RH18724.complete Sequence
3136 bp (3136 high quality bases) assembled on 2004-01-14
GenBank Submission: BT011435
> RH18724.complete
CATCGGCCCCATCTCAGAGTGTTGCAAATAGTGGAATAGTCCAACGTACG
TCGTAAATATTTCAACTGCAACAGCAGCAACAACAGCGAGGCAGCTCCAG
CAACCATAACGAGCACAAATAGCAAACAAGGAGCAGGCGACAAGGCGAGA
AGGAGCCAAGGAGAAGGGAGAAAGTAGAAAGTAGATGGGTGGAACGGTTG
ATGGAGAAGGGAGCGATGGAGCGAGGGAGCGAGGGAGCGAGGGAGCGAGG
GAGGCGGCGAATCGATAGATTGCACCTGGTACATGCCACGCTACGCAAAA
AGTGTCCCCAGTTGTCCCCAGATCCTTCGGAATGAGCAGAACCTTTAACA
ACCTACGACACCAACAAAACCAGCAAACAACAATAATAACACGCAGCAGC
AACAAAGACAATAAACGAGCAAAAAGGCGCCCTCTATCGGTGGATACACT
AAACAAAACGCAGATGAGATATCTATGAGATATAAGATTCAATATCTCTC
AAATTTATATTATCCTATGCACTTCTTAAAGCTTATTTTGGGGATTCAAA
AGATTCTTGTTTACTTTTTGGCATGCAATTCTAAGGTTTTCAACGATTTT
CTTCCAGTGCAGCTGCAACTTTTGCCATCGCCTTCAGTTTCTTCTCCTCT
GTCGCCTTTTGGTCTATGCTCAGCTTTGAGCTCAGCAGTTTTTGGGTTCC
AATTCGCCACCCCTAGTCCCAGCCCCACCCCCTCTGTCACACCCCTAAGC
CCTACCCCGTTTCCCCCCGTTCCCCTCTACCCTTAGTCCGCAATCCATGC
GAAAATTTGAAGCGATTTATTTACTTTTTGCCATTGCCATTTGCCGTTTC
CTCGTGTCGTTGTATTTGCCGCTTTGCTCGCACTCCCGTTCGTCCTTCTC
CCCATTTATTCACCCCTTTCTCCAGCTTTCTTTCCTTGGATTCAGCTTCT
TCGTCGCTTTCTGGATGCGGTGCAGCTACAAATTGAGGCATATTGGAATG
GAAGGGCACTAAAGTATTTGCCTTATTGATTTGACAGCATCGGATTCAAT
GTAGCGATAAGTTCATAATGGAAACGGATCTTTGAACCAGGGATTTGGCC
GGTGCTCGGGAATTCGAAGATCGGGCTATAAGTTTCACTATCACAGGACA
CTGAAACTGGGTGAGGATAATCTACGCCCAAGTTGATCAAAAATATTCAA
CAAATTTCTTAATTAGCTTATGCAATTTCTAAGCGAGCGCAACGTGCAAC
GTGCGGAACATGACTGCATGGACAGGTGAACCAATTAAATTTGTCAAATT
TCTGAATAATTCATAAAGGTTTTCATTCGGCTTTATTTATGCAGGGACAC
CAATTAAACATTTTGACTGCACTTGGCCAAATGGACACGCATGTTTTTCC
AAGGCTACCACGCCTTGTTCTGATCTGACATCCTAGTTCAAAATTATATT
ATAATATATATACTCAAAAATATGACAAAAATAAAAGTTAAGTATATAAT
AAAGGAACATTCTCATTAACTATTGTAGAATTAAACTTGAATGCCTGGCT
CACGGAAAAGTAATAGAATTTTTGTATTGATCTTGCATATCCTTCTGCTT
CCTTTACAGGATATCCGCTGGGTCGACTAGCAACGTAACGTAAATAGTAG
CTGCGCTGGTTGTTTTCTACTTTATTGCACCGATGGTAATGGTCTTGTTT
TTCATTTTTAACATTTTTTTCCTACCCGTTTTTTGTTTGTTTGGATTACA
TCGTTGCCGTCGCCGTTGCCGTCACACCGTCAATTCGTTCGCTTTTCCTT
TTTGGTTTTTCATTTTCATTTTCCATTTTCCATTTTATTTGGGCGCATTT
GCAGCGTTATGACAAACAAGTGTCCATTTATTTGCCAAATTTAATGCTTC
ACCATTTTGCCAGGACTTCGCCATCCCGTTCCCTTCAGCTCCGTGTAGTC
TAGCCCCTCGTTGGTGACAAATTATCCTGCTTCGATTTCTCGGAGACTCC
ATCCATCCATCCGGCTGTAGTGCCCGCCCCCAAACTCCCGATTTCAATGC
CACCCAGCCGAACCGGACAACTGTGACTCGAATTTAATAAAAACGGGCTA
ATGGGAAACATTTTCTGTAGCTGTCACGCCCCCGGCAACGACGCCCCCTT
ACACTCAAACAAAAGGGAGATTAAAATCAGTCCCCCCCCTGCAATGATGA
ATTTGGGTCGATATATCATTTTTATTAAGATCTGATATGTGTAACTTGCC
ATGGTAATGAAGATATACTATATATGCTGTGTTTCTTTAATTTCGTGAAC
CATTTGAAATCTTTGTTTTTTTTTTTTTAACTGTGCACCTCAAAAATGCC
AACTGTCGCCTATTCGAAATCTCAGCTCAGTTTAACTTGCGGACCCAGCT
GAGCTCAGCGCTAAATATTTTTCAAATATTTAACAGCTTTCCGCGCCGAG
CTTGCCGTTGGCTAATGCATAATTTATATGTACGAAAAAATTTGTCATTA
GGGAAAGCGGCGCTTTTCCGTTTTCCCCTACTAATTGGCCAGGTGGTTCG
CTGGGCTGCATGGGATAAGGATATTTTCGTTAATTAGCTGTGATGTCATG
TTTGAGTTTTGAATCTCCGCCGACGCTCCGCCTTTGCCACGCGATTCCAT
CTGCACTTTGTTTGGGACAAAGGTATGACATAGCCATACAGCTTAAACAC
ATTTCACTTGTTTGTAAAGCCATCCCATCTAACCATCCCGTGCCCCAGAA
TGCCGCACTTTCCACCGCACATGCCCCTGGCCAGCGGACATGTCAGGCTA
GGAGGCTAAAATTAATGAATAGATTATGATTAATGAGCGGCGACATCATT
AAAATATATTTATATATTCAAATTGCGGTTTTGCTGACCGACCCTCGACT
CGACGTCTCGACAGGACCTGGATGGTCGAGGATGAGAGGTTGGGTGGGGA
ATGAATCGAATGAATGCGAATGTCCTCGAACAACATACAGACGCACAAAG
CCGCATAAAATGTTAAATCATTAGTTTAAATTGCCGCAAAAAGTTTGCGA
CGGACGACGGAGCGAACATTTTTGCTTGGCTATTTACAAAATACAAAATA
TGAAAACGTGAATGAGCCACAAAAAAAAAAAAAAAA
RH18724.complete Blast Records
Blast to MB8.fasta performed on 2010-07-15 18:07:18 has no hits.
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:04:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| chr3R | 27901430 | chr3R | 24806449..24809564 | 3120..5 | 15475 | 99.8 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:23:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:03:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28983439..28986567 | 3133..5 | 15600 | 99.9 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:53:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 31820162 | 3R | 28724270..28727398 | 3133..5 | 15600 | 99.9 | Minus |
