Clone RH17440 Report

Search the DGRC for RH17440

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:174
Well:40
Vector:pFlc-1
Associated Gene/TranscriptCG16756-RA
Protein status:RH17440.pep: gold
Preliminary Size:366
Sequenced Size:536

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG16756 2001-12-13 Blastp of sequenced clone
CG16756 2002-01-01 Sim4 clustering to Release 2
CG16756 2003-01-01 Sim4 clustering to Release 3
CG16756 2008-04-29 Release 5.5 accounting
CG16756 2008-08-15 Release 5.9 accounting
CG16756 2008-12-18 5.12 accounting

Clone Sequence Records

RH17440.complete Sequence

536 bp (536 high quality bases) assembled on 2001-12-13

GenBank Submission: AY070679

> RH17440.complete
GAGTCGCAATATGAGAGCTGCGCCATTCGGATCGTGGTACTGGCTGGGAT
TGGGATTGGGCCTGCTTCTGGCCATCGAGTGCGGCGTGGTTTCCGCCAAG
CGTTTCCTGCGCTGTGAACTGGCCCGCAAGTTGCTCGATCAGCATGGTTT
CGAACGCAGTCTGCTCTCGAATTGGATTTGTTTGCTAGAGCACGAAAGCG
ATCTGGATACCGGCAGGATTACAACCAATGCGAATGGATCTCGGAACTAT
GGGCTGTTCCAAATCAATGGCAGGTTTTGTCAGGAGGGAAGGCGTGGCGG
CATTTGCAATGCCAAGTGCGAAGATTTTTTGGACGAAAATTTAAGGGAGT
CGGTTACTTGCGCCAAGCGCATCCAAACCTCGGATGGTTTTCGTCATTGG
GCGGGATGGCAACGATATTGCCGAAACGCCCAAAATCTGCCTAATCTTAA
GGTTATCTGTGGGATCTAGATGTAATTAATTTAATGATTTCAATTTGTAA
CAAATAAATATTATATATGCAAAAAAAAAAAAAAAA

RH17440.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:45:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG16756-RA 859 CG16756-RA 265..782 2..519 2575 99.8 Plus
CG16756.a 658 CG16756.a 287..633 173..519 1720 99.7 Plus
CG16756.a 658 CG16756.a 70..242 2..174 865 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:42:13
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 5320605..5320801 322..518 940 98.5 Plus
chrX 22417052 chrX 5320108..5320280 2..174 850 99.4 Plus
chrX 22417052 chrX 5320395..5320548 174..327 755 99.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:23:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:42:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5428019..5428216 322..519 975 99.5 Plus
X 23542271 X 5427519..5427691 2..174 865 100 Plus
X 23542271 X 5427806..5427959 174..327 755 99.4 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:06:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 5436117..5436314 322..519 975 99.4 Plus
X 23527363 X 5435617..5435789 2..174 865 100 Plus
X 23527363 X 5435904..5436057 174..327 755 99.3 Plus
Blast to na_te.dros performed on 2019-03-15 16:42:12 has no hits.

RH17440.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:42:56 Download gff for RH17440.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 5320106..5320279 1..173 98 -> Plus
chrX 5320395..5320555 174..334 96 <- Plus
chrX 5320618..5320801 335..520 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:42:34 Download gff for RH17440.complete
Subject Subject Range Query Range Percent Splice Strand
CG16756-RA 1..459 11..469 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:39:55 Download gff for RH17440.complete
Subject Subject Range Query Range Percent Splice Strand
CG16756-RA 1..459 11..469 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:08:19 Download gff for RH17440.complete
Subject Subject Range Query Range Percent Splice Strand
CG16756-RA 1..459 11..469 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:17:06 Download gff for RH17440.complete
Subject Subject Range Query Range Percent Splice Strand
CG16756-RA 1..459 11..469 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:46:59 Download gff for RH17440.complete
Subject Subject Range Query Range Percent Splice Strand
CG16756-RA 1..459 11..469 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:45:02 Download gff for RH17440.complete
Subject Subject Range Query Range Percent Splice Strand
CG16756-RA 1..519 1..518 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:39:55 Download gff for RH17440.complete
Subject Subject Range Query Range Percent Splice Strand
CG16756-RA 1..519 1..518 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:08:19 Download gff for RH17440.complete
Subject Subject Range Query Range Percent Splice Strand
CG16756-RA 1..520 1..520 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:17:06 Download gff for RH17440.complete
Subject Subject Range Query Range Percent Splice Strand
CG16756-RA 1..519 1..518 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:46:59 Download gff for RH17440.complete
Subject Subject Range Query Range Percent Splice Strand
CG16756-RA 1..520 1..520 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:42:56 Download gff for RH17440.complete
Subject Subject Range Query Range Percent Splice Strand
X 5427517..5427690 1..173 99 -> Plus
X 5427806..5427955 174..323 100 -> Plus
X 5428021..5428216 324..520 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:42:56 Download gff for RH17440.complete
Subject Subject Range Query Range Percent Splice Strand
X 5427517..5427690 1..173 99 -> Plus
X 5427806..5427955 174..323 100 -> Plus
X 5428021..5428216 324..520 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:42:56 Download gff for RH17440.complete
Subject Subject Range Query Range Percent Splice Strand
X 5427517..5427690 1..173 99 -> Plus
X 5427806..5427955 174..323 100 -> Plus
X 5428021..5428216 324..520 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:08:19 Download gff for RH17440.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5321550..5321723 1..173 99 -> Plus
arm_X 5321839..5321988 174..323 100 -> Plus
arm_X 5322054..5322249 324..520 98   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:52:53 Download gff for RH17440.complete
Subject Subject Range Query Range Percent Splice Strand
X 5435615..5435788 1..173 99 -> Plus
X 5435904..5436053 174..323 100 -> Plus
X 5436119..5436314 324..520 98   Plus

