RH18150.complete Sequence
760 bp (760 high quality bases) assembled on 2004-07-25
GenBank Submission: BT015190
> RH18150.complete
ATTACCATAAAAATAAATTACTTAACAATAAATAGCAAGTGAAATAAAAA
GAGGTTTTATTAGGTTTTTTTAAAAGTACTTTCGAGCAGACGATGAGCTT
TGCTCTTAGATTGGGATCTTCAATCGGGTGTTTTCACCGTACGATCTTAG
GTCGTGACATAATTCAAAGGAAAAGTCATGTGGTATCTTACCGCAATGGC
CCCCCTCCCCATTCAAAGGCAACTAAAATTGGTGCTTTAACTGTTGGAGG
AGCTATGTGGTGGTGGGTAATCTGGCACTTATGGCATGAACCTGACCATA
TAACGGGGGAATTTGATTATCCTAACTCAAGGAAATGGAGCAACACAGAG
TTGGGTGTTCCAAAGGATGGATTTTAAACATTATATGTCCAAGCTTACTC
CATAAATATTGATTAAAATGCGATATGTAGGCATGTAGTTACATTATTCT
GCTTTGACTTATTTGTTACATAATACTCGGTCCACATTGAGTTTTTTTTA
CCCAATCAACATGTACATATGTACAAATTAACCAGTTTCCTGGTGTTATG
TTTATAGTATTTAGCGTCGATTTCCGGACGCCGGTGGCTTCACAAATACA
CGACGGAGTAACTTTTGAAAAACTTTATTGAGCAGTGCAAGTGCTGCTGT
ACGAATATATATATATATATATATATATATATATATATATATATATATAT
AAATATACGAATACAAGAATGCAAATTAAGAGCTAAAATGAAAACAAAAA
AAAAAAAAAA
RH18150.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:36:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40002.a | 1258 | CG40002.a | 61..813 | 1..753 | 3750 | 99.8 | Plus |
CG40002-RA | 813 | CG40002-RA | 61..813 | 1..753 | 3750 | 99.8 | Plus |
CG40472-RC | 484 | CG40472-RC | 97..484 | 54..442 | 1830 | 98.4 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:54:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3LHet | 2555433 | chr3LHet | 460009..460449 | 305..745 | 2205 | 100 | Plus |
chr3LHet | 2555433 | chr3LHet | 410926..411330 | 305..707 | 1865 | 98.5 | Plus |
chr3LHet | 2555433 | chr3LHet | 459585..459766 | 1..182 | 910 | 100 | Plus |
chr3LHet | 2555433 | chr3LHet | 410736..410860 | 182..306 | 625 | 100 | Plus |
chr3LHet | 2555433 | chr3LHet | 459820..459944 | 182..306 | 625 | 100 | Plus |
chr3LHet | 2555433 | chr3LHet | 410555..410682 | 54..182 | 535 | 96.1 | Plus |
chr3LHet | 2555433 | chr3LHet | 411314..411392 | 667..745 | 380 | 98.7 | Plus |
chr2RHet | 3288813 | chr2RHet | 1301939..1302066 | 522..649 | 275 | 84.5 | Plus |
chr2R | 21145070 | chr2R | 648703..648812 | 649..544 | 270 | 87.3 | Minus |
chr2RHet | 3288813 | chr2RHet | 1311004..1311134 | 526..649 | 265 | 85.5 | Plus |
chrX | 22417052 | chrX | 21521227..21521350 | 525..646 | 250 | 85.6 | Plus |
chr2R | 21145070 | chr2R | 702591..702701 | 544..649 | 245 | 85.6 | Plus |
chr3LHet | 2555433 | chr3LHet | 1335573..1335710 | 518..649 | 240 | 83.3 | Plus |
chrU | 10048995 | chrU | 3071867..3072004 | 649..518 | 240 | 83.3 | Minus |
chr2R | 21145070 | chr2R | 20941..21057 | 656..544 | 230 | 83.8 | Minus |
chr3LHet | 2555433 | chr3LHet | 1342970..1343064 | 527..616 | 195 | 85.3 | Plus |
chr3LHet | 2555433 | chr3LHet | 479050..479093 | 700..743 | 190 | 95.5 | Plus |
chr2R | 21145070 | chr2R | 648636..648681 | 745..700 | 185 | 93.5 | Minus |
chr2R | 21145070 | chr2R | 702723..702768 | 700..745 | 185 | 93.5 | Plus |
chr2RHet | 3288813 | chr2RHet | 121265..121322 | 594..649 | 180 | 91.4 | Plus |
chr3RHet | 2517486 | chr3RHet | 799528..799637 | 649..544 | 180 | 81.8 | Minus |
chr3L | 24539361 | chr3L | 23646149..23646206 | 649..594 | 180 | 91.4 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 21:23:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CR40472-RB | 706 | CR40472-RB | 97..706 | 54..664 | 2940 | 99 | Plus |
CR40472-RA | 660 | CR40472-RA | 192..660 | 219..688 | 2280 | 99.3 | Plus |
CR40472-RA | 660 | CR40472-RA | 65..192 | 54..182 | 545 | 96.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:54:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 24976678..24977126 | 305..753 | 2230 | 99.8 | Plus |
