BDGP Sequence Production Resources |
Search the DGRC for RH17480
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 174 |
Well: | 80 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG32442-RB |
Protein status: | RH17480.pep: gold |
Sequenced Size: | 849 |
Gene | Date | Evidence |
---|---|---|
CG32442 | 2002-10-24 | Blastp of sequenced clone |
CG32442 | 2003-01-01 | Sim4 clustering to Release 3 |
CG32442 | 2008-04-29 | Release 5.5 accounting |
CG32442 | 2008-08-15 | Release 5.9 accounting |
CG32442 | 2008-12-18 | 5.12 accounting |
849 bp (849 high quality bases) assembled on 2002-10-24
GenBank Submission: BT001779
> RH17480.complete GGTTTGTTTTTCGGGCAGCCCAATGAAACTTTAAATGGATGCAAAATGTC CGAAAAGAAGCGATTTGTGTGCGTTAATTGTGGACACAGAGTAAAAGAAC TGTTCAAGAAATACAGCAATACTATGAAAACCACGCAATGCGACAACTGT CACCAAATCACGGATAAATACATTGAGTTCGAGGAGTTTATCATATTAAT AGATGCACTGCTATTAGATTCGTGCGCCTTCCGGCACATTATATACAATG GCGACTTTAAGGTGACGAGCTCTACTGGAAGGTTTCGCTGGTGGTGCTGC TCCTGGAATCCTTTGCGCTGTGCCGCCAAAAACTGCCCGACCCTCCGAAT GCCTCTTTGCATGTCCACGAAAAGGGCTTTTACACATATACCCTTCAAAA CATGGGAGATTACATGTTCATGACTCTATTGCTGCTAATAATCACCGCCA CTCTGAGTATTGATTGGATGCAGAAAATAGGCTTTCGAAATTTTTCTTTA ATTATACTCAAAGTGGTGCTGATATCCAACCTGTCCAAGTTCTTCCTTCT GCCCATTTTGGTGTGGCAAAATAACACGACCGTTTTTGGCCGGAACTTGC ACCATCTTCTGGTCATGGGACATCACCTCTGCTCCCTGGTCCTCGCCTAC CAGGCAGTCGGAGCCACTAGGAAGAACCTTCGATGGTGGGCTCTAACTTT GGTTGTTATAGCTTTCGCCTTCAAGGAAACCGCGAGGCAGTTTGTATCAC TAGTGGTGGAGGACAATTGATTATAGAAGGCTGAAAATAGTAAACCAAAA TTTTATTTAACAAAAATATAACTCTTCAAAGACAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG32442-RB | 920 | CG32442-RB | 27..859 | 2..834 | 4150 | 99.8 | Plus |
CG32442-RA | 1143 | CG32442-RA | 486..1052 | 268..834 | 2820 | 99.8 | Plus |
CG32442-RC | 966 | CG32442-RC | 351..905 | 280..834 | 2760 | 99.8 | Plus |
CG32442-RC | 966 | CG32442-RC | 85..352 | 2..269 | 1340 | 100 | Plus |
CG32442-RA | 1143 | CG32442-RA | 228..487 | 2..261 | 1300 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 21517215..21517641 | 833..407 | 2120 | 99.8 | Minus |
chr3L | 24539361 | chr3L | 21517705..21517845 | 408..268 | 705 | 100 | Minus |
chr3L | 24539361 | chr3L | 21518080..21518220 | 142..2 | 705 | 100 | Minus |
chr3L | 24539361 | chr3L | 21517893..21518020 | 269..142 | 640 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 21528279..21528706 | 834..407 | 2125 | 99.8 | Minus |
3L | 28110227 | 3L | 21528770..21528910 | 408..268 | 705 | 100 | Minus |
3L | 28110227 | 3L | 21529145..21529285 | 142..2 | 705 | 100 | Minus |
3L | 28110227 | 3L | 21528958..21529085 | 269..142 | 640 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 21521379..21521806 | 834..407 | 2125 | 99.7 | Minus |
3L | 28103327 | 3L | 21522245..21522385 | 142..2 | 705 | 100 | Minus |
3L | 28103327 | 3L | 21521870..21522010 | 408..268 | 705 | 100 | Minus |
3L | 28103327 | 3L | 21522058..21522185 | 269..142 | 640 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
297 | 6995 | 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). | 2747..2820 | 722..795 | 108 | 64 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 21517215..21517639 | 409..833 | 99 | <- | Minus |
chr3L | 21517705..21517843 | 270..408 | 100 | <- | Minus |
chr3L | 21517893..21518020 | 142..269 | 100 | <- | Minus |
