Clone RH18150 Report

Search the DGRC for RH18150

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:181
Well:50
Vector:pFlc-1
Associated Gene/TranscriptCG40002-RA
Protein status:RH18150.pep: gold
Sequenced Size:760

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG40002 2004-07-25 Blastp of sequenced clone
CG40002 2008-04-29 Release 5.5 accounting
CG40002 2008-08-15 Release 5.9 accounting
CG40002 2008-12-18 5.12 accounting

Clone Sequence Records

RH18150.complete Sequence

760 bp (760 high quality bases) assembled on 2004-07-25

GenBank Submission: BT015190

> RH18150.complete
ATTACCATAAAAATAAATTACTTAACAATAAATAGCAAGTGAAATAAAAA
GAGGTTTTATTAGGTTTTTTTAAAAGTACTTTCGAGCAGACGATGAGCTT
TGCTCTTAGATTGGGATCTTCAATCGGGTGTTTTCACCGTACGATCTTAG
GTCGTGACATAATTCAAAGGAAAAGTCATGTGGTATCTTACCGCAATGGC
CCCCCTCCCCATTCAAAGGCAACTAAAATTGGTGCTTTAACTGTTGGAGG
AGCTATGTGGTGGTGGGTAATCTGGCACTTATGGCATGAACCTGACCATA
TAACGGGGGAATTTGATTATCCTAACTCAAGGAAATGGAGCAACACAGAG
TTGGGTGTTCCAAAGGATGGATTTTAAACATTATATGTCCAAGCTTACTC
CATAAATATTGATTAAAATGCGATATGTAGGCATGTAGTTACATTATTCT
GCTTTGACTTATTTGTTACATAATACTCGGTCCACATTGAGTTTTTTTTA
CCCAATCAACATGTACATATGTACAAATTAACCAGTTTCCTGGTGTTATG
TTTATAGTATTTAGCGTCGATTTCCGGACGCCGGTGGCTTCACAAATACA
CGACGGAGTAACTTTTGAAAAACTTTATTGAGCAGTGCAAGTGCTGCTGT
ACGAATATATATATATATATATATATATATATATATATATATATATATAT
AAATATACGAATACAAGAATGCAAATTAAGAGCTAAAATGAAAACAAAAA
AAAAAAAAAA