3L | 28110227 | 3L | 24927597..24928001 | 305..707 | 1865 | 98.5 | Plus |
3L | 28110227 | 3L | 24976254..24976435 | 1..182 | 910 | 100 | Plus |
3L | 28110227 | 3L | 24927407..24927531 | 182..306 | 625 | 100 | Plus |
3L | 28110227 | 3L | 24976489..24976613 | 182..306 | 625 | 100 | Plus |
3L | 28110227 | 3L | 24927226..24927353 | 54..182 | 535 | 96.1 | Plus |
3L | 28110227 | 3L | 24927985..24928071 | 667..753 | 405 | 97.7 | Plus |
2R | 25286936 | 2R | 2531200..2531327 | 522..649 | 275 | 84.5 | Plus |
2R | 25286936 | 2R | 2540265..2540395 | 526..649 | 265 | 85.5 | Plus |
2R | 25286936 | 2R | 4761118..4761228 | 649..544 | 260 | 86.5 | Minus |
X | 23542271 | X | 21656069..21656192 | 525..646 | 250 | 85.6 | Plus |
2R | 25286936 | 2R | 4815021..4815131 | 544..649 | 245 | 85.6 | Plus |
3L | 28110227 | 3L | 25952914..25953051 | 518..649 | 240 | 83.3 | Plus |
3R | 32079331 | 3R | 643513..643650 | 518..649 | 240 | 83.3 | Plus |
2R | 25286936 | 2R | 4133437..4133553 | 656..544 | 230 | 83.8 | Minus |
3L | 28110227 | 3L | 25960311..25960405 | 527..616 | 195 | 85.3 | Plus |
3L | 28110227 | 3L | 24995722..24995765 | 700..743 | 190 | 95.5 | Plus |
2R | 25286936 | 2R | 4761047..4761096 | 749..700 | 190 | 92 | Minus |
2R | 25286936 | 2R | 4815153..4815202 | 700..749 | 190 | 92 | Plus |
3L | 28110227 | 3L | 23657239..23657296 | 649..594 | 180 | 91.4 | Minus |
2R | 25286936 | 2R | 994524..994581 | 594..649 | 180 | 91.4 | Plus |
2R | 25286936 | 2R | 2362554..2362601 | 749..702 | 180 | 91.7 | Minus |
2R | 25286936 | 2R | 2403402..2403449 | 749..702 | 180 | 91.7 | Minus |
2R | 25286936 | 2R | 2423076..2423123 | 749..702 | 180 | 91.7 | Minus |
3R | 32079331 | 3R | 2097000..2097109 | 649..544 | 180 | 81.8 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:04:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 24969778..24970226 | 305..753 | 2230 | 99.7 | Plus |
3L | 28103327 | 3L | 24920697..24921101 | 305..707 | 1885 | 98.5 | Plus |
3L | 28103327 | 3L | 24969354..24969535 | 1..182 | 910 | 100 | Plus |
3L | 28103327 | 3L | 24969589..24969713 | 182..306 | 625 | 100 | Plus |
3L | 28103327 | 3L | 24920507..24920631 | 182..306 | 625 | 100 | Plus |
3L | 28103327 | 3L | 24920326..24920453 | 54..182 | 545 | 96.1 | Plus |
3L | 28103327 | 3L | 24921073..24921171 | 656..753 | 410 | 95.9 | Plus |
2R | 25260384 | 2R | 2531200..2531327 | 522..649 | 295 | 84.4 | Plus |
2R | 25260384 | 2R | 4762317..4762427 | 649..544 | 280 | 86.4 | Minus |
X | 23527363 | X | 21641161..21641284 | 525..646 | 280 | 85.6 | Plus |
Unmapped_scaffold_39 | 40272 | Unmapped_scaffold_39 | 15102..15239 | 649..518 | 270 | 83.3 | Minus |
3R | 31820162 | 3R | 441091..441228 | 518..649 | 270 | 83.3 | Plus |
2R | 25260384 | 2R | 4816220..4816330 | 544..649 | 265 | 85.5 | Plus |
3L | 28103327 | 3L | 25953411..25953539 | 527..649 | 225 | 82.1 | Plus |
3L | 28103327 | 3L | 24988822..24988865 | 700..743 | 190 | 95.4 | Plus |
3L | 28103327 | 3L | 23650339..23650396 | 649..594 | 190 | 91.3 | Minus |
2R | 25260384 | 2R | 4816352..4816401 | 700..749 | 190 | 92 | Plus |
2R | 25260384 | 2R | 994524..994581 | 594..649 | 190 | 91.3 | Plus |
2R | 25260384 | 2R | 4762246..4762295 | 749..700 | 190 | 92 | Minus |
2R | 25260384 | 2R | 2531355..2531406 | 706..757 | 170 | 88.4 | Plus |
2R | 25260384 | 2R | 2540423..2540466 | 706..749 | 160 | 90.9 | Plus |
Blast to na_te.dros performed on 2019-03-15 22:54:07 has no hits.
