BDGP Sequence Production Resources |
Search the DGRC for RH16027
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 160 |
Well: | 27 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG42319-RA |
Protein status: | RH16027.pep: gold |
Preliminary Size: | 756 |
Sequenced Size: | 985 |
Gene | Date | Evidence |
---|---|---|
CG17041 | 2001-12-13 | Blastp of sequenced clone |
CG17041 | 2002-01-01 | Sim4 clustering to Release 2 |
CG17041 | 2003-01-01 | Sim4 clustering to Release 3 |
CG17041 | 2008-04-29 | Release 5.5 accounting |
CG42319 | 2008-08-15 | Release 5.9 accounting |
CG42319 | 2008-12-18 | 5.12 accounting |
985 bp (985 high quality bases) assembled on 2001-12-13
GenBank Submission: AY070677
> RH16027.complete GAATTGCGCCTCGAAACTCGCACGGTTACCCCCAACGGCCTGGCCGACAA AGCGGGCATTCGCCTGGGCGACATCATACTCGAGATCAACGAGGAGGACG CCTCGCAGCTGACGCTGTCCCAGGCCCACGAGAAAATCAACTCGACACCC AAGAAGATACATTTCCTGCTGCGCAACATGGAGGAGGACGATCCCATGGG CCAGTTTGAGGCTGGGGAGGAGAAGTCGATTGTGATGCGGGTTCCAAAGC CTTTGCCGCCGCCCAGTGAATTCACCCCAACCCCCCTGCTTGGCTCGCGT TGTTGGCATCCGATAATGTGGCAAGACCCTCCGGAGCCGCCGAAGCCCAA GAAAAAGAAAACGAAAACGCAGCTGGACGACGAGGGCAACGAGGTGGTCA TTGAGCTCAGCGAGGACGAGTCGTCCGACGAGGAGGAGCAGGAGCTGCCC CACCATCGCATCATCCGGAACATCCGGCGATTCTTTGCGGAGGTGGGCGA CAACCAGGAGCTGCGCACGAACACCATTGAGAACATGCTGATGGCCCTGC CCAGCGCCTCCAAGGCCAAGTGAGGAGCCGTTCACCCAGCTAACCGGCTT ATCCCTGGCAGCAGAAGCTGTCGCATCCCTACACCTGCACTGAGAAAAAA TGCCAGTCAAAAGTTTTTATTACCCACCAAATATGTAAAAGATATAATGT TTAGTTCAGTGTAAACATTTTGAAATGAAATTTCTTTAAATATAATTTAT AGCTGCAAATTACTAGTTAGAATCTTTTTCAAGATAGAGAATGAAGCATT TCAAATGTTCAAAATTGTTCTATCTATAAATTACAATCTCAGATAATAAA TAGTCTTGATTTAGATGAAGCTTTTCCCCTGTGTAGAGTTCCCTAACTCT TTCATACTTGTACATAATTTTGAATATTTCGTGTCTGTTTTTGTCGCTTT AATAAAAAGAAACCCCCCGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 9151157..9151687 | 439..969 | 2655 | 100 | Plus |
chr2R | 21145070 | chr2R | 9150852..9151026 | 268..442 | 845 | 98.9 | Plus |
chr2R | 21145070 | chr2R | 9150002..9150154 | 24..176 | 765 | 100 | Plus |
chr2R | 21145070 | chr2R | 9150261..9150357 | 172..268 | 470 | 99 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 13263797..13264331 | 439..973 | 2675 | 100 | Plus |
2R | 25286936 | 2R | 13263492..13263666 | 268..442 | 875 | 100 | Plus |
2R | 25286936 | 2R | 13262642..13262794 | 24..176 | 765 | 100 | Plus |
2R | 25286936 | 2R | 13262901..13262997 | 172..268 | 470 | 99 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 13264996..13265530 | 439..973 | 2675 | 100 | Plus |
2R | 25260384 | 2R | 13264691..13264865 | 268..442 | 875 | 100 | Plus |
2R | 25260384 | 2R | 13263841..13263993 | 24..176 | 765 | 100 | Plus |
2R | 25260384 | 2R | 13264100..13264196 | 172..268 | 470 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gypsy2 | 6841 | gypsy2 GYPSY2 6841bp | 887..973 | 783..872 | 118 | 66.7 | Plus |
Transpac | 5249 | Transpac 5249bp Derived from AF222049 (AF222049.1) (Rel. 62, Last updated, Version 1). | 3137..3225 | 685..774 | 115 | 62 | Plus |
Doc2-element | 4789 | Doc2-element DOC2 4789bp | 1206..1280 | 739..817 | 114 | 65.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 9149844..9149867 | 1..24 | 95 | -> | Plus |
chr2R | 9150003..9150154 | 25..176 | 100 | -> | Plus |
chr2R | 9150266..9150357 | 177..268 | 100 | -> | Plus |
chr2R | 9150853..9151025 | 269..441 | 98 | -> | Plus |
chr2R | 9151160..9151687 | 442..969 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42319-RD | 203..756 | 18..573 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42319-RD | 203..756 | 18..573 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42319-RD | 203..756 | 18..573 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42319-RD | 203..756 | 18..573 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42319-RD | 203..756 | 18..573 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42319-RA | 2..969 | 2..969 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42319-RA | 2..969 | 2..969 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42319-RA | 1..968 | 2..969 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42319-RA | 2..969 | 2..969 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42319-RA | 1..968 | 2..969 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13262484..13262507 | 1..24 | 95 | -> | Plus |
