BDGP Sequence Production Resources |
Search the DGRC for RH17657
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 176 |
Well: | 57 |
Vector: | pFlc-1 |
Associated Gene/Transcript | l(3)neo18-RA |
Protein status: | RH17657.pep: gold |
Preliminary Size: | 647 |
Sequenced Size: | 813 |
Gene | Date | Evidence |
---|---|---|
CG9762 | 2001-12-13 | Blastp of sequenced clone |
CG9762 | 2002-01-01 | Sim4 clustering to Release 2 |
CG9762 | 2003-01-01 | Sim4 clustering to Release 3 |
l(3)neo18 | 2008-04-29 | Release 5.5 accounting |
l(3)neo18 | 2008-08-15 | Release 5.9 accounting |
l(3)neo18 | 2008-12-18 | 5.12 accounting |
813 bp (813 high quality bases) assembled on 2001-12-13
GenBank Submission: AY070682
> RH17657.complete GCTGCAAAAAGTGTGACCGTTTGCCGTGCTGCTCGCAACTTTGACACGAC CAGTTCCAAAATATCGTGAGATTTAAGCAAAACTACTAGAAAATGGTCGG TTGGAGCCGTTTGCTGTCGCCGGCGGCGAAGTTCGCCAGCTACCGGGCTG TCCTGCAAGAGCCCGCGTGCCGGAATGCCCTGCACCAACAGCTGCGCAGA ATGGGAGGCGATCATGGACACCACCAAATGATCATCAAGCCATCCCGCTT CCAGTGGGACAAGTTCAAGGATCTGTTGCACTTTTACGTAATGCTCGGCG TCATCCCAGTCACCGCATTGGTTCTCTACGCGAACATCTTTGTGGGACCC GCGCAGCTCGCCGAGATTCCCGAGGGCTATGAGCCCAAGCACTGGGAGTA CGAGAAGCACCCCATCTCGCGCTTTATTTCCCGCTACATTTTGAACTCGG ATCAGCAAAACTACGAGAAATCCCTGCACTATCTCTACGAGGAGAACGAA AAAGCCCAGATTCGACTCCTTGAGGACGAAGTACGTCGCAAGATGTCGGA GCGCAATGATTACCAGGCCTACTACTACCGACCATCGGTGGCCAAGTACC ACAGGATTTCGAAAGAGGCTGCTGACGAGCTGGAGGCTCTGCGCGGAGAC TAGAACCCTTGTAATATTCTTTAAATACCATTGTTAGGATCCCGTTTTGT GGGAAATAAAGTGTGAAATCGACTTCGCAACATCATCTTATTCACATTTA ATAATATAAAAATTACACAGTAGTCGAATAAATACTTAAGACTTAGCAAA AAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
l(3)neo18-RA | 965 | l(3)neo18-RA | 145..943 | 2..800 | 3980 | 99.8 | Plus |
l(3)neo18.a | 910 | l(3)neo18.a | 93..498 | 2..407 | 2015 | 99.7 | Plus |
l(3)neo18.a | 910 | l(3)neo18.a | 516..910 | 406..800 | 1975 | 100 | Plus |
Atg12-RB | 674 | Atg12-RB | 596..674 | 800..722 | 395 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 12128245..12128528 | 797..514 | 1420 | 100 | Minus |
chr3L | 24539361 | chr3L | 12128765..12128995 | 407..177 | 1155 | 100 | Minus |
chr3L | 24539361 | chr3L | 12129066..12129241 | 177..2 | 865 | 99.4 | Minus |
chr3L | 24539361 | chr3L | 12128587..12128695 | 514..406 | 545 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 12137493..12137779 | 800..514 | 1435 | 100 | Minus |
3L | 28110227 | 3L | 12138016..12138246 | 407..177 | 1155 | 100 | Minus |
3L | 28110227 | 3L | 12138317..12138492 | 177..2 | 865 | 99.4 | Minus |
3L | 28110227 | 3L | 12137838..12137946 | 514..406 | 545 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 12130593..12130879 | 800..514 | 1435 | 100 | Minus |
3L | 28103327 | 3L | 12131116..12131346 | 407..177 | 1155 | 100 | Minus |
3L | 28103327 | 3L | 12131417..12131592 | 177..2 | 865 | 99.4 | Minus |
3L | 28103327 | 3L | 12130938..12131046 | 514..406 | 545 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 12128245..12128527 | 515..797 | 100 | <- | Minus |
chr3L | 12128587..12128693 | 408..514 | 100 | <- | Minus |
chr3L | 12128765..12128994 | 178..407 | 100 | <- | Minus |
