Clone RH15778 Report

Search the DGRC for RH15778

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:157
Well:78
Vector:pFlc-1
Associated Gene/TranscriptVamp7-RA
Protein status:RH15778.pep: gold
Preliminary Size:941
Sequenced Size:1117

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1599 2001-12-17 Blastp of sequenced clone
CG1599 2002-01-01 Sim4 clustering to Release 2
CG1599 2003-01-01 Sim4 clustering to Release 3
CG1599 2008-04-29 Release 5.5 accounting
CG1599 2008-08-15 Release 5.9 accounting
CG1599 2008-12-18 5.12 accounting

Clone Sequence Records

RH15778.complete Sequence

1117 bp (1117 high quality bases) assembled on 2001-12-17

GenBank Submission: AY071695

> RH15778.complete
GCTTCCACCTCTAATTTTATAACTGCATCGAAGCGTCAGCAATTGTTGTT
ATTTGTAATGCAAAAATCGAGCTAATTCCACGGTATTGTGATGTTTTTAT
TGTGTTCGGCAAAAGCAATTGAAAATCGATAATAACTTAAGCCGCTTACC
ACAAAATGTAAATCTGCAGTTGCGCTATCAACTCGAGGCGGATCTAATTG
GATAAACAAAGCAAAATCCGAGAGCACGTCATCATTGACGGATCGTCGGC
TCATTCCCCGATAAGCAAAACAAAGCAGTAGCCTGAGGAGCTGAACAACC
GCGCCCTTAGCAAAGGAGGATCTGTGGCACCATGCCGATACTATATAGTG
TGATATCGCGGGGCACCACAGTGCTGGCGAAGTTTGCGGAGTGCGTCGGC
AACTTTGCCGAAGTGACGGAGCACATAATCGGACGGATCGGGGTGCATAA
CCACAAGATGACCTACACACACGGAGACTACCTGATCCACTACACCTGCG
AGAACAAACTGGTCTACATGTGCATCACCGACAACGAGTTCGAACGGTCG
CGGGCCTTCCTCTTCTTGGCGGATATCAAGCAGAAGTTTATCCAGACTTA
CGGCCTACAGGTGGCCACCGCCATCGCCTACTCCATGAACACCGAGTTCT
CCAAGATCCTGGCCCAGCAGATGGTCTATTTCAGTCAGTCCCGGGAGGTG
GACACCATTTCGCGAGTACATGGTCAGATTGACGAGCTTAAAGACATTAT
GGTTAAGAATATTGACAGCTTGCGGGATCGCGGCGAGAAACTAGAGCTGC
TCGTCAACAAGACCGAAAACTTGAGCAATAATTCCGTTGCATTCCGTAAG
GCCTCCCGAAATTTGGCTCGTCAAATGTTTTGGAAGAACATCCGCGTCTA
CGTGGTGGTGGGTCTGGTGATAACCTTCATCGTTTACGTGATTGTGAGCA
TGGCCTGTGGTGGCCTCGCTTGGCAGTCCTGTGTTTAGGACAAGCTTTAA
AGTTGTTTATATTGTTATAGGCTCATAACACATGTATATTTGCATATAAA
ACTCTACAGTACTCTCATCTATGTTCTATGTAATAAACTTCAATGTATAC
CGAAAAAAAAAAAAAAA

RH15778.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:35:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG1599-RA 1107 CG1599-RA 1..1101 2..1102 5490 99.9 Plus
CG1599.a 1206 CG1599.a 97..1193 2..1102 5405 99.5 Plus
CG1599.b 1164 CG1599.b 271..1158 215..1102 4425 99.8 Plus
CG1599.b 1164 CG1599.b 4..212 2..210 1045 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:31:19
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 5729322..5729643 536..215 1595 99.7 Minus
chr2R 21145070 chr2R 5728556..5728825 1102..833 1350 100 Minus
chr2R 21145070 chr2R 5729016..5729244 764..536 1145 100 Minus
chr2R 21145070 chr2R 5729773..5729985 214..2 1065 100 Minus
chr2R 21145070 chr2R 5728884..5728952 832..764 345 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:23:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:31:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9841846..9842167 536..215 1595 99.7 Minus
2R 25286936 2R 9841080..9841349 1102..833 1350 100 Minus
2R 25286936 2R 9841540..9841768 764..536 1145 100 Minus
2R 25286936 2R 9842297..9842509 214..2 1065 100 Minus
2R 25286936 2R 9841408..9841476 832..764 345 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:03:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 9843045..9843366 536..215 1595 99.6 Minus
2R 25260384 2R 9842279..9842548 1102..833 1350 100 Minus
2R 25260384 2R 9842739..9842967 764..536 1145 100 Minus
2R 25260384 2R 9843496..9843708 214..2 1065 100 Minus
2R 25260384 2R 9842607..9842675 832..764 345 100 Minus
Blast to na_te.dros performed on 2019-03-15 20:31:18 has no hits.