chr3L | 21518081..21518220 | 1..141 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32442-RA | 1..717 | 46..770 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32442-RA | 1..717 | 46..770 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32442-RA | 1..717 | 46..770 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32442-RA | 1..717 | 46..770 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32442-RA | 1..717 | 46..770 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32442-RB | 20..853 | 1..833 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32442-RB | 20..853 | 1..833 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32442-RB | 47..880 | 1..833 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32442-RB | 20..853 | 1..833 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32442-RB | 47..880 | 1..833 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 21528958..21529085 | 142..269 | 100 | <- | Minus |
3L | 21529146..21529285 | 1..141 | 99 | Minus | |
3L | 21528770..21528908 | 270..408 | 100 | <- | Minus |
3L | 21528280..21528704 | 409..833 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 21528958..21529085 | 142..269 | 100 | <- | Minus |
3L | 21529146..21529285 | 1..141 | 99 | Minus | |
3L | 21528770..21528908 | 270..408 | 100 | <- | Minus |
3L | 21528280..21528704 | 409..833 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 21528958..21529085 | 142..269 | 100 | <- | Minus |
3L | 21529146..21529285 | 1..141 | 99 | Minus | |
3L | 21528770..21528908 | 270..408 | 100 | <- | Minus |
3L | 21528280..21528704 | 409..833 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 21521380..21521804 | 409..833 | 99 | <- | Minus |
arm_3L | 21521870..21522008 | 270..408 | 100 | <- | Minus |
arm_3L | 21522058..21522185 | 142..269 | 100 | <- | Minus |
arm_3L | 21522246..21522385 | 1..141 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 21521380..21521804 | 409..833 | 99 | <- | Minus |
3L | 21521870..21522008 | 270..408 | 100 | <- | Minus |
3L | 21522058..21522185 | 142..269 | 100 | <- | Minus |
3L | 21522246..21522385 | 1..141 | 99 | Minus |
Translation from 3 to 422
> RH17480.hyp LFFGQPNETLNGCKMSEKKRFVCVNCGHRVKELFKKYSNTMKTTQCDNCH QITDKYIEFEEFIILIDALLLDSCAFRHIIYNGDFKVTSSTGRFRWWCCS WNPLRCAAKNCPTLRMPLCMSTKRAFTHIPFKTWEITCS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG32442-PB | 125 | CG32442-PB | 1..125 | 15..139 | 708 | 100 | Plus |
CG32442-PC | 121 | CG32442-PC | 1..121 | 15..139 | 674 | 96.8 | Plus |
CG32442-PA | 238 | CG32442-PA | 1..73 | 15..87 | 393 | 98.6 | Plus |
Translation from 45 to 422
> RH17480.pep MSEKKRFVCVNCGHRVKELFKKYSNTMKTTQCDNCHQITDKYIEFEEFII LIDALLLDSCAFRHIIYNGDFKVTSSTGRFRWWCCSWNPLRCAAKNCPTL RMPLCMSTKRAFTHIPFKTWEITCS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10706-PA | 240 | GF10706-PA | 1..73 | 1..73 | 347 | 84.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13227-PA | 239 | GG13227-PA | 3..72 | 4..73 | 356 | 92.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16742-PA | 240 | GH16742-PA | 7..75 | 5..73 | 261 | 69.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Arv1-PB | 125 | CG32442-PB | 1..125 | 1..125 | 708 | 100 | Plus |
Arv1-PC | 121 | CG32442-PC | 1..121 | 1..125 | 674 | 96.8 | Plus |
Arv1-PA | 238 | CG32442-PA | 1..73 | 1..73 | 393 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13467-PA | 240 | GI13467-PA | 6..75 | 4..73 | 260 | 70 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11902-PA | 206 | GL11902-PA | 1..41 | 33..73 | 201 | 87.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA16907-PA | 238 | GA16907-PA | 1..73 | 1..73 | 326 | 80.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22132-PA | 240 | GM22132-PA | 1..73 | 1..73 | 378 | 94.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12111-PA | 240 | GD12111-PA | 1..73 | 1..73 | 381 | 95.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11830-PA | 240 | GJ11830-PA | 6..75 | 4..73 | 273 | 72.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17511-PA | 240 | GK17511-PA | 7..75 | 5..73 | 331 | 85.5 | Plus |