BDGP Sequence Production Resources |
Search the DGRC for RH18149
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 181 |
Well: | 49 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG18622-RA |
Protein status: | RH18149.pep: gold |
Preliminary Size: | 527 |
Sequenced Size: | 1060 |
Gene | Date | Evidence |
---|---|---|
CG18622 | 2002-01-01 | Sim4 clustering to Release 2 |
CG18622 | 2002-06-10 | Blastp of sequenced clone |
CG18622 | 2003-01-01 | Sim4 clustering to Release 3 |
CG18622 | 2008-04-29 | Release 5.5 accounting |
CG18622 | 2008-08-15 | Release 5.9 accounting |
CG18622 | 2008-12-18 | 5.12 accounting |
1060 bp (1060 high quality bases) assembled on 2002-06-10
GenBank Submission: AY121702
> RH18149.complete GATTCATTAAGTTAATTTACCCACGAGCACTCGCAGTCGAAAGAGACCAA ACGGCAGCACTAGTAGGCGTTATAGTCGAACTCGGAGGGGCGAGCCCCCG GCGGACTTTCGCTCTCTGAAATACCGCTCGTAAAGCTGCCTGGTACTATG TTACTCTGGTCTCGTACCGCTGGGGCTGGAATGGAGCACGGCGAGTGGGC CAGTTGTCGGCAGTCAGCTCCACGCTCTAGACCCCAATAGTTCGGCGCGG CCTACACGCGGCAAAAGCTCAGCAAGATCGATCCGAATCGAGTCGAATCG AGTTGAATCGACTTTTCGAGTGTGTGCGAGTGTTATTTTCGTGGCGGTGC ACGACTACAGCTGTTGTCCAATTCTCGAGCGGCGCTTGGCCTCGAGTTGC AAATCGCAGCGGGTTTCGAATTGAACTAACTCCCAAAACGGCAGAATGAC TGGATCAGTGCACGATCCGAAATGGAGCCTGGAGCGCCGCGAGTCCTCTG GCCATTTGGTGTGGCGCAAGGACTCTCCGGAGTCGAAAGTCCGTTTTCGC TTCGACGTCGAGGTCCTGGAGTTCGAGAGGCATCCTCATGAGGAGCTGGA TGACAAAGAGGATCACTTCTCGATGACCAATCTCTCGGCGACAGTGGCCA TGTGCGCAACTTGTGTTGCCGTGGTGGCCGTCTCCGTGTTCCTGCCCTGG TATTTGATGGAGAAAGTGGGATCGCTTTAAAAAAAAAAAAAAAAACGGGC CTCAAGAGCCCGGCTTCTTGTATATAGGTACCCGGACGGTATTAAGTAGA CTCTTGTACATAAGCAAGCGTAGTTTTAACTATTTGTATATAGTACGTAC GTTGTATATAGGACCTGTGGTTTTTATAAGGATAGAGTTGGAAAAACTCT AGGTGCAATACGAGTGCGACAGTGACTGCTAAAGCCGAACTATGGAATGT GGATTGTATTTTAGGACGTGTACATTCTCATAATTTTAGTCCTATGAAAG ATCGCAAAAATAGTTAATGGAATAAACGAAATACTTGCCCTTAGAAAAAA AAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 12807997..12808584 | 1044..457 | 2865 | 99.1 | Minus |
chr3R | 27901430 | chr3R | 12812014..12812424 | 412..2 | 2055 | 100 | Minus |
chr3R | 27901430 | chr3R | 12809052..12809099 | 458..411 | 210 | 95.8 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 16983508..16984097 | 1046..457 | 2950 | 100 | Minus |
3R | 32079331 | 3R | 16987528..16987938 | 412..2 | 2055 | 100 | Minus |
3R | 32079331 | 3R | 16984571..16984618 | 458..411 | 240 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 16724339..16724928 | 1046..457 | 2950 | 100 | Minus |
3R | 31820162 | 3R | 16728359..16728769 | 412..2 | 2055 | 100 | Minus |
3R | 31820162 | 3R | 16725402..16725449 | 458..411 | 240 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 12807997..12808582 | 459..1044 | 99 | <- | Minus |
chr3R | 12809052..12809098 | 412..458 | 95 | <- | Minus |
chr3R | 12812015..12812424 | 1..411 | 91 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18622-RA | 1..285 | 446..730 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18622-RA | 1..285 | 446..730 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18622-RA | 1..285 | 446..730 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18622-RA | 1..285 | 446..730 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18622-RA | 1..285 | 446..730 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18622-RA | 1..1043 | 2..1044 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18622-RA | 1..1043 | 2..1044 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18622-RA | 1..837 | 208..1044 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18622-RA | 1..1043 | 2..1044 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18622-RA | 1..837 | 208..1044 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 16983510..16984095 | 459..1044 | 100 | <- | Minus |
3R | 16984571..16984617 | 412..458 | 100 | <- | Minus |
3R | 16987529..16987938 | 1..411 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 16983510..16984095 | 459..1044 | 100 | <- | Minus |
3R | 16984571..16984617 | 412..458 | 100 | <- | Minus |
3R | 16987529..16987938 | 1..411 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 16983510..16984095 | 459..1044 | 100 | <- | Minus |
3R | 16984571..16984617 | 412..458 | 100 | <- | Minus |
3R | 16987529..16987938 | 1..411 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 12809232..12809817 | 459..1044 | 100 | <- | Minus |
arm_3R | 12810293..12810339 | 412..458 | 100 | <- | Minus |
arm_3R | 12813251..12813660 | 1..411 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 16724341..16724926 | 459..1044 | 100 | <- | Minus |
3R | 16725402..16725448 | 412..458 | 100 | <- | Minus |
3R | 16728360..16728769 | 1..411 | 99 | Minus |
Translation from 445 to 729
> RH18149.pep MTGSVHDPKWSLERRESSGHLVWRKDSPESKVRFRFDVEVLEFERHPHEE LDDKEDHFSMTNLSATVAMCATCVAVVAVSVFLPWYLMEKVGSL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17918-PA | 94 | GF17918-PA | 1..94 | 1..94 | 473 | 94.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16803-PA | 94 | GG16803-PA | 1..94 | 1..94 | 477 | 95.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18070-PA | 94 | GH18070-PA | 1..94 | 1..94 | 406 | 79.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG18622-PB | 94 | CG18622-PB | 1..94 | 1..94 | 501 | 100 | Plus |
CG18622-PC | 94 | CG18622-PC | 1..94 | 1..94 | 501 | 100 | Plus |
CG18622-PA | 94 | CG18622-PA | 1..94 | 1..94 | 501 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23749-PA | 94 | GI23749-PA | 1..94 | 1..94 | 425 | 80.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22996-PA | 94 | GL22996-PA | 1..94 | 1..94 | 445 | 85.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15018-PA | 94 | GA15018-PA | 1..94 | 1..94 | 447 | 86.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15397-PA | 94 | GM15397-PA | 1..94 | 1..94 | 488 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20262-PA | 94 | GD20262-PA | 1..94 | 1..94 | 488 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10595-PA | 94 | GJ10595-PA | 1..94 | 1..94 | 450 | 88.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13849-PA | 94 | GK13849-PA | 1..94 | 1..94 | 445 | 88.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE26120-PA | 94 | GE26120-PA | 1..94 | 1..94 | 488 | 98.9 | Plus |
Translation from 445 to 729
> RH18149.hyp MTGSVHDPKWSLERRESSGHLVWRKDSPESKVRFRFDVEVLEFERHPHEE LDDKEDHFSMTNLSATVAMCATCVAVVAVSVFLPWYLMEKVGSL*