BDGP Sequence Production Resources |
Search the DGRC for RH16335
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 163 |
Well: | 35 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG32500-RA |
Protein status: | RH16335.pep: gold |
Sequenced Size: | 1055 |
Gene | Date | Evidence |
---|---|---|
CG33502 | 2001-12-17 | Blastp of sequenced clone |
CG12798 | 2002-01-01 | Sim4 clustering to Release 2 |
CG32857 | 2003-01-01 | Sim4 clustering to Release 3 |
CG32820 | 2003-01-01 | Sim4 clustering to Release 3 |
CG33502 | 2008-04-29 | Release 5.5 accounting |
CG33502 | 2008-08-15 | Release 5.9 accounting |
CG33502 | 2008-12-18 | 5.12 accounting |
1055 bp (1055 high quality bases) assembled on 2001-12-17
GenBank Submission: AY071697
> RH16335.complete GGTTTGTTTTCATTATCAAACGCAAAAGCGAACAATATGTCGAAATTTCT GTCCCAAGCCGCCCTAAATACGCTGCGAAACACGCGCCTGGGGTCGCGGC AACTGGTGCGCAGTTTTAAGGGCATCTCCAACACGCGTAACCATCGCATA CCGGCTCACCAGGAATCGGGATGTGGTCACTCAGTGGGATGCGGGCTGCT AGAGTTGCGGATGCCGGTGGCGTGCAGGAGGAGCATGTTCATCCAGACGC AGGACACTCCGAATCCGGAGAGCTTGAAGTTCCTGCCCGGCGTGGACGTC CTGGGAAAGGGGAACACGTACGACTTCCCCAACGGAACCACCGCCCACAA CAGTCCTTTGGCCAAATTGCTGTTCCGCGTGGAGGGCGTTAAGGGCGTGT TCTTTGGCGCCGACTTCGTCACCATCTCGAAGCAGGAGGGCGCCGAGTGG AGCCTGATTAAGCCAGAGGTGTTTGCCGTCATAATGGACTTCTTTGCCAG CGGCTTACCAGTTCTCAACGATGCCCAGCCCAATGCGGACACCGAGATCC TCGAGGACGACGACGAGACGGTAATGATGATCAAGGAGCTGCTGGACACG CGCATCCGACCCACCGTCCAGGAGGACGGCGGCGACATCGTCTTCATGGG CTACGAGGGCGGCGTGGTCAAGCTAAAGATGCAAGGCTCCTGCTCCTCCT GTCCCAGCTCCATTGTGACGCTGAAGAACGGAGTGCAGAACATGCTGCAA TTCTACATACCGGAGGTGGAGTCCGTTGAGCAGGTCTTCGACGAGGCGGA CAGGATGATCGAGAGCGAGTTTGAGCGCTTCGAAAAGAACCTCAAGACGC TCAAGCAGCAGGAGCCCAGTGGCGGCGGTCCCCATTAGAGGGACTCATTT TAATTTCCCTGCTTACGTTGCTAATTCGCTAGTGAAACCAATAGTTAGTT GTATACATAACGTACATGTAGTTGATTACTTAAATAAATCTACGGCTTTA AGCTTAACCGTTAGTGCATGAACCGATGTACAGAAACCCAAAAAAAAAAA AAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 21474517..21475193 | 1037..361 | 3385 | 100 | Minus |
chrX | 22417052 | chrX | 21480609..21481285 | 1037..361 | 3385 | 100 | Minus |
chrX | 22417052 | chrX | 21486701..21487377 | 1037..361 | 3385 | 100 | Minus |
chrX | 22417052 | chrX | 21476244..21476500 | 361..105 | 1285 | 100 | Minus |
chrX | 22417052 | chrX | 21482336..21482592 | 361..105 | 1285 | 100 | Minus |
chrX | 22417052 | chrX | 21488444..21488700 | 361..105 | 1285 | 100 | Minus |
chrX | 22417052 | chrX | 21476559..21476662 | 105..2 | 520 | 100 | Minus |
chrX | 22417052 | chrX | 21482651..21482754 | 105..2 | 520 | 100 | Minus |
chrX | 22417052 | chrX | 21488759..21488862 | 105..2 | 520 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 21609359..21610035 | 1037..361 | 3385 | 100 | Minus |
X | 23542271 | X | 21615451..21616127 | 1037..361 | 3385 | 100 | Minus |
X | 23542271 | X | 21621543..21622219 | 1037..361 | 3385 | 100 | Minus |
X | 23542271 | X | 21611086..21611342 | 361..105 | 1285 | 100 | Minus |
X | 23542271 | X | 21617178..21617434 | 361..105 | 1285 | 100 | Minus |
X | 23542271 | X | 21623286..21623542 | 361..105 | 1285 | 100 | Minus |
X | 23542271 | X | 21611401..21611504 | 105..2 | 520 | 100 | Minus |
X | 23542271 | X | 21617493..21617596 | 105..2 | 520 | 100 | Minus |
X | 23542271 | X | 21623601..21623704 | 105..2 | 520 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 21606635..21607311 | 1037..361 | 3385 | 100 | Minus |
X | 23527363 | X | 21600543..21601219 | 1037..361 | 3385 | 100 | Minus |
X | 23527363 | X | 21594451..21595127 | 1037..361 | 3385 | 100 | Minus |
X | 23527363 | X | 21596178..21596434 | 361..105 | 1285 | 100 | Minus |
X | 23527363 | X | 21608378..21608634 | 361..105 | 1285 | 100 | Minus |
X | 23527363 | X | 21602270..21602526 | 361..105 | 1285 | 100 | Minus |
X | 23527363 | X | 21602585..21602688 | 105..2 | 520 | 100 | Minus |
X | 23527363 | X | 21596493..21596596 | 105..2 | 520 | 100 | Minus |
X | 23527363 | X | 21608693..21608796 | 105..2 | 520 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 21476560..21476662 | 1..104 | 99 | Minus | |
chrX | 21476244..21476500 | 105..361 | 100 | <- | Minus |
