Subject Range Query Range Percent Splice Strand
Proct-RA 1..423 317..739 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:40:02 Download gff for RH15319.complete
Subject Subject Range Query Range Percent Splice Strand
Smr-RC 589..605 521..538 94 -> Plus
Smr-RC 751..767 539..555 100 == Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:15:09 Download gff for RH15319.complete
Subject Subject Range Query Range Percent Splice Strand
Proc-RA 1..423 317..739 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:23:52 Download gff for RH15319.complete
Subject Subject Range Query Range Percent Splice Strand
Proct-RA 1..1977 25..2001 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:47:36 Download gff for RH15319.complete
Subject Subject Range Query Range Percent Splice Strand
Proct-RA 1..1977 25..2001 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:03:20 Download gff for RH15319.complete
Subject Subject Range Query Range Percent Splice Strand
Proct-RA 1..1977 25..2001 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:40:03 Download gff for RH15319.complete
Subject Subject Range Query Range Percent Splice Strand
Proct-RA 1..1977 25..2001 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:15:09 Download gff for RH15319.complete
Subject Subject Range Query Range Percent Splice Strand
Proc-RA 1..1977 25..2001 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:37:58 Download gff for RH15319.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7864642..7866149 494..2001 100 <- Minus
2L 7870267..7870473 287..493 100 <- Minus
2L 7871171..7871455 1..286 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:37:58 Download gff for RH15319.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7864642..7866149 494..2001 100 <- Minus
2L 7870267..7870473 287..493 100 <- Minus
2L 7871171..7871455 1..286 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:37:58 Download gff for RH15319.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7864642..7866149 494..2001 100 <- Minus
2L 7870267..7870473 287..493 100 <- Minus
2L 7871171..7871455 1..286 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:03:20 Download gff for RH15319.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7864642..7866149 494..2001 100 <- Minus
arm_2L 7870267..7870473 287..493 100 <- Minus
arm_2L 7871171..7871455 1..286 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:12:21 Download gff for RH15319.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7864642..7866149 494..2001 100 <- Minus
2L 7870267..7870473 287..493 100 <- Minus
2L 7871171..7871455 1..286 99   Minus

RH15319.hyp Sequence

Translation from 316 to 738

> RH15319.hyp
MGVPRSHGTGIGCGSGHRWLLVWMTVLLLVVPPHLVDGRYLPTRSHGDDL
DKLRELMLQILELSNEDPQQQQQQQQQQQHPQLRLHNEATGGSSSSSNIN
NPRVSNGNSNAAWLQKLSAMGALDELGGDGARFGPNYGRY*

RH15319.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:45:43
Subject Length Description Subject Range Query Range Score Percent Strand
Proc-PB 140 CG7105-PB 1..140 1..140 749 100 Plus
Proc-PA 140 CG7105-PA 1..140 1..140 749 100 Plus

RH15319.pep Sequence

Translation from 316 to 738

> RH15319.pep
MGVPRSHGTGIGCGSGHRWLLVWMTVLLLVVPPHLVDGRYLPTRSHGDDL
DKLRELMLQILELSNEDPQQQQQQQQQQQHPQLRLHNEATGGSSSSSNIN
NPRVSNGNSNAAWLQKLSAMGALDELGGDGARFGPNYGRY*

RH15319.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:11:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22831-PA 154 GF22831-PA 31..154 17..140 372 83.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:11:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23498-PA 145 GG23498-PA 19..145 17..140 501 95.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:11:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11555-PA 125 GH11555-PA 37..125 36..140 246 64.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:16:18
Subject Length Description Subject Range Query Range Score Percent Strand
Proc-PB 140 CG7105-PB 1..140 1..140 749 100 Plus
Proc-PA 140 CG7105-PA 1..140 1..140 749 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:11:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17046-PA 150 GI17046-PA 62..150 36..140 237 61 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:11:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19484-PA 141 GL19484-PA 2..141 8..140 395 72.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:11:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20106-PA 141 GA20106-PA 2..141 8..140 395 72.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:12:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13280-PA 137 GM13280-PA 1..137 1..140 660 94.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:12:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22461-PA 138 GD22461-PA 1..138 1..140 683 95.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:12:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10067-PA 195 GJ10067-PA 111..195 36..140 254 62 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:12:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23968-PA 126 GK23968-PA 13..126 20..140 281 64.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:12:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18327-PA 149 GE18327-PA 1..149 1..140 461 86.6 Plus