2R | 13262643..13262794 | 25..176 | 100 | -> | Plus |
2R | 13262906..13262997 | 177..268 | 100 | -> | Plus |
2R | 13263493..13263665 | 269..441 | 100 | -> | Plus |
2R | 13263800..13264327 | 442..969 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13262484..13262507 | 1..24 | 95 | -> | Plus |
2R | 13262643..13262794 | 25..176 | 100 | -> | Plus |
2R | 13262906..13262997 | 177..268 | 100 | -> | Plus |
2R | 13263493..13263665 | 269..441 | 100 | -> | Plus |
2R | 13263800..13264327 | 442..969 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13262484..13262507 | 1..24 | 95 | -> | Plus |
2R | 13262643..13262794 | 25..176 | 100 | -> | Plus |
2R | 13262906..13262997 | 177..268 | 100 | -> | Plus |
2R | 13263493..13263665 | 269..441 | 100 | -> | Plus |
2R | 13263800..13264327 | 442..969 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 9150148..9150299 | 25..176 | 100 | -> | Plus |
arm_2R | 9150411..9150502 | 177..268 | 100 | -> | Plus |
arm_2R | 9150998..9151170 | 269..441 | 100 | -> | Plus |
arm_2R | 9149989..9150012 | 1..24 | 95 | -> | Plus |
arm_2R | 9151305..9151832 | 442..969 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13264999..13265526 | 442..969 | 100 | Plus | |
2R | 13263683..13263706 | 1..24 | 95 | -> | Plus |
2R | 13263842..13263993 | 25..176 | 100 | -> | Plus |
2R | 13264105..13264196 | 177..268 | 100 | -> | Plus |
2R | 13264692..13264864 | 269..441 | 100 | -> | Plus |
Translation from 0 to 572
> RH16027.hyp QLRLETRTVTPNGLADKAGIRLGDIILEINEEDASQLTLSQAHEKINSTP KKIHFLLRNMEEDDPMGQFEAGEEKSIVMRVPKPLPPPSEFTPTPLLGSR CWHPIMWQDPPEPPKPKKKKTKTQLDDEGNEVVIELSEDESSDEEEQELP HHRIIRNIRRFFAEVGDNQELRTNTIENMLMALPSASKAK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG42319-PD | 251 | CG17041-PD | 70..251 | 9..190 | 955 | 100 | Plus |
CG42319-PC | 131 | CG17041-PC | 1..131 | 60..190 | 700 | 100 | Plus |
CG42319-PB | 131 | CG17041-PB | 1..131 | 60..190 | 700 | 100 | Plus |
CG42319-PA | 131 | CG17041-PA | 1..131 | 60..190 | 700 | 100 | Plus |
CG42319-PE | 452 | CG17042-PA | 70..150 | 9..89 | 415 | 100 | Plus |
Translation from 177 to 572
> RH16027.pep MEEDDPMGQFEAGEEKSIVMRVPKPLPPPSEFTPTPLLGSRCWHPIMWQD PPEPPKPKKKKTKTQLDDEGNEVVIELSEDESSDEEEQELPHHRIIRNIR RFFAEVGDNQELRTNTIENMLMALPSASKAK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13686-PA | 251 | GF13686-PA | 121..251 | 1..131 | 490 | 93.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20373-PA | 251 | GG20373-PA | 121..251 | 1..131 | 678 | 98.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21623-PA | 252 | GH21623-PA | 121..250 | 1..130 | 493 | 86.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG42319-PC | 131 | CG17041-PC | 1..131 | 1..131 | 700 | 100 | Plus |
CG42319-PB | 131 | CG17041-PB | 1..131 | 1..131 | 700 | 100 | Plus |
CG42319-PA | 131 | CG17041-PA | 1..131 | 1..131 | 700 | 100 | Plus |
CG42319-PD | 251 | CG17041-PD | 121..251 | 1..131 | 700 | 100 | Plus |
CG42319-PF | 332 | CG42319-PF | 1..30 | 1..30 | 160 | 100 | Plus |
CG42319-PE | 452 | CG17042-PA | 121..150 | 1..30 | 160 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20077-PA | 131 | GI20077-PA | 1..131 | 1..131 | 465 | 89.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11005-PA | 131 | GL11005-PA | 1..131 | 1..131 | 468 | 90.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14289-PA | 131 | GA14289-PA | 1..131 | 1..131 | 468 | 90.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21461-PA | 251 | GM21461-PA | 121..251 | 1..131 | 684 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10959-PA | 251 | GD10959-PA | 121..251 | 1..131 | 684 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21170-PA | 251 | GJ21170-PA | 121..251 | 1..131 | 469 | 87 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17980-PA | 252 | GK17980-PA | 123..252 | 2..131 | 459 | 91.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE12535-PA | 251 | GE12535-PA | 121..251 | 1..131 | 681 | 99.2 | Plus |