BDGP Sequence Production Resources |
Search the DGRC for RH15778
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 157 |
Well: | 78 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Vamp7-RA |
Protein status: | RH15778.pep: gold |
Preliminary Size: | 941 |
Sequenced Size: | 1117 |
Gene | Date | Evidence |
---|---|---|
CG1599 | 2001-12-17 | Blastp of sequenced clone |
CG1599 | 2002-01-01 | Sim4 clustering to Release 2 |
CG1599 | 2003-01-01 | Sim4 clustering to Release 3 |
CG1599 | 2008-04-29 | Release 5.5 accounting |
CG1599 | 2008-08-15 | Release 5.9 accounting |
CG1599 | 2008-12-18 | 5.12 accounting |
1117 bp (1117 high quality bases) assembled on 2001-12-17
GenBank Submission: AY071695
> RH15778.complete GCTTCCACCTCTAATTTTATAACTGCATCGAAGCGTCAGCAATTGTTGTT ATTTGTAATGCAAAAATCGAGCTAATTCCACGGTATTGTGATGTTTTTAT TGTGTTCGGCAAAAGCAATTGAAAATCGATAATAACTTAAGCCGCTTACC ACAAAATGTAAATCTGCAGTTGCGCTATCAACTCGAGGCGGATCTAATTG GATAAACAAAGCAAAATCCGAGAGCACGTCATCATTGACGGATCGTCGGC TCATTCCCCGATAAGCAAAACAAAGCAGTAGCCTGAGGAGCTGAACAACC GCGCCCTTAGCAAAGGAGGATCTGTGGCACCATGCCGATACTATATAGTG TGATATCGCGGGGCACCACAGTGCTGGCGAAGTTTGCGGAGTGCGTCGGC AACTTTGCCGAAGTGACGGAGCACATAATCGGACGGATCGGGGTGCATAA CCACAAGATGACCTACACACACGGAGACTACCTGATCCACTACACCTGCG AGAACAAACTGGTCTACATGTGCATCACCGACAACGAGTTCGAACGGTCG CGGGCCTTCCTCTTCTTGGCGGATATCAAGCAGAAGTTTATCCAGACTTA CGGCCTACAGGTGGCCACCGCCATCGCCTACTCCATGAACACCGAGTTCT CCAAGATCCTGGCCCAGCAGATGGTCTATTTCAGTCAGTCCCGGGAGGTG GACACCATTTCGCGAGTACATGGTCAGATTGACGAGCTTAAAGACATTAT GGTTAAGAATATTGACAGCTTGCGGGATCGCGGCGAGAAACTAGAGCTGC TCGTCAACAAGACCGAAAACTTGAGCAATAATTCCGTTGCATTCCGTAAG GCCTCCCGAAATTTGGCTCGTCAAATGTTTTGGAAGAACATCCGCGTCTA CGTGGTGGTGGGTCTGGTGATAACCTTCATCGTTTACGTGATTGTGAGCA TGGCCTGTGGTGGCCTCGCTTGGCAGTCCTGTGTTTAGGACAAGCTTTAA AGTTGTTTATATTGTTATAGGCTCATAACACATGTATATTTGCATATAAA ACTCTACAGTACTCTCATCTATGTTCTATGTAATAAACTTCAATGTATAC CGAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG1599-RA | 1107 | CG1599-RA | 1..1101 | 2..1102 | 5490 | 99.9 | Plus |
CG1599.a | 1206 | CG1599.a | 97..1193 | 2..1102 | 5405 | 99.5 | Plus |
CG1599.b | 1164 | CG1599.b | 271..1158 | 215..1102 | 4425 | 99.8 | Plus |
CG1599.b | 1164 | CG1599.b | 4..212 | 2..210 | 1045 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 5729322..5729643 | 536..215 | 1595 | 99.7 | Minus |
chr2R | 21145070 | chr2R | 5728556..5728825 | 1102..833 | 1350 | 100 | Minus |
chr2R | 21145070 | chr2R | 5729016..5729244 | 764..536 | 1145 | 100 | Minus |
chr2R | 21145070 | chr2R | 5729773..5729985 | 214..2 | 1065 | 100 | Minus |
chr2R | 21145070 | chr2R | 5728884..5728952 | 832..764 | 345 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 9841846..9842167 | 536..215 | 1595 | 99.7 | Minus |
2R | 25286936 | 2R | 9841080..9841349 | 1102..833 | 1350 | 100 | Minus |
2R | 25286936 | 2R | 9841540..9841768 | 764..536 | 1145 | 100 | Minus |
2R | 25286936 | 2R | 9842297..9842509 | 214..2 | 1065 | 100 | Minus |
2R | 25286936 | 2R | 9841408..9841476 | 832..764 | 345 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 9843045..9843366 | 536..215 | 1595 | 99.6 | Minus |