RH18150.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:36:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG40002.a 1258 CG40002.a 61..813 1..753 3750 99.8 Plus
CG40002-RA 813 CG40002-RA 61..813 1..753 3750 99.8 Plus
CG40472-RC 484 CG40472-RC 97..484 54..442 1830 98.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:54:08
Subject Length Description Subject Range Query Range Score Percent Strand
chr3LHet 2555433 chr3LHet 460009..460449 305..745 2205 100 Plus
chr3LHet 2555433 chr3LHet 410926..411330 305..707 1865 98.5 Plus
chr3LHet 2555433 chr3LHet 459585..459766 1..182 910 100 Plus
chr3LHet 2555433 chr3LHet 410736..410860 182..306 625 100 Plus
chr3LHet 2555433 chr3LHet 459820..459944 182..306 625 100 Plus
chr3LHet 2555433 chr3LHet 410555..410682 54..182 535 96.1 Plus
chr3LHet 2555433 chr3LHet 411314..411392 667..745 380 98.7 Plus
chr2RHet 3288813 chr2RHet 1301939..1302066 522..649 275 84.5 Plus
chr2R 21145070 chr2R 648703..648812 649..544 270 87.3 Minus
chr2RHet 3288813 chr2RHet 1311004..1311134 526..649 265 85.5 Plus
chrX 22417052 chrX 21521227..21521350 525..646 250 85.6 Plus
chr2R 21145070 chr2R 702591..702701 544..649 245 85.6 Plus
chr3LHet 2555433 chr3LHet 1335573..1335710 518..649 240 83.3 Plus
chrU 10048995 chrU 3071867..3072004 649..518 240 83.3 Minus
chr2R 21145070 chr2R 20941..21057 656..544 230 83.8 Minus
chr3LHet 2555433 chr3LHet 1342970..1343064 527..616 195 85.3 Plus
chr3LHet 2555433 chr3LHet 479050..479093 700..743 190 95.5 Plus
chr2R 21145070 chr2R 648636..648681 745..700 185 93.5 Minus
chr2R 21145070 chr2R 702723..702768 700..745 185 93.5 Plus
chr2RHet 3288813 chr2RHet 121265..121322 594..649 180 91.4 Plus
chr3RHet 2517486 chr3RHet 799528..799637 649..544 180 81.8 Minus
chr3L 24539361 chr3L 23646149..23646206 649..594 180 91.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 21:23:52
Subject Length Description Subject Range Query Range Score Percent Strand
CR40472-RB 706 CR40472-RB 97..706 54..664 2940 99 Plus
CR40472-RA 660 CR40472-RA 192..660 219..688 2280 99.3 Plus
CR40472-RA 660 CR40472-RA 65..192 54..182 545 96.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:54:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 24976678..24977126 305..753 2230 99.8 Plus
3L 28110227 3L 24927597..24928001 305..707 1865 98.5 Plus
3L 28110227 3L 24976254..24976435 1..182 910 100 Plus
3L 28110227 3L 24927407..24927531 182..306 625 100 Plus
3L 28110227 3L 24976489..24976613 182..306 625 100 Plus
3L 28110227 3L 24927226..24927353 54..182 535 96.1 Plus
3L 28110227 3L 24927985..24928071 667..753 405 97.7 Plus
2R 25286936 2R 2531200..2531327 522..649 275 84.5 Plus
2R 25286936 2R 2540265..2540395 526..649 265 85.5 Plus
2R 25286936 2R 4761118..4761228 649..544 260 86.5 Minus
X 23542271 X 21656069..21656192 525..646 250 85.6 Plus
2R 25286936 2R 4815021..4815131 544..649 245 85.6 Plus
3L 28110227 3L 25952914..25953051 518..649 240 83.3 Plus
3R 32079331 3R 643513..643650 518..649 240 83.3 Plus
2R 25286936 2R 4133437..4133553 656..544 230 83.8 Minus
3L 28110227 3L 25960311..25960405 527..616 195 85.3 Plus
3L 28110227 3L 24995722..24995765 700..743 190 95.5 Plus
2R 25286936 2R 4761047..4761096 749..700 190 92 Minus
2R 25286936 2R 4815153..4815202 700..749 190 92 Plus
3L 28110227 3L 23657239..23657296 649..594 180 91.4 Minus
2R 25286936 2R 994524..994581 594..649 180 91.4 Plus
2R 25286936 2R 2362554..2362601 749..702 180 91.7 Minus
2R 25286936 2R 2403402..2403449 749..702 180 91.7 Minus
2R 25286936 2R 2423076..2423123 749..702 180 91.7 Minus
3R 32079331 3R 2097000..2097109 649..544 180 81.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:04:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 24969778..24970226 305..753 2230 99.7 Plus
3L 28103327 3L 24920697..24921101 305..707 1885 98.5 Plus
3L 28103327 3L 24969354..24969535 1..182 910 100 Plus
3L 28103327 3L 24969589..24969713 182..306 625 100 Plus
3L 28103327 3L 24920507..24920631 182..306 625 100 Plus
3L 28103327 3L 24920326..24920453 54..182 545 96.1 Plus
3L 28103327 3L 24921073..24921171 656..753 410 95.9 Plus
2R 25260384 2R 2531200..2531327 522..649 295 84.4 Plus
2R 25260384 2R 4762317..4762427 649..544 280 86.4 Minus
X 23527363 X 21641161..21641284 525..646 280 85.6 Plus
Unmapped_scaffold_39 40272 Unmapped_scaffold_39 15102..15239 649..518 270 83.3 Minus
3R 31820162 3R 441091..441228 518..649 270 83.3 Plus
2R 25260384 2R 4816220..4816330 544..649 265 85.5 Plus
3L 28103327 3L 25953411..25953539 527..649 225 82.1 Plus
3L 28103327 3L 24988822..24988865 700..743 190 95.4 Plus
3L 28103327 3L 23650339..23650396 649..594 190 91.3 Minus
2R 25260384 2R 4816352..4816401 700..749 190 92 Plus
2R 25260384 2R 994524..994581 594..649 190 91.3 Plus
2R 25260384 2R 4762246..4762295 749..700 190 92 Minus
2R 25260384 2R 2531355..2531406 706..757 170 88.4 Plus
2R 25260384 2R 2540423..2540466 706..749 160 90.9 Plus
Blast to na_te.dros performed on 2019-03-15 22:54:07 has no hits.

