BDGP Sequence Production Resources |
Search the DGRC for RH17411
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 174 |
Well: | 11 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG12384-RA |
Protein status: | RH17411.pep: gold |
Preliminary Size: | 591 |
Sequenced Size: | 597 |
Gene | Date | Evidence |
---|---|---|
CG12384 | 2002-10-18 | Blastp of sequenced clone |
CG12384 | 2003-01-01 | Sim4 clustering to Release 3 |
CG12384 | 2008-04-29 | Release 5.5 accounting |
CG12384 | 2008-08-15 | Release 5.9 accounting |
CG12384 | 2008-12-18 | 5.12 accounting |
597 bp (597 high quality bases) assembled on 2002-10-18
GenBank Submission: BT001778
> RH17411.complete GACAATTAGAACGCAAAAGCAAAACACAGCGGTGCCGCGCATTTATTTAC AACTAGAAAAGCGCTTACTAAACCAGAACAAATGGCAGATGAACAACCAA ATCTTGTGGCCGGACACCCACCTGCATTGAAGGCTGGTGGCATGCGAATT GTGCAGCACAAAGCGCCGACGGCAGAACGCGCGCCCAAGGATGCAGAGGA TTGTACTGGACTGACACAACCCATTGCCGTGAACTCCGGCTCTGTGAGCG GTGCCCCCGTCAAGGGCAACACGGACTTTACGCCCGCCTCCGCCCAGGTG GCCCACTCGCCCAAGCCACCGGCTGCAGTGCAGCAGAAGCCCCAGATCCA CATCCAGCAGCCACGGAAGTGATGCGTACTCGGGCGGAATAACTATTATC ATTATCTAATCTCTTTGATCTTTTGTTGAAATTCTATGAGTCCTCTCAAT GGTATTGAAATCGCCTTTGAATGCGATATTTACTCTTTAATTTTATATAT GCATTTGCCACTGCATTCCATAAATTAAAAATGCTGATTTTCTGAGTTAA TATTTTGTAATAAACTTTATCCCTTTTATAGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12384-RA | 848 | CG12384-RA | 169..749 | 2..582 | 2905 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 7245357..7245721 | 581..217 | 1825 | 100 | Minus |
chr2R | 21145070 | chr2R | 7245786..7245874 | 216..128 | 445 | 100 | Minus |
chr2R | 21145070 | chr2R | 7246408..7246472 | 127..63 | 325 | 100 | Minus |
chr2R | 21145070 | chr2R | 7246538..7246599 | 63..2 | 310 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 11357906..11358271 | 582..217 | 1830 | 100 | Minus |
2R | 25286936 | 2R | 11358336..11358424 | 216..128 | 445 | 100 | Minus |
2R | 25286936 | 2R | 11358958..11359022 | 127..63 | 325 | 100 | Minus |
2R | 25286936 | 2R | 11359088..11359149 | 63..2 | 310 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 11359105..11359470 | 582..217 | 1830 | 100 | Minus |
2R | 25260384 | 2R | 11359535..11359623 | 216..128 | 445 | 100 | Minus |
2R | 25260384 | 2R | 11360157..11360221 | 127..63 | 325 | 100 | Minus |
2R | 25260384 | 2R | 11360287..11360348 | 63..2 | 310 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mdg3 | 5519 | mdg3 DMMDG3 5519bp Derived from X95908 (e990667) (Rel. 49, Last updated, Version 3). | 2061..2141 | 497..419 | 121 | 63 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 7245357..7245721 | 217..581 | 100 | <- | Minus |
chr2R | 7245786..7245874 | 128..216 | 100 | <- | Minus |
chr2R | 7246408..7246471 | 64..127 | 100 | <- | Minus |
chr2R | 7246538..7246599 | 1..63 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12384-RA | 1..291 | 82..372 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12384-RA | 1..291 | 82..372 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12384-RA | 1..291 | 82..372 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12384-RA | 1..291 | 82..372 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12384-RA | 1..291 | 82..372 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12384-RA | 4..584 | 1..581 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12384-RA | 20..600 | 1..581 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12384-RA | 27..607 | 1..581 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12384-RA | 4..584 | 1..581 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12384-RA | 27..607 | 1..581 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11357907..11358271 | 217..581 | 100 | <- | Minus |
2R | 11358336..11358424 | 128..216 | 100 | <- | Minus |
2R | 11358958..11359021 | 64..127 | 100 | <- | Minus |
2R | 11359088..11359149 | 1..63 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11357907..11358271 | 217..581 | 100 | <- | Minus |
2R | 11358336..11358424 | 128..216 | 100 | <- | Minus |
2R | 11358958..11359021 | 64..127 | 100 | <- | Minus |
2R | 11359088..11359149 | 1..63 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11357907..11358271 | 217..581 | 100 | <- | Minus |
2R | 11358336..11358424 | 128..216 | 100 | <- | Minus |
2R | 11358958..11359021 | 64..127 | 100 | <- | Minus |
2R | 11359088..11359149 | 1..63 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 7246463..7246526 | 64..127 | 100 | <- | Minus |
arm_2R | 7246593..7246654 | 1..63 | 98 | Minus | |
arm_2R | 7245412..7245776 | 217..581 | 100 | <- | Minus |
arm_2R | 7245841..7245929 | 128..216 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11360287..11360348 | 1..63 | 98 | Minus | |
2R | 11359106..11359470 | 217..581 | 100 | <- | Minus |
2R | 11359535..11359623 | 128..216 | 100 | <- | Minus |
2R | 11360157..11360220 | 64..127 | 100 | <- | Minus |
Translation from 81 to 371
> RH17411.pep MADEQPNLVAGHPPALKAGGMRIVQHKAPTAERAPKDAEDCTGLTQPIAV NSGSVSGAPVKGNTDFTPASAQVAHSPKPPAAVQQKPQIHIQQPRK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12400-PA | 96 | GF12400-PA | 1..96 | 1..96 | 442 | 90.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22656-PA | 96 | GG22656-PA | 1..96 | 1..96 | 488 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22862-PA | 97 | GH22862-PA | 1..97 | 1..96 | 428 | 89.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12384-PA | 96 | CG12384-PA | 1..96 | 1..96 | 503 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21241-PA | 96 | GI21241-PA | 1..96 | 1..96 | 436 | 89.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17336-PA | 96 | GL17336-PA | 1..96 | 1..96 | 416 | 84.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11596-PA | 96 | GA11596-PA | 1..96 | 1..96 | 416 | 84.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20437-PA | 96 | GM20437-PA | 1..96 | 1..96 | 488 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15253-PA | 96 | GD15253-PA | 1..96 | 1..96 | 488 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20845-PA | 96 | GJ20845-PA | 1..96 | 1..96 | 421 | 87.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK19452-PA | 96 | GK19452-PA | 1..96 | 1..96 | 427 | 88.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE13531-PA | 96 | GE13531-PA | 1..96 | 1..96 | 483 | 99 | Plus |
Translation from 81 to 371
> RH17411.hyp MADEQPNLVAGHPPALKAGGMRIVQHKAPTAERAPKDAEDCTGLTQPIAV NSGSVSGAPVKGNTDFTPASAQVAHSPKPPAAVQQKPQIHIQQPRK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12384-PA | 96 | CG12384-PA | 1..96 | 1..96 | 503 | 100 | Plus |