2R | 25260384 | 2R | 9842279..9842548 | 1102..833 | 1350 | 100 | Minus |
2R | 25260384 | 2R | 9842739..9842967 | 764..536 | 1145 | 100 | Minus |
2R | 25260384 | 2R | 9843496..9843708 | 214..2 | 1065 | 100 | Minus |
2R | 25260384 | 2R | 9842607..9842675 | 832..764 | 345 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 5728556..5728825 | 833..1102 | 100 | <- | Minus |
chr2R | 5728884..5728951 | 765..832 | 100 | <- | Minus |
chr2R | 5729016..5729244 | 536..764 | 100 | <- | Minus |
chr2R | 5729323..5729643 | 215..535 | 99 | <- | Minus |
chr2R | 5729773..5729985 | 1..214 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1599-RA | 1..657 | 332..988 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1599-RA | 1..657 | 332..988 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vamp7-RA | 1..657 | 332..988 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1599-RA | 1..657 | 332..988 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vamp7-RA | 1..657 | 332..988 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1599-RA | 1..1101 | 2..1102 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1599-RA | 1..1101 | 2..1102 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vamp7-RA | 1..1090 | 9..1102 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1599-RA | 1..1101 | 2..1102 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vamp7-RA | 1..1090 | 9..1102 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9841408..9841475 | 765..832 | 100 | <- | Minus |
2R | 9842297..9842509 | 1..214 | 99 | Minus | |
2R | 9841540..9841768 | 536..764 | 100 | <- | Minus |
2R | 9841847..9842167 | 215..535 | 99 | <- | Minus |
2R | 9841080..9841349 | 833..1102 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9841408..9841475 | 765..832 | 100 | <- | Minus |
2R | 9842297..9842509 | 1..214 | 99 | Minus | |
2R | 9841540..9841768 | 536..764 | 100 | <- | Minus |
2R | 9841847..9842167 | 215..535 | 99 | <- | Minus |
2R | 9841080..9841349 | 833..1102 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9841408..9841475 | 765..832 | 100 | <- | Minus |
2R | 9842297..9842509 | 1..214 | 99 | Minus | |
2R | 9841540..9841768 | 536..764 | 100 | <- | Minus |
2R | 9841847..9842167 | 215..535 | 99 | <- | Minus |
2R | 9841080..9841349 | 833..1102 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 5728585..5728854 | 833..1102 | 100 | <- | Minus |
arm_2R | 5728913..5728980 | 765..832 | 100 | <- | Minus |
arm_2R | 5729045..5729273 | 536..764 | 100 | <- | Minus |
arm_2R | 5729352..5729672 | 215..535 | 99 | <- | Minus |
arm_2R | 5729802..5730014 | 1..214 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9842279..9842548 | 833..1102 | 100 | <- | Minus |
2R | 9842607..9842674 | 765..832 | 100 | <- | Minus |
2R | 9842739..9842967 | 536..764 | 100 | <- | Minus |
2R | 9843046..9843366 | 215..535 | 99 | <- | Minus |
2R | 9843496..9843708 | 1..214 | 99 | Minus |
Translation from 331 to 987