RH15778.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:32:24 Download gff for RH15778.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 5728556..5728825 833..1102 100 <- Minus
chr2R 5728884..5728951 765..832 100 <- Minus
chr2R 5729016..5729244 536..764 100 <- Minus
chr2R 5729323..5729643 215..535 99 <- Minus
chr2R 5729773..5729985 1..214 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:42:16 Download gff for RH15778.complete
Subject Subject Range Query Range Percent Splice Strand
CG1599-RA 1..657 332..988 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:58:06 Download gff for RH15778.complete
Subject Subject Range Query Range Percent Splice Strand
CG1599-RA 1..657 332..988 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:14:45 Download gff for RH15778.complete
Subject Subject Range Query Range Percent Splice Strand
Vamp7-RA 1..657 332..988 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:22:51 Download gff for RH15778.complete
Subject Subject Range Query Range Percent Splice Strand
CG1599-RA 1..657 332..988 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:23:13 Download gff for RH15778.complete
Subject Subject Range Query Range Percent Splice Strand
Vamp7-RA 1..657 332..988 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:23:00 Download gff for RH15778.complete
Subject Subject Range Query Range Percent Splice Strand
CG1599-RA 1..1101 2..1102 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:58:06 Download gff for RH15778.complete
Subject Subject Range Query Range Percent Splice Strand
CG1599-RA 1..1101 2..1102 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:14:45 Download gff for RH15778.complete
Subject Subject Range Query Range Percent Splice Strand
Vamp7-RA 1..1090 9..1102 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:22:51 Download gff for RH15778.complete
Subject Subject Range Query Range Percent Splice Strand
CG1599-RA 1..1101 2..1102 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:23:13 Download gff for RH15778.complete
Subject Subject Range Query Range Percent Splice Strand
Vamp7-RA 1..1090 9..1102 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:32:24 Download gff for RH15778.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9841408..9841475 765..832 100 <- Minus
2R 9842297..9842509 1..214 99   Minus
2R 9841540..9841768 536..764 100 <- Minus
2R 9841847..9842167 215..535 99 <- Minus
2R 9841080..9841349 833..1102 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:32:24 Download gff for RH15778.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9841408..9841475 765..832 100 <- Minus
2R 9842297..9842509 1..214 99   Minus
2R 9841540..9841768 536..764 100 <- Minus
2R 9841847..9842167 215..535 99 <- Minus
2R 9841080..9841349 833..1102 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:32:24 Download gff for RH15778.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9841408..9841475 765..832 100 <- Minus
2R 9842297..9842509 1..214 99   Minus
2R 9841540..9841768 536..764 100 <- Minus
2R 9841847..9842167 215..535 99 <- Minus
2R 9841080..9841349 833..1102 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:14:45 Download gff for RH15778.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5728585..5728854 833..1102 100 <- Minus
arm_2R 5728913..5728980 765..832 100 <- Minus
arm_2R 5729045..5729273 536..764 100 <- Minus
arm_2R 5729352..5729672 215..535 99 <- Minus
arm_2R 5729802..5730014 1..214 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:57:51 Download gff for RH15778.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9842279..9842548 833..1102 100 <- Minus
2R 9842607..9842674 765..832 100 <- Minus
2R 9842739..9842967 536..764 100 <- Minus
2R 9843046..9843366 215..535 99 <- Minus
2R 9843496..9843708 1..214 99   Minus