RH17440.hyp Sequence

Translation from 0 to 468

> RH17440.hyp
SRNMRAAPFGSWYWLGLGLGLLLAIECGVVSAKRFLRCELARKLLDQHGF
ERSLLSNWICLLEHESDLDTGRITTNANGSRNYGLFQINGRFCQEGRRGG
ICNAKCEDFLDENLRESVTCAKRIQTSDGFRHWAGWQRYCRNAQNLPNLK
VICGI*

RH17440.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:17:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG16756-PA 152 CG16756-PA 1..152 4..155 834 100 Plus
CG16799-PB 179 CG16799-PB 27..164 21..155 423 50 Plus
CG16799-PA 179 CG16799-PA 27..164 21..155 423 50 Plus
CG11159-PA 146 CG11159-PA 6..143 8..149 291 44.8 Plus
CG7798-PA 148 CG7798-PA 6..136 21..149 203 35.1 Plus

RH17440.pep Sequence

Translation from 10 to 468

> RH17440.pep
MRAAPFGSWYWLGLGLGLLLAIECGVVSAKRFLRCELARKLLDQHGFERS
LLSNWICLLEHESDLDTGRITTNANGSRNYGLFQINGRFCQEGRRGGICN
AKCEDFLDENLRESVTCAKRIQTSDGFRHWAGWQRYCRNAQNLPNLKVIC
GI*

