Clone RH18149 Report

Search the DGRC for RH18149

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:181
Well:49
Vector:pFlc-1
Associated Gene/TranscriptCG18622-RA
Protein status:RH18149.pep: gold
Preliminary Size:527
Sequenced Size:1060

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18622 2002-01-01 Sim4 clustering to Release 2
CG18622 2002-06-10 Blastp of sequenced clone
CG18622 2003-01-01 Sim4 clustering to Release 3
CG18622 2008-04-29 Release 5.5 accounting
CG18622 2008-08-15 Release 5.9 accounting
CG18622 2008-12-18 5.12 accounting

Clone Sequence Records

RH18149.complete Sequence

1060 bp (1060 high quality bases) assembled on 2002-06-10

GenBank Submission: AY121702

> RH18149.complete
GATTCATTAAGTTAATTTACCCACGAGCACTCGCAGTCGAAAGAGACCAA
ACGGCAGCACTAGTAGGCGTTATAGTCGAACTCGGAGGGGCGAGCCCCCG
GCGGACTTTCGCTCTCTGAAATACCGCTCGTAAAGCTGCCTGGTACTATG
TTACTCTGGTCTCGTACCGCTGGGGCTGGAATGGAGCACGGCGAGTGGGC
CAGTTGTCGGCAGTCAGCTCCACGCTCTAGACCCCAATAGTTCGGCGCGG
CCTACACGCGGCAAAAGCTCAGCAAGATCGATCCGAATCGAGTCGAATCG
AGTTGAATCGACTTTTCGAGTGTGTGCGAGTGTTATTTTCGTGGCGGTGC
ACGACTACAGCTGTTGTCCAATTCTCGAGCGGCGCTTGGCCTCGAGTTGC
AAATCGCAGCGGGTTTCGAATTGAACTAACTCCCAAAACGGCAGAATGAC
TGGATCAGTGCACGATCCGAAATGGAGCCTGGAGCGCCGCGAGTCCTCTG
GCCATTTGGTGTGGCGCAAGGACTCTCCGGAGTCGAAAGTCCGTTTTCGC
TTCGACGTCGAGGTCCTGGAGTTCGAGAGGCATCCTCATGAGGAGCTGGA
TGACAAAGAGGATCACTTCTCGATGACCAATCTCTCGGCGACAGTGGCCA
TGTGCGCAACTTGTGTTGCCGTGGTGGCCGTCTCCGTGTTCCTGCCCTGG
TATTTGATGGAGAAAGTGGGATCGCTTTAAAAAAAAAAAAAAAAACGGGC
CTCAAGAGCCCGGCTTCTTGTATATAGGTACCCGGACGGTATTAAGTAGA
CTCTTGTACATAAGCAAGCGTAGTTTTAACTATTTGTATATAGTACGTAC
GTTGTATATAGGACCTGTGGTTTTTATAAGGATAGAGTTGGAAAAACTCT
AGGTGCAATACGAGTGCGACAGTGACTGCTAAAGCCGAACTATGGAATGT
GGATTGTATTTTAGGACGTGTACATTCTCATAATTTTAGTCCTATGAAAG
ATCGCAAAAATAGTTAATGGAATAAACGAAATACTTGCCCTTAGAAAAAA
AAAAAAAAAA

RH18149.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:45:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG18622-RA 1148 CG18622-RA 29..1073 2..1046 5225 100 Plus
CG18622.a 852 CG18622.a 143..777 412..1046 3175 100 Plus
CG18622.b 655 CG18622.b 22..655 411..1044 3170 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:44:08
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 12807997..12808584 1044..457 2865 99.1 Minus
chr3R 27901430 chr3R 12812014..12812424 412..2 2055 100 Minus
chr3R 27901430 chr3R 12809052..12809099 458..411 210 95.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:23:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:44:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16983508..16984097 1046..457 2950 100 Minus
3R 32079331 3R 16987528..16987938 412..2 2055 100 Minus
3R 32079331 3R 16984571..16984618 458..411 240 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:05:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 16724339..16724928 1046..457 2950 100 Minus
3R 31820162 3R 16728359..16728769 412..2 2055 100 Minus
3R 31820162 3R 16725402..16725449 458..411 240 100 Minus
Blast to na_te.dros performed on 2019-03-16 23:44:07 has no hits.

