BDGP Sequence Production Resources |
Search the DGRC for RH17496
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 174 |
Well: | 96 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG12203-RA |
Protein status: | RH17496.pep: gold |
Preliminary Size: | 668 |
Sequenced Size: | 782 |
Gene | Date | Evidence |
---|---|---|
CG12203 | 2001-12-13 | Blastp of sequenced clone |
CG12203 | 2002-01-01 | Sim4 clustering to Release 2 |
CG12203 | 2003-01-01 | Sim4 clustering to Release 3 |
CG12203 | 2008-04-29 | Release 5.5 accounting |
CG12203 | 2008-08-15 | Release 5.9 accounting |
CG12203 | 2008-12-18 | 5.12 accounting |
782 bp (782 high quality bases) assembled on 2001-12-13
GenBank Submission: AY070680
> RH17496.complete GTTCGGCACTGGCGAACAGCTGTTTTCACAATCGGAAAGCGCTTGTGTTC CAAATTTTACGTAATTCGTATTTTGAAGCCGATTTCTGCCGTGTAGCCCC AAACGCCTAGCGAAATGTCGGCCCTCCGCCAAGTGATGTGCAGAAGCACC GCCTCCCTGCAGCTGTACCAGGCCAACAGGGCAGCCGCTGCCCGCTGGGC ATCCACCGCCACGGACGGCGGTCCGCTGGACCCCAAGACGGCCCTGGCCC GCCCCGAAGAGCTGGAGCAGCGCAACAAGCTGAGTGGCAAGATCACCGTG CCGACTGCCGTCAATCTCAGCCCGATCAGCGGCGTTCCGGAGGAGCACAT TCGGGAGCGCCGTGTGCGCATCCATATTCCGCCCAAGAACGCAATGCAGA GCGGCACCGATAACGTGAACACCTGGCAAATCGAGTTCGACAACCGCGAG CGCTGGGAGAATCCGCTCATGGGCTGGGCCTCCAGCGGCGACCCATTGTC CAACATGAACGTGCAGTTCGGATCCCCAGAGGAGGCCATCACGTTCTGCG AACGGAACGGATGGCGCTGGTACGTCGACGGCGCCGCGAAGCCCAAGAAG GAGCGCGTCAAGAACTACGGCATCAACTTTGCCTGGAACAAGCGCACGCG CGTCTCCACCAAGTAGACGCTCCCCGCAGCTAGCCAGGATTATAGACCAC AATTATCTGATTTTTTTTTTGCTTTGTTCATTATCTGAGTACCCAAATAA ACAGTCGGCTGGACTCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 19381476..19381796 | 165..485 | 1590 | 99.7 | Plus |
chrX | 22417052 | chrX | 19381851..19382136 | 481..766 | 1430 | 100 | Plus |
chrX | 22417052 | chrX | 19381226..19381388 | 5..167 | 785 | 98.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 19381223..19381385 | 1..164 | 96 | -> | Plus |
chrX | 19381476..19381796 | 165..485 | 99 | -> | Plus |
chrX | 19381856..19382136 | 486..766 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12203-RA | 1..552 | 115..666 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12203-RA | 1..552 | 115..666 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12203-RA | 1..552 | 115..666 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12203-RA | 1..552 | 115..666 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12203-RA | 1..552 | 115..666 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12203-RA | 3..766 | 4..766 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12203-RA | 3..766 | 4..766 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12203-RA | 4..768 | 1..766 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12203-RA | 3..766 | 4..766 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12203-RA | 4..768 | 1..766 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 19493057..19493337 | 486..766 | 100 | Plus | |
X | 19492677..19492997 | 165..485 | 100 | -> | Plus |
X | 19492424..19492586 | 1..164 | 96 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 19493057..19493337 | 486..766 | 100 | Plus | |
X | 19492677..19492997 | 165..485 | 100 | -> | Plus |
X | 19492424..19492586 | 1..164 | 96 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 19493057..19493337 | 486..766 | 100 | Plus | |
X | 19492677..19492997 | 165..485 | 100 | -> | Plus |
X | 19492424..19492586 | 1..164 | 96 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 19386457..19386619 | 1..164 | 96 | -> | Plus |
arm_X | 19386710..19387030 | 165..485 | 100 | -> | Plus |
arm_X | 19387090..19387370 | 486..766 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 19500775..19501095 | 165..485 | 100 | -> | Plus |
X | 19501155..19501435 | 486..766 | 100 | Plus | |
X | 19500522..19500684 | 1..164 | 96 | -> | Plus |
Translation from 114 to 665
> RH17496.hyp MSALRQVMCRSTASLQLYQANRAAAARWASTATDGGPLDPKTALARPEEL EQRNKLSGKITVPTAVNLSPISGVPEEHIRERRVRIHIPPKNAMQSGTDN VNTWQIEFDNRERWENPLMGWASSGDPLSNMNVQFGSPEEAITFCERNGW RWYVDGAAKPKKERVKNYGINFAWNKRTRVSTK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12203-PA | 183 | CG12203-PA | 1..183 | 1..183 | 977 | 100 | Plus |
Translation from 114 to 665
> RH17496.pep MSALRQVMCRSTASLQLYQANRAAAARWASTATDGGPLDPKTALARPEEL EQRNKLSGKITVPTAVNLSPISGVPEEHIRERRVRIHIPPKNAMQSGTDN VNTWQIEFDNRERWENPLMGWASSGDPLSNMNVQFGSPEEAITFCERNGW RWYVDGAAKPKKERVKNYGINFAWNKRTRVSTK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF20193-PA | 181 | GF20193-PA | 1..181 | 1..183 | 843 | 86.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19227-PA | 184 | GG19227-PA | 1..184 | 1..183 | 945 | 97.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17652-PA | 175 | GH17652-PA | 1..175 | 1..183 | 754 | 75.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ND-18-PA | 183 | CG12203-PA | 1..183 | 1..183 | 977 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16090-PA | 176 | GI16090-PA | 1..176 | 1..183 | 774 | 78.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14531-PA | 181 | GL14531-PA | 1..181 | 1..183 | 795 | 80.9 | Plus |
Dper\GL13999-PA | 182 | GL13999-PA | 1..182 | 1..183 | 692 | 70.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11474-PA | 181 | GA11474-PA | 1..181 | 1..183 | 795 | 80.9 | Plus |
Dpse\GA26927-PA | 182 | GA26927-PA | 1..182 | 1..183 | 692 | 70.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22960-PA | 183 | GM22960-PA | 1..183 | 1..183 | 965 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17444-PA | 183 | GD17444-PA | 1..183 | 1..183 | 962 | 97.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15739-PA | 176 | GJ15739-PA | 1..176 | 1..183 | 764 | 78.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25430-PA | 176 | GK25430-PA | 1..176 | 1..183 | 754 | 77.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE15845-PA | 184 | GE15845-PA | 1..184 | 1..183 | 942 | 96.7 | Plus |