RH15778.pep Sequence

Translation from 331 to 987

> RH15778.pep
MPILYSVISRGTTVLAKFAECVGNFAEVTEHIIGRIGVHNHKMTYTHGDY
LIHYTCENKLVYMCITDNEFERSRAFLFLADIKQKFIQTYGLQVATAIAY
SMNTEFSKILAQQMVYFSQSREVDTISRVHGQIDELKDIMVKNIDSLRDR
GEKLELLVNKTENLSNNSVAFRKASRNLARQMFWKNIRVYVVVGLVITFI
VYVIVSMACGGLAWQSCV*

RH15778.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:24:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11075-PA 218 GF11075-PA 1..218 1..218 1067 89.9 Plus
Dana\GF22107-PA 211 GF22107-PA 32..206 24..204 186 29.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:24:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25257-PA 218 GG25257-PA 1..218 1..218 1163 99.1 Plus
Dere\GG12812-PA 211 GG12812-PA 27..207 19..202 182 26.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:24:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21327-PA 219 GH21327-PA 1..218 1..218 1077 89.4 Plus
Dgri\GH23283-PA 148 GH23283-PA 1..144 1..144 713 89.6 Plus
Dgri\GH21329-PA 108 GH21329-PA 35..107 146..218 355 89 Plus
Dgri\GH12353-PA 211 GH12353-PA 27..207 19..202 184 26.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:05:04
Subject Length Description Subject Range Query Range Score Percent Strand
Vamp7-PC 218 CG1599-PC 1..218 1..218 1118 100 Plus
Vamp7-PA 218 CG1599-PA 1..218 1..218 1118 100 Plus
Sec22-PA 211 CG7359-PA 43..207 35..202 191 28.4 Plus
Sec22-PB 213 CG7359-PB 45..209 35..202 191 28.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:24:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20745-PA 219 GI20745-PA 1..218 1..218 1075 93.1 Plus
Dmoj\GI15600-PA 211 GI15600-PA 27..207 19..202 186 27 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:24:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20026-PA 218 GL20026-PA 1..218 1..218 1005 93.1 Plus
Dper\GL14202-PA 211 GL14202-PA 27..206 19..204 163 25.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:24:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14039-PA 218 GA14039-PA 1..218 1..218 1007 93.1 Plus
Dpse\GA20293-PA 211 GA20293-PA 27..206 19..204 163 25.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:24:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20575-PA 218 GM20575-PA 1..218 1..218 1165 99.5 Plus
Dsec\GM19093-PA 211 GM19093-PA 32..207 24..202 186 27.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:24:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10048-PA 218 GD10048-PA 1..218 1..218 1165 99.5 Plus
Dsim\GD16531-PA 211 GD16531-PA 32..207 24..202 186 27.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:24:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20482-PA 219 GJ20482-PA 1..218 1..218 1054 91.3 Plus
Dvir\GJ15203-PA 175 GJ15203-PA 43..165 35..158 142 28 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:24:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20965-PA 219 GK20965-PA 1..218 1..218 1037 85.3 Plus
Dwil\GK24963-PA 211 GK24963-PA 57..207 48..202 171 28.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:24:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22017-PA 218 GE22017-PA 1..218 1..218 1163 99.1 Plus
Dyak\GE16642-PA 211 GE16642-PA 27..207 19..202 182 26.5 Plus

RH15778.hyp Sequence

Translation from 331 to 987

> RH15778.hyp
MPILYSVISRGTTVLAKFAECVGNFAEVTEHIIGRIGVHNHKMTYTHGDY
LIHYTCENKLVYMCITDNEFERSRAFLFLADIKQKFIQTYGLQVATAIAY
SMNTEFSKILAQQMVYFSQSREVDTISRVHGQIDELKDIMVKNIDSLRDR
GEKLELLVNKTENLSNNSVAFRKASRNLARQMFWKNIRVYVVVGLVITFI
VYVIVSMACGGLAWQSCV*

RH15778.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:08
Subject Length Description Subject Range Query Range Score Percent Strand
Vamp7-PC 218 CG1599-PC 1..218 1..218 1118 100 Plus
Vamp7-PA 218 CG1599-PA 1..218 1..218 1118 100 Plus
Sec22-PA 211 CG7359-PA 43..207 35..202 191 28.4 Plus
Sec22-PB 213 CG7359-PB 45..209 35..202 191 28.4 Plus