RH17440.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:10:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21082-PA 159 GF21082-PA 1..159 1..152 599 77.4 Plus
Dana\GF12751-PA 164 GF12751-PA 5..148 9..152 425 50.3 Plus
Dana\GF12750-PA 146 GF12750-PA 25..143 27..146 274 46.3 Plus
Dana\GF24155-PA 1337 GF24155-PA 186..305 29..139 227 38.3 Plus
Dana\GF10076-PA 142 GF10076-PA 9..130 19..137 205 37.1 Plus
Dana\GF24155-PA 1337 GF24155-PA 605..730 29..146 193 32.3 Plus
Dana\GF24155-PA 1337 GF24155-PA 443..563 28..138 184 34.7 Plus
Dana\GF24155-PA 1337 GF24155-PA 9..135 18..139 147 30 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:10:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18760-PA 176 GG18760-PA 25..176 1..152 688 91.4 Plus
Dere\GG20840-PA 179 GG20840-PA 25..164 16..152 416 50 Plus
Dere\GG20839-PA 146 GG20839-PA 25..143 27..146 273 46.3 Plus
Dere\GG14940-PA 1066 GG14940-PA 184..303 29..139 220 37.5 Plus
Dere\GG14940-PA 1066 GG14940-PA 596..721 29..146 210 34.6 Plus
Dere\GG14940-PA 1066 GG14940-PA 438..557 28..138 198 35 Plus
Dere\GG14615-PA 141 GG14615-PA 10..137 20..146 193 34.1 Plus
Dere\GG14940-PA 1066 GG14940-PA 16..138 28..142 146 30.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:10:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24755-PA 146 GH24755-PA 5..146 15..152 546 70.4 Plus
Dgri\GH23420-PA 146 GH23420-PA 5..146 15..152 546 70.4 Plus
Dgri\GH19893-PA 169 GH19893-PA 27..154 26..152 431 55.5 Plus
Dgri\GH19892-PA 145 GH19892-PA 24..142 27..146 274 46.3 Plus
Dgri\GH16162-PA 1204 GH16162-PA 198..321 27..141 220 36.3 Plus
Dgri\GH16162-PA 1204 GH16162-PA 460..580 28..139 209 35.5 Plus
Dgri\GH16162-PA 1204 GH16162-PA 618..737 29..139 185 30 Plus
Dgri\GH16162-PA 1204 GH16162-PA 938..1063 29..146 185 30.7 Plus
Dgri\GH16162-PA 1204 GH16162-PA 778..897 29..139 183 30 Plus
Dgri\GH16162-PA 1204 GH16162-PA 21..139 28..138 158 31.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:12:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG16756-PA 152 CG16756-PA 1..152 1..152 834 100 Plus
CG16799-PB 179 CG16799-PB 27..164 18..152 423 50 Plus
CG16799-PA 179 CG16799-PA 27..164 18..152 423 50 Plus
CG11159-PA 146 CG11159-PA 6..143 5..146 291 44.8 Plus
CG8492-PD 1360 CG8492-PD 185..303 30..139 211 37.8 Plus
CG8492-PD 1360 CG8492-PD 595..720 29..146 208 36.2 Plus
CG7798-PA 148 CG7798-PA 6..136 18..146 203 35.1 Plus
LysP-PA 141 CG9116-PA 10..137 20..146 197 33.3 Plus
LysS-PA 140 CG1165-PA 8..129 18..137 196 36.3 Plus
CG8492-PD 1360 CG8492-PD 437..556 28..138 188 35 Plus
LysX-PA 142 CG9120-PA 9..130 19..137 187 34.1 Plus
LysD-PA 140 CG9118-PA 6..129 18..137 182 34.1 Plus
LysE-PA 140 CG1180-PA 6..129 18..137 176 34.1 Plus
LysB-PB 140 CG1179-PB 23..129 34..137 174 35.8 Plus
LysB-PA 140 CG1179-PA 23..129 34..137 174 35.8 Plus
CG8492-PD 1360 CG8492-PD 14..138 26..142 164 29.6 Plus
CG30062-PB 171 CG30062-PB 26..140 29..137 159 36.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:10:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15787-PA 146 GI15787-PA 1..146 1..152 575 71 Plus
Dmoj\GI19848-PA 160 GI19848-PA 22..148 27..152 430 55.9 Plus
Dmoj\GI19847-PA 145 GI19847-PA 24..142 27..146 274 46.3 Plus
Dmoj\GI13315-PA 1195 GI13315-PA 201..322 29..141 225 37.7 Plus
Dmoj\GI13315-PA 1195 GI13315-PA 793..918 29..146 214 35.4 Plus
Dmoj\GI13315-PA 1195 GI13315-PA 470..591 28..139 193 37.1 Plus
Dmoj\GI16641-PA 144 GI16641-PA 8..139 16..146 189 33.1 Plus
Dmoj\GI13315-PA 1195 GI13315-PA 632..752 29..139 176 32.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:10:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16431-PA 149 GL16431-PA 1..149 1..152 587 76.3 Plus
Dper\GL17433-PA 165 GL17433-PA 22..148 27..152 415 55.1 Plus
Dper\GL17432-PA 146 GL17432-PA 25..143 27..146 277 47.1 Plus
Dper\GL17828-PA 1039 GL17828-PA 197..314 29..137 220 38.1 Plus