RH18150.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:55:25 Download gff for
RH18150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3LHet | 459585..459765 | 1..181 | 100 | -> | Plus |
chr3LHet | 459820..459943 | 182..305 | 100 | -> | Plus |
chr3LHet | 460010..460449 | 306..745 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:42:45 Download gff for
RH18150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40002-RA | 1..285 | 93..377 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:59:54 Download gff for
RH18150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40472-RC | 1..285 | 93..377 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:35:49 Download gff for
RH18150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40472-RC | 1..285 | 93..377 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:24:34 Download gff for
RH18150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40002-RA | 1..285 | 93..377 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:37:53 Download gff for
RH18150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40002-RA | 1..285 | 93..377 | 100 | | Plus |
Sim4 to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 21:23:53 Download gff for
RH18150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CR40472-RB | 97..706 | 54..664 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:25:37 Download gff for
RH18150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40002-RA | 1..745 | 1..745 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:59:53 Download gff for
RH18150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40002-RA | 1..745 | 1..745 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:35:49 Download gff for
RH18150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40002-RA | 1..745 | 1..745 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:24:34 Download gff for
RH18150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40002-RA | 1..745 | 1..745 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:37:53 Download gff for
RH18150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40002-RA | 1..745 | 1..745 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:55:25 Download gff for
RH18150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 24976254..24976434 | 1..181 | 100 | -> | Plus |
3L | 24976489..24976612 | 182..305 | 100 | -> | Plus |
3L | 24976679..24977118 | 306..745 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:55:25 Download gff for
RH18150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 24976254..24976434 | 1..181 | 100 | -> | Plus |
3L | 24976489..24976612 | 182..305 | 100 | -> | Plus |
3L | 24976679..24977118 | 306..745 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:55:25 Download gff for
RH18150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 24976254..24976434 | 1..181 | 100 | -> | Plus |
3L | 24976489..24976612 | 182..305 | 100 | -> | Plus |
3L | 24976679..24977118 | 306..745 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:35:49 Download gff for
RH18150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3LHet | 459586..459766 | 1..181 | 100 | -> | Plus |
3LHet | 459821..459944 | 182..305 | 100 | -> | Plus |
3LHet | 460011..460450 | 306..745 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:59:53 Download gff for
RH18150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 24969779..24970218 | 306..745 | 100 | | Plus |
3L | 24969354..24969534 | 1..181 | 100 | -> | Plus |
3L | 24969589..24969712 | 182..305 | 100 | -> | Plus |
RH18150.hyp Sequence
Translation from 92 to 376
> RH18150.hyp
MSFALRLGSSIGCFHRTILGRDIIQRKSHVVSYRNGPPPHSKATKIGALT
VGGAMWWWVIWHLWHEPDHITGEFDYPNSRKWSNTELGVPKDGF*
RH18150.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:25:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40472-PC | 94 | CR40472-PC | 1..94 | 1..94 | 535 | 100 | Plus |
CG40002-PB | 94 | CG40002-PB | 1..94 | 1..94 | 535 | 100 | Plus |
CG40002-PA | 94 | CG40002-PA | 1..94 | 1..94 | 535 | 100 | Plus |
RH18150.pep Sequence
Translation from 92 to 376
> RH18150.pep
MSFALRLGSSIGCFHRTILGRDIIQRKSHVVSYRNGPPPHSKATKIGALT
VGGAMWWWVIWHLWHEPDHITGEFDYPNSRKWSNTELGVPKDGF*
RH18150.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:35:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF23100-PA | 96 | GF23100-PA | 10..95 | 7..92 | 357 | 73.3 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:35:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG16312-PA | 94 | GG16312-PA | 1..94 | 1..94 | 452 | 88.3 | Plus |
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:35:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dgri\GH11528-PA | 91 | GH11528-PA | 21..90 | 23..92 | 304 | 75.7 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:07:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40472-PC | 94 | CR40472-PC | 1..94 | 1..94 | 535 | 100 | Plus |
ND-AGGG-PB | 94 | CG40002-PB | 1..94 | 1..94 | 535 | 100 | Plus |
ND-AGGG-PA | 94 | CG40002-PA | 1..94 | 1..94 | 535 | 100 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:35:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA17837-PA | 97 | GA17837-PA | 8..95 | 1..92 | 341 | 67.4 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:35:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK10846-PA | 96 | GK10846-PA | 15..95 | 12..92 | 339 | 72.8 | Plus |