RH18149.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:44:44 Download gff for RH18149.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 12807997..12808582 459..1044 99 <- Minus
chr3R 12809052..12809098 412..458 95 <- Minus
chr3R 12812015..12812424 1..411 91   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:42:44 Download gff for RH18149.complete
Subject Subject Range Query Range Percent Splice Strand
CG18622-RA 1..285 446..730 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:39:10 Download gff for RH18149.complete
Subject Subject Range Query Range Percent Splice Strand
CG18622-RA 1..285 446..730 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:23:45 Download gff for RH18149.complete
Subject Subject Range Query Range Percent Splice Strand
CG18622-RA 1..285 446..730 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:16:09 Download gff for RH18149.complete
Subject Subject Range Query Range Percent Splice Strand
CG18622-RA 1..285 446..730 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:57:31 Download gff for RH18149.complete
Subject Subject Range Query Range Percent Splice Strand
CG18622-RA 1..285 446..730 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:43:53 Download gff for RH18149.complete
Subject Subject Range Query Range Percent Splice Strand
CG18622-RA 1..1043 2..1044 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:39:10 Download gff for RH18149.complete
Subject Subject Range Query Range Percent Splice Strand
CG18622-RA 1..1043 2..1044 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:23:45 Download gff for RH18149.complete
Subject Subject Range Query Range Percent Splice Strand
CG18622-RA 1..837 208..1044 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:16:09 Download gff for RH18149.complete
Subject Subject Range Query Range Percent Splice Strand
CG18622-RA 1..1043 2..1044 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:57:31 Download gff for RH18149.complete
Subject Subject Range Query Range Percent Splice Strand
CG18622-RA 1..837 208..1044 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:44:44 Download gff for RH18149.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16983510..16984095 459..1044 100 <- Minus
3R 16984571..16984617 412..458 100 <- Minus
3R 16987529..16987938 1..411 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:44:44 Download gff for RH18149.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16983510..16984095 459..1044 100 <- Minus
3R 16984571..16984617 412..458 100 <- Minus
3R 16987529..16987938 1..411 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:44:44 Download gff for RH18149.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16983510..16984095 459..1044 100 <- Minus
3R 16984571..16984617 412..458 100 <- Minus
3R 16987529..16987938 1..411 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:23:45 Download gff for RH18149.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12809232..12809817 459..1044 100 <- Minus
arm_3R 12810293..12810339 412..458 100 <- Minus
arm_3R 12813251..12813660 1..411 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:52:00 Download gff for RH18149.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16724341..16724926 459..1044 100 <- Minus
3R 16725402..16725448 412..458 100 <- Minus
3R 16728360..16728769 1..411 99   Minus

RH18149.pep Sequence

Translation from 445 to 729

> RH18149.pep
MTGSVHDPKWSLERRESSGHLVWRKDSPESKVRFRFDVEVLEFERHPHEE
LDDKEDHFSMTNLSATVAMCATCVAVVAVSVFLPWYLMEKVGSL*

RH18149.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:00:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17918-PA 94 GF17918-PA 1..94 1..94 473 94.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:00:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16803-PA 94 GG16803-PA 1..94 1..94 477 95.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:00:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18070-PA 94 GH18070-PA 1..94 1..94 406 79.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG18622-PB 94 CG18622-PB 1..94 1..94 501 100 Plus
CG18622-PC 94 CG18622-PC 1..94 1..94 501 100 Plus
CG18622-PA 94 CG18622-PA 1..94 1..94 501 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:00:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23749-PA 94 GI23749-PA 1..94 1..94 425 80.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:00:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22996-PA 94 GL22996-PA 1..94 1..94 445 85.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:00:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15018-PA 94 GA15018-PA 1..94 1..94 447 86.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:00:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15397-PA 94 GM15397-PA 1..94 1..94 488 98.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:00:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20262-PA 94 GD20262-PA 1..94 1..94 488 98.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:00:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10595-PA 94 GJ10595-PA 1..94 1..94 450 88.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:00:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13849-PA 94 GK13849-PA 1..94 1..94 445 88.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:00:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26120-PA 94 GE26120-PA 1..94 1..94 488 98.9 Plus

RH18149.hyp Sequence

Translation from 445 to 729

> RH18149.hyp
MTGSVHDPKWSLERRESSGHLVWRKDSPESKVRFRFDVEVLEFERHPHEE
LDDKEDHFSMTNLSATVAMCATCVAVVAVSVFLPWYLMEKVGSL*

RH18149.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:13:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG18622-PB 94 CG18622-PB 1..94 1..94 501 100 Plus
CG18622-PC 94 CG18622-PC 1..94 1..94 501 100 Plus
CG18622-PA 94 CG18622-PA 1..94 1..94 501 100 Plus