Dper\GL17828-PA 1039 GL17828-PA 626..745 29..139 206 35 Plus
Dper\GL17828-PA 1039 GL17828-PA 467..586 30..138 198 36.7 Plus
Dper\GL21426-PA 142 GL21426-PA 23..138 34..148 177 35 Plus
Dper\GL17828-PA 1039 GL17828-PA 23..156 25..152 165 30.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:10:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14129-PA 149 GA14129-PA 26..149 29..152 565 83.9 Plus
Dpse\GA24823-PA 165 GA24823-PA 22..148 27..152 421 55.9 Plus
Dpse\GA10804-PA 146 GA10804-PA 25..143 27..146 277 47.1 Plus
Dpse\GA28499-PA 1221 GA28499-PA 197..314 29..137 220 38.1 Plus
Dpse\GA28499-PA 1221 GA28499-PA 636..755 29..139 201 34.2 Plus
Dpse\GA28499-PA 1221 GA28499-PA 477..596 30..138 197 36.7 Plus
Dpse\GA28482-PA 141 GA28482-PA 18..129 25..132 191 36.3 Plus
Dpse\GA28499-PA 1221 GA28499-PA 19..156 21..152 165 30 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:10:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12412-PA 152 GM12412-PA 1..152 1..152 780 98 Plus
Dsec\GM19770-PA 179 GM19770-PA 25..164 16..152 415 50 Plus
Dsec\GM19768-PA 146 GM19768-PA 25..143 27..146 273 46.3 Plus
Dsec\GM24992-PA 1056 GM24992-PA 184..303 29..139 221 37.5 Plus
Dsec\GM24992-PA 1056 GM24992-PA 595..720 29..146 213 35.4 Plus
Dsec\GM24992-PA 1056 GM24992-PA 437..556 28..138 198 35 Plus
Dsec\GM14380-PA 140 GM14380-PA 23..129 34..137 166 35.8 Plus
Dsec\GM24992-PA 1056 GM24992-PA 16..138 28..142 143 30.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:10:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25259-PA 179 GD25259-PA 25..164 16..152 412 49.3 Plus
Dsim\GD25258-PA 146 GD25258-PA 25..143 27..146 273 46.3 Plus
Dsim\GD13037-PA 868 GD13037-PA 184..303 29..139 220 37.5 Plus
Dsim\GD13037-PA 868 GD13037-PA 595..720 29..146 215 36.2 Plus
Dsim\GD13037-PA 868 GD13037-PA 437..556 28..138 200 35.8 Plus
Dsim\GD17618-PA 140 GD17618-PA 8..129 18..137 187 35.5 Plus
Dsim\GD17617-PA 140 GD17617-PA 8..129 18..137 187 35.5 Plus
Dsim\GD13037-PA 868 GD13037-PA 16..138 28..142 148 30.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:10:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18643-PA 146 GJ18643-PA 1..146 1..152 574 69.7 Plus
Dvir\GJ18809-PA 164 GJ18809-PA 26..152 27..152 438 56.7 Plus
Dvir\GJ18798-PA 147 GJ18798-PA 25..144 26..146 274 45.9 Plus
Dvir\GJ12084-PA 1101 GJ12084-PA 188..309 29..141 230 37.7 Plus
Dvir\GJ12084-PA 1101 GJ12084-PA 427..548 28..139 208 36.1 Plus
Dvir\GJ12894-PA 143 GJ12894-PA 8..138 18..146 198 34.8 Plus
Dvir\GJ12084-PA 1101 GJ12084-PA 586..711 29..146 192 33.1 Plus
Dvir\GJ12084-PA 1101 GJ12084-PA 25..154 29..152 164 30.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:10:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21589-PA 161 GK21589-PA 6..146 16..152 426 52.5 Plus
Dwil\GK15326-PA 120 GK15326-PA 23..120 27..124 408 75.5 Plus
Dwil\GK21588-PA 148 GK21588-PA 26..145 26..146 280 46.7 Plus
Dwil\GK10945-PA 1034 GK10945-PA 189..309 29..139 219 38.8 Plus
Dwil\GK10945-PA 1034 GK10945-PA 714..839 29..146 199 35.4 Plus
Dwil\GK10945-PA 1034 GK10945-PA 410..530 28..139 194 34.7 Plus
Dwil\GK10945-PA 1034 GK10945-PA 564..683 29..139 191 34.2 Plus
Dwil\GK12043-PA 146 GK12043-PA 8..143 14..147 176 33.8 Plus
Dwil\GK10945-PA 1034 GK10945-PA 16..131 26..138 147 29.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:10:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16404-PA 152 GE16404-PA 1..152 1..152 676 90.1 Plus
Dyak\GE13779-PA 179 GE13779-PA 25..164 16..152 418 50 Plus
Dyak\GE13778-PA 146 GE13778-PA 25..143 27..146 273 46.3 Plus
Dyak\GE20392-PA 967 GE20392-PA 184..303 29..139 221 37.5 Plus
Dyak\GE20392-PA 967 GE20392-PA 597..722 29..146 206 34.6 Plus
Dyak\GE20392-PA 967 GE20392-PA 439..558 28..138 197 35 Plus
Dyak\GE20976-PA 141 GE20976-PA 10..137 20..146 192 34.8 Plus
Dyak\GE20392-PA 967 GE20392-PA 16..134 28..138 142 30.3 Plus