chrX | 21474515..21475192 | 362..1039 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33502-RA | 1..852 | 37..888 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32857-RA | 1..852 | 37..888 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32500-RA | 1..852 | 37..888 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33502-RA | 1..852 | 37..888 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32500-RA | 1..852 | 37..888 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33502-RA | 1..1038 | 2..1039 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32857-RA | 1..1036 | 2..1037 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32500-RA | 46..1084 | 1..1039 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33502-RA | 1..1038 | 2..1039 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32500-RA | 46..1084 | 1..1039 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 21609357..21610034 | 362..1039 | 99 | <- | Minus |
X | 21611086..21611342 | 105..361 | 100 | <- | Minus |
X | 21611402..21611504 | 1..104 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 21609357..21610034 | 362..1039 | 99 | <- | Minus |
X | 21611086..21611342 | 105..361 | 100 | <- | Minus |
X | 21611402..21611504 | 1..104 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 21609357..21610034 | 362..1039 | 99 | <- | Minus |
X | 21611086..21611342 | 105..361 | 100 | <- | Minus |
X | 21611402..21611504 | 1..104 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 21482429..21482531 | 1..104 | 99 | Minus | |
arm_X | 21480384..21481061 | 362..1039 | 99 | <- | Minus |
arm_X | 21482113..21482369 | 105..361 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 21594449..21595126 | 362..1039 | 99 | <- | Minus |
X | 21596178..21596434 | 105..361 | 100 | <- | Minus |
X | 21596494..21596596 | 1..104 | 99 | Minus |
Translation from 3 to 887
> RH16335.hyp LFSLSNAKANNMSKFLSQAALNTLRNTRLGSRQLVRSFKGISNTRNHRIP AHQESGCGHSVGCGLLELRMPVACRRSMFIQTQDTPNPESLKFLPGVDVL GKGNTYDFPNGTTAHNSPLAKLLFRVEGVKGVFFGADFVTISKQEGAEWS LIKPEVFAVIMDFFASGLPVLNDAQPNADTEILEDDDETVMMIKELLDTR IRPTVQEDGGDIVFMGYEGGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQF YIPEVESVEQVFDEADRMIESEFERFEKNLKTLKQQEPSGGGPH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG33502-PA | 283 | CG33502-PA | 1..283 | 12..294 | 1468 | 100 | Plus |
CG32857-PA | 283 | CG32857-PA | 1..283 | 12..294 | 1468 | 100 | Plus |
CG32500-PA | 283 | CG32500-PA | 1..283 | 12..294 | 1468 | 100 | Plus |
Translation from 36 to 887
> RH16335.pep MSKFLSQAALNTLRNTRLGSRQLVRSFKGISNTRNHRIPAHQESGCGHSV GCGLLELRMPVACRRSMFIQTQDTPNPESLKFLPGVDVLGKGNTYDFPNG TTAHNSPLAKLLFRVEGVKGVFFGADFVTISKQEGAEWSLIKPEVFAVIM DFFASGLPVLNDAQPNADTEILEDDDETVMMIKELLDTRIRPTVQEDGGD IVFMGYEGGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEVESVEQV FDEADRMIESEFERFEKNLKTLKQQEPSGGGPH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF20932-PA | 286 | GF20932-PA | 1..284 | 1..281 | 1127 | 74.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17526-PA | 283 | GG17526-PA | 1..283 | 1..283 | 1414 | 93.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17809-PA | 298 | GH17809-PA | 1..289 | 1..277 | 1005 | 66.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG32500-PA | 283 | CG32500-PA | 1..283 | 1..283 | 1468 | 100 | Plus |
CG32857-PA | 283 | CG32857-PA | 1..283 | 1..283 | 1468 | 100 | Plus |
CG33502-PA | 283 | CG33502-PA | 1..283 | 1..283 | 1468 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14603-PA | 259 | GI14603-PA | 36..243 | 63..270 | 975 | 86.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13432-PA | 282 | GL13432-PA | 1..282 | 1..283 | 1083 | 74.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA22888-PA | 286 | GA22888-PA | 1..286 | 1..283 | 1060 | 73.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13534-PA | 283 | GM13534-PA | 1..283 | 1..283 | 1439 | 95.4 | Plus |
Dsec\GM19271-PA | 110 | GM19271-PA | 1..110 | 1..110 | 522 | 89.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15490-PA | 283 | GD15490-PA | 1..283 | 1..283 | 1417 | 94.3 | Plus |
Dsim\GD12677-PA | 175 | GD12677-PA | 1..175 | 109..283 | 898 | 97.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19011-PA | 298 | GJ19011-PA | 1..277 | 1..269 | 1034 | 73 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25604-PA | 289 | GK25604-PA | 1..287 | 1..282 | 1024 | 69.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE15286-PA | 283 | GE15286-PA | 1..283 | 1..283 | 1376 | 91.5 | Plus |