> RH15778.pep MPILYSVISRGTTVLAKFAECVGNFAEVTEHIIGRIGVHNHKMTYTHGDY LIHYTCENKLVYMCITDNEFERSRAFLFLADIKQKFIQTYGLQVATAIAY SMNTEFSKILAQQMVYFSQSREVDTISRVHGQIDELKDIMVKNIDSLRDR GEKLELLVNKTENLSNNSVAFRKASRNLARQMFWKNIRVYVVVGLVITFI VYVIVSMACGGLAWQSCV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11075-PA | 218 | GF11075-PA | 1..218 | 1..218 | 1067 | 89.9 | Plus |
Dana\GF22107-PA | 211 | GF22107-PA | 32..206 | 24..204 | 186 | 29.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG25257-PA | 218 | GG25257-PA | 1..218 | 1..218 | 1163 | 99.1 | Plus |
Dere\GG12812-PA | 211 | GG12812-PA | 27..207 | 19..202 | 182 | 26.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21327-PA | 219 | GH21327-PA | 1..218 | 1..218 | 1077 | 89.4 | Plus |
Dgri\GH23283-PA | 148 | GH23283-PA | 1..144 | 1..144 | 713 | 89.6 | Plus |
Dgri\GH21329-PA | 108 | GH21329-PA | 35..107 | 146..218 | 355 | 89 | Plus |
Dgri\GH12353-PA | 211 | GH12353-PA | 27..207 | 19..202 | 184 | 26.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Vamp7-PC | 218 | CG1599-PC | 1..218 | 1..218 | 1118 | 100 | Plus |
Vamp7-PA | 218 | CG1599-PA | 1..218 | 1..218 | 1118 | 100 | Plus |
Sec22-PA | 211 | CG7359-PA | 43..207 | 35..202 | 191 | 28.4 | Plus |
Sec22-PB | 213 | CG7359-PB | 45..209 | 35..202 | 191 | 28.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20745-PA | 219 | GI20745-PA | 1..218 | 1..218 | 1075 | 93.1 | Plus |
Dmoj\GI15600-PA | 211 | GI15600-PA | 27..207 | 19..202 | 186 | 27 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20026-PA | 218 | GL20026-PA | 1..218 | 1..218 | 1005 | 93.1 | Plus |
Dper\GL14202-PA | 211 | GL14202-PA | 27..206 | 19..204 | 163 | 25.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14039-PA | 218 | GA14039-PA | 1..218 | 1..218 | 1007 | 93.1 | Plus |
Dpse\GA20293-PA | 211 | GA20293-PA | 27..206 | 19..204 | 163 | 25.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20575-PA | 218 | GM20575-PA | 1..218 | 1..218 | 1165 | 99.5 | Plus |
Dsec\GM19093-PA | 211 | GM19093-PA | 32..207 | 24..202 | 186 | 27.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10048-PA | 218 | GD10048-PA | 1..218 | 1..218 | 1165 | 99.5 | Plus |
Dsim\GD16531-PA | 211 | GD16531-PA | 32..207 | 24..202 | 186 | 27.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20482-PA | 219 | GJ20482-PA | 1..218 | 1..218 | 1054 | 91.3 | Plus |
Dvir\GJ15203-PA | 175 | GJ15203-PA | 43..165 | 35..158 | 142 | 28 | Plus |
Translation from 331 to 987
> RH15778.hyp MPILYSVISRGTTVLAKFAECVGNFAEVTEHIIGRIGVHNHKMTYTHGDY LIHYTCENKLVYMCITDNEFERSRAFLFLADIKQKFIQTYGLQVATAIAY SMNTEFSKILAQQMVYFSQSREVDTISRVHGQIDELKDIMVKNIDSLRDR GEKLELLVNKTENLSNNSVAFRKASRNLARQMFWKNIRVYVVVGLVITFI VYVIVSMACGGLAWQSCV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Vamp7-PC | 218 | CG1599-PC | 1..218 | 1..218 | 1118 | 100 | Plus |
Vamp7-PA | 218 | CG1599-PA | 1..218 | 1..218 | 1118 | 100 | Plus |
Sec22-PA | 211 | CG7359-PA | 43..207 | 35..202 | 191 | 28.4 | Plus |
Sec22-PB | 213 | CG7359-PB | 45..209 | 35..202 | 191 | 28.4 | Plus |