BDGP Sequence Production Resources |
Search the DGRC for RH17228
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 172 |
Well: | 28 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Cyt-c-p-RA |
Protein status: | RH17228.pep: gold |
Preliminary Size: | 617 |
Sequenced Size: | 763 |
Gene | Date | Evidence |
---|---|---|
CG17903 | 2002-01-01 | Sim4 clustering to Release 2 |
CG17903 | 2003-01-01 | Sim4 clustering to Release 3 |
CG17903 | 2003-08-11 | Blastp of sequenced clone |
Cyt-c-p | 2008-04-29 | Release 5.5 accounting |
Cyt-c-p | 2008-08-15 | Release 5.9 accounting |
Cyt-c-p | 2008-12-18 | 5.12 accounting |
763 bp (763 high quality bases) assembled on 2003-08-11
GenBank Submission: AY071701
> RH17228.complete GAATGCGTGGCCCCCGGTCACTCTGGTCACACTAATTACCTATCGACATA ACGCGCGCTCGTCATTCGTGAAAAATCGGCGACGCTCGACGTTTGTGTTC AATTCGAGTCCGTGTTAACACATTAATTAACCACATAATCCATAATGGGC GTTCCTGCTGGTGATGTTGAGAAGGGAAAGAAGCTGTTCGTGCAGCGCTG CGCCCAGTGCCACACCGTTGAGGCTGGTGGCAAGCACAAGGTTGGACCCA ATCTGCATGGTCTGATCGGTCGCAAGACCGGACAGGCGGCCGGATTCGCG TACACGGACGCCAACAAGGCCAAGGGCATCACCTGGAACGAGGACACCCT GTTCGAGTACCTGGAGAACCCCAAGAAGTACATCCCCGGCACCAAGATGA TCTTCGCCGGTCTGAAGAAGCCCAACGAGCGCGGCGATCTGATCGCCTAC CTGAAGTCGGCGACCAAGTAATGGTGCTGTCCATCAACTTACCCACAACC ACTGCAGGATGTCAAACTGTATTATTGTGTTCAGTCACAGTCCGGCACGC AAATGCAGCAGCAGCAACAACTACAACTACAAATCAACATAGTACAGACC TAAAGAACTACAATTATGTTAATTATAAAGTTTAAATAGGACAATTTATT ATTTAATTTAAATAAAAAGTGGAATATTTAATTCAAACCCGATGAGAATT GTGACATCCACAAAAAAGTTAAATAATAAAAAAAGAACTAAAAAACGAAA AAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Cyt-c-p-RA | 823 | Cyt-c-p-RA | 2..755 | 2..755 | 3725 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
rover | 7318 | rover ROVER 7318bp | 678..846 | 566..743 | 147 | 58.7 | Plus |
rover | 7318 | rover ROVER 7318bp | 829..997 | 566..743 | 147 | 58.7 | Plus |
rover | 7318 | rover ROVER 7318bp | 980..1079 | 566..667 | 135 | 63.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2627..2665 | 549..589 | 128 | 82.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5649..5751 | 550..652 | 127 | 63.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1557..1674 | 556..672 | 119 | 59.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6768 | 542..589 | 113 | 75.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2402..2434 | 549..581 | 111 | 81.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2499..2546 | 556..602 | 111 | 72.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6748..6789 | 549..589 | 108 | 76.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6769..6810 | 549..589 | 108 | 76.2 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 16718606..16718708 | 1..103 | 99 | -> | Plus |
chr2L | 16720741..16721357 | 104..720 | 95 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cyt-c-p-RA | 1..327 | 145..471 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cyt-c-p-RA | 1..327 | 145..471 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cyt-c-p-RA | 1..327 | 145..471 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cyt-c-p-RA | 1..327 | 145..471 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cyt-c-p-RA | 2..720 | 2..720 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cyt-c-p-RA | 2..720 | 2..720 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cyt-c-p-RA | 1..662 | 59..720 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cyt-c-p-RA | 2..720 | 2..720 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cyt-c-p-RA | 1..662 | 59..720 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 16719874..16719976 | 1..103 | 99 | -> | Plus |