RH18150.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:55:25 Download gff for RH18150.complete
Subject Subject Range Query Range Percent Splice Strand
chr3LHet 459585..459765 1..181 100 -> Plus
chr3LHet 459820..459943 182..305 100 -> Plus
chr3LHet 460010..460449 306..745 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:42:45 Download gff for RH18150.complete
Subject Subject Range Query Range Percent Splice Strand
CG40002-RA 1..285 93..377 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:59:54 Download gff for RH18150.complete
Subject Subject Range Query Range Percent Splice Strand
CG40472-RC 1..285 93..377 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:35:49 Download gff for RH18150.complete
Subject Subject Range Query Range Percent Splice Strand
CG40472-RC 1..285 93..377 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:24:34 Download gff for RH18150.complete
Subject Subject Range Query Range Percent Splice Strand
CG40002-RA 1..285 93..377 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:37:53 Download gff for RH18150.complete
Subject Subject Range Query Range Percent Splice Strand
CG40002-RA 1..285 93..377 100   Plus
Sim4 to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 21:23:53 Download gff for RH18150.complete
Subject Subject Range Query Range Percent Splice Strand
CR40472-RB 97..706 54..664 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:25:37 Download gff for RH18150.complete
Subject Subject Range Query Range Percent Splice Strand
CG40002-RA 1..745 1..745 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:59:53 Download gff for RH18150.complete
Subject Subject Range Query Range Percent Splice Strand
CG40002-RA 1..745 1..745 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:35:49 Download gff for RH18150.complete
Subject Subject Range Query Range Percent Splice Strand
CG40002-RA 1..745 1..745 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:24:34 Download gff for RH18150.complete
Subject Subject Range Query Range Percent Splice Strand
CG40002-RA 1..745 1..745 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:37:53 Download gff for RH18150.complete
Subject Subject Range Query Range Percent Splice Strand
CG40002-RA 1..745 1..745 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:55:25 Download gff for RH18150.complete
Subject Subject Range Query Range Percent Splice Strand
3L 24976254..24976434 1..181 100 -> Plus
3L 24976489..24976612 182..305 100 -> Plus
3L 24976679..24977118 306..745 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:55:25 Download gff for RH18150.complete
Subject Subject Range Query Range Percent Splice Strand
3L 24976254..24976434 1..181 100 -> Plus
3L 24976489..24976612 182..305 100 -> Plus
3L 24976679..24977118 306..745 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:55:25 Download gff for RH18150.complete
Subject Subject Range Query Range Percent Splice Strand
3L 24976254..24976434 1..181 100 -> Plus
3L 24976489..24976612 182..305 100 -> Plus
3L 24976679..24977118 306..745 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:35:49 Download gff for RH18150.complete
Subject Subject Range Query Range Percent Splice Strand
3LHet 459586..459766 1..181 100 -> Plus
3LHet 459821..459944 182..305 100 -> Plus
3LHet 460011..460450 306..745 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:59:53 Download gff for RH18150.complete
Subject Subject Range Query Range Percent Splice Strand
3L 24969779..24970218 306..745 100   Plus
3L 24969354..24969534 1..181 100 -> Plus
3L 24969589..24969712 182..305 100 -> Plus

RH18150.hyp Sequence

Translation from 92 to 376

> RH18150.hyp
MSFALRLGSSIGCFHRTILGRDIIQRKSHVVSYRNGPPPHSKATKIGALT
VGGAMWWWVIWHLWHEPDHITGEFDYPNSRKWSNTELGVPKDGF*

RH18150.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:25:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG40472-PC 94 CR40472-PC 1..94 1..94 535 100 Plus
CG40002-PB 94 CG40002-PB 1..94 1..94 535 100 Plus
CG40002-PA 94 CG40002-PA 1..94 1..94 535 100 Plus

RH18150.pep Sequence

Translation from 92 to 376

> RH18150.pep
MSFALRLGSSIGCFHRTILGRDIIQRKSHVVSYRNGPPPHSKATKIGALT
VGGAMWWWVIWHLWHEPDHITGEFDYPNSRKWSNTELGVPKDGF*

RH18150.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:35:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23100-PA 96 GF23100-PA 10..95 7..92 357 73.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:35:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16312-PA 94 GG16312-PA 1..94 1..94 452 88.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:35:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11528-PA 91 GH11528-PA 21..90 23..92 304 75.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:07:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG40472-PC 94 CR40472-PC 1..94 1..94 535 100 Plus
ND-AGGG-PB 94 CG40002-PB 1..94 1..94 535 100 Plus
ND-AGGG-PA 94 CG40002-PA 1..94 1..94 535 100 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:35:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17837-PA 97 GA17837-PA 8..95 1..92 341 67.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:35:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10846-PA 96 GK10846-PA 15..95 12..92 339 72.8 Plus