chr3L | 12129066..12129241 | 1..177 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)neo18-RA | 1..561 | 93..653 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)neo18-RA | 1..561 | 93..653 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)neo18-RA | 1..561 | 93..653 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)neo18-RA | 1..561 | 93..653 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)neo18-RA | 1..561 | 93..653 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)neo18-RA | 91..888 | 1..797 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)neo18-RA | 91..888 | 1..797 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)neo18-RA | 91..888 | 1..797 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)neo18-RA | 91..888 | 1..797 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)neo18-RA | 91..888 | 1..797 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 12137496..12137778 | 515..797 | 100 | <- | Minus |
3L | 12137838..12137944 | 408..514 | 100 | <- | Minus |
3L | 12138016..12138245 | 178..407 | 100 | <- | Minus |
3L | 12138317..12138492 | 1..177 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 12137496..12137778 | 515..797 | 100 | <- | Minus |
3L | 12137838..12137944 | 408..514 | 100 | <- | Minus |
3L | 12138016..12138245 | 178..407 | 100 | <- | Minus |
3L | 12138317..12138492 | 1..177 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 12137496..12137778 | 515..797 | 100 | <- | Minus |
3L | 12137838..12137944 | 408..514 | 100 | <- | Minus |
3L | 12138016..12138245 | 178..407 | 100 | <- | Minus |
3L | 12138317..12138492 | 1..177 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 12130596..12130878 | 515..797 | 100 | <- | Minus |
arm_3L | 12130938..12131044 | 408..514 | 100 | <- | Minus |
arm_3L | 12131116..12131345 | 178..407 | 100 | <- | Minus |
arm_3L | 12131417..12131592 | 1..177 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 12130596..12130878 | 515..797 | 100 | <- | Minus |
3L | 12130938..12131044 | 408..514 | 100 | <- | Minus |
3L | 12131116..12131345 | 178..407 | 100 | <- | Minus |
3L | 12131417..12131592 | 1..177 | 98 | Minus |
Translation from 92 to 652
> RH17657.hyp MVGWSRLLSPAAKFASYRAVLQEPACRNALHQQLRRMGGDHGHHQMIIKP SRFQWDKFKDLLHFYVMLGVIPVTALVLYANIFVGPAQLAEIPEGYEPKH WEYEKHPISRFISRYILNSDQQNYEKSLHYLYEENEKAQIRLLEDEVRRK MSERNDYQAYYYRPSVAKYHRISKEAADELEALRGD*
Translation from 92 to 652
> RH17657.pep MVGWSRLLSPAAKFASYRAVLQEPACRNALHQQLRRMGGDHGHHQMIIKP SRFQWDKFKDLLHFYVMLGVIPVTALVLYANIFVGPAQLAEIPEGYEPKH WEYEKHPISRFISRYILNSDQQNYEKSLHYLYEENEKAQIRLLEDEVRRK MSERNDYQAYYYRPSVAKYHRISKEAADELEALRGD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF25001-PA | 186 | GF25001-PA | 1..186 | 1..186 | 928 | 90.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13853-PA | 186 | GG13853-PA | 1..186 | 1..186 | 959 | 95.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15309-PA | 186 | GH15309-PA | 1..186 | 1..186 | 842 | 80.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ND-SGDH-PB | 186 | CG9762-PB | 1..186 | 1..186 | 989 | 100 | Plus |
ND-SGDH-PA | 186 | CG9762-PA | 1..186 | 1..186 | 989 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12904-PA | 186 | GI12904-PA | 1..186 | 1..186 | 860 | 84.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25017-PA | 186 | GL25017-PA | 1..186 | 1..186 | 896 | 87.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA22016-PA | 186 | GA22016-PA | 1..186 | 1..186 | 896 | 87.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24678-PA | 186 | GM24678-PA | 1..186 | 1..186 | 978 | 97.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12746-PA | 186 | GD12746-PA | 1..186 | 1..186 | 977 | 97.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13044-PA | 186 | GJ13044-PA | 1..186 | 1..186 | 859 | 84.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16642-PA | 186 | GK16642-PA | 1..186 | 1..186 | 895 | 87.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\l(3)neo18-PA | 186 | GE20147-PA | 1..186 | 1..186 | 960 | 95.2 | Plus |