2L | 16722009..16722625 | 104..720 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 16719874..16719976 | 1..103 | 99 | -> | Plus |
2L | 16722009..16722625 | 104..720 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 16719874..16719976 | 1..103 | 99 | -> | Plus |
2L | 16722009..16722625 | 104..720 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 16719874..16719976 | 1..103 | 99 | -> | Plus |
arm_2L | 16722009..16722625 | 104..720 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 16722009..16722625 | 104..720 | 100 | Plus | |
2L | 16719874..16719976 | 1..103 | 99 | -> | Plus |
Translation from 144 to 470
> RH17228.hyp MGVPAGDVEKGKKLFVQRCAQCHTVEAGGKHKVGPNLHGLIGRKTGQAAG FAYTDANKAKGITWNEDTLFEYLENPKKYIPGTKMIFAGLKKPNERGDLI AYLKSATK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Cyt-c-p-PB | 108 | CG17903-PB | 1..108 | 1..108 | 578 | 100 | Plus |
Cyt-c-p-PA | 108 | CG17903-PA | 1..108 | 1..108 | 578 | 100 | Plus |
Cyt-c-d-PB | 105 | CG13263-PB | 3..103 | 5..105 | 407 | 72.3 | Plus |
Cyt-c-d-PA | 105 | CG13263-PA | 3..103 | 5..105 | 407 | 72.3 | Plus |
Translation from 144 to 470
> RH17228.pep MGVPAGDVEKGKKLFVQRCAQCHTVEAGGKHKVGPNLHGLIGRKTGQAAG FAYTDANKAKGITWNEDTLFEYLENPKKYIPGTKMIFAGLKKPNERGDLI AYLKSATK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF20853-PA | 108 | GF20853-PA | 1..108 | 1..108 | 569 | 100 | Plus |
Dana\GF20842-PA | 104 | GF20842-PA | 4..101 | 7..104 | 383 | 71.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22763-PA | 108 | GG22763-PA | 1..108 | 1..108 | 569 | 100 | Plus |
Dere\GG22762-PA | 105 | GG22762-PA | 3..103 | 5..105 | 387 | 71.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11376-PA | 108 | GH11376-PA | 1..108 | 1..108 | 563 | 99.1 | Plus |
Dgri\GH11375-PA | 103 | GH11375-PA | 4..101 | 7..105 | 341 | 63.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Cyt-c-p-PB | 108 | CG17903-PB | 1..108 | 1..108 | 578 | 100 | Plus |
Cyt-c-p-PA | 108 | CG17903-PA | 1..108 | 1..108 | 578 | 100 | Plus |
Cyt-c-d-PB | 105 | CG13263-PB | 3..103 | 5..105 | 407 | 72.3 | Plus |
Cyt-c-d-PA | 105 | CG13263-PA | 3..103 | 5..105 | 407 | 72.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18081-PA | 108 | GI18081-PA | 1..108 | 1..108 | 560 | 98.1 | Plus |
Dmoj\GI18080-PA | 104 | GI18080-PA | 4..102 | 7..105 | 353 | 64.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18778-PA | 116 | GL18778-PA | 1..98 | 1..98 | 515 | 98 | Plus |
Dper\GL18777-PA | 105 | GL18777-PA | 4..102 | 6..104 | 406 | 71.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14714-PA | 108 | GA14714-PA | 1..108 | 1..108 | 569 | 100 | Plus |
Dpse\GA12159-PA | 105 | GA12159-PA | 4..102 | 6..104 | 406 | 71.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17197-PA | 108 | GM17197-PA | 1..108 | 1..108 | 569 | 100 | Plus |
Dsec\GM17196-PA | 105 | GM17196-PA | 3..103 | 5..105 | 396 | 72.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24074-PA | 108 | GD24074-PA | 1..108 | 1..108 | 569 | 100 | Plus |
Dsim\GD24072-PA | 105 | GD24072-PA | 3..103 | 5..105 | 396 | 72.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16722-PA | 108 | GJ16722-PA | 1..108 | 1..108 | 563 | 99.1 | Plus |
Dvir\GJ16711-PA | 104 | GJ16711-PA | 4..102 | 7..105 | 379 | 70.7 | Plus |