Blast to na_te.dros performed 2019-03-16 13:03:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6711..6817 | 61..166 | 171 | 68.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6835 | 63..166 | 162 | 67.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6853 | 63..166 | 155 | 67.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6842..6943 | 63..166 | 153 | 67 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1111..1156 | 68..112 | 146 | 82.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2451..2513 | 63..125 | 143 | 73.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6788..6858 | 63..135 | 134 | 70.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6800..6870 | 63..135 | 134 | 70.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2604..2666 | 63..125 | 134 | 71.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2388..2471 | 63..143 | 132 | 68.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1134 | 63..135 | 132 | 69.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6834 | 63..124 | 131 | 72.6 | Plus |
| copia | 5143 | copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). | 122..188 | 132..58 | 131 | 70.7 | Minus |
| copia | 5143 | copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). | 4991..5057 | 132..58 | 131 | 70.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1551..1611 | 63..125 | 130 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2349..2413 | 63..124 | 129 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2396 | 63..143 | 128 | 69.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2799..2838 | 63..101 | 125 | 82.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2423 | 63..143 | 123 | 70 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2814..2856 | 63..104 | 122 | 79.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6899..6941 | 63..104 | 122 | 81.8 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3281..3311 | 59..89 | 119 | 87.1 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7954..7995 | 62..102 | 117 | 78.6 | Plus |
| TART-A | 13424 | TART-A 13424bp | 6066..6202 | 622..486 | 117 | 56.8 | Minus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9398..9439 | 62..102 | 117 | 78.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6824..6886 | 63..125 | 116 | 68.8 | Plus |
RH18724.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:04:38 Download gff for
RH18724.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chr3R | 24806449..24809154 | 415..3120 | 98 | == | Minus |
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 17:30:20 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 17:30:20 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:04:38 Download gff for
RH18724.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28983452..28986569 | 1..3120 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:04:38 Download gff for
RH18724.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28983452..28986569 | 1..3120 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:04:38 Download gff for
RH18724.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28983452..28986569 | 1..3120 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:15:06 Download gff for
RH18724.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24809174..24812291 | 1..3120 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:15:06 Download gff for
RH18724.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24809174..24812291 | 1..3120 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:15:06 Download gff for
RH18724.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24809174..24812291 | 1..3120 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:02:47 Download gff for
RH18724.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28724283..28727400 | 1..3120 | 99 | | Minus |
RH18724.pep Sequence
Translation from 474 to 785
> RH18724.pep
MRYKIQYLSNLYYPMHFLKLILGIQKILVYFLACNSKVFNDFLPVQLQLL
PSPSVSSPLSPFGLCSALSSAVFGFQFATPSPSPTPSVTPLSPTPFPPVP
LYP*
RH18724.pep Blast Records
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:42:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsec\GM12274-PA | 103 | GM12274-PA | 1..103 | 1..103 | 266 | 76.7 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:42:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsim\GD18005-PA | 103 | GD18005-PA | 1..103 | 1..103 | 285 | 77.7 | Plus |
RH18724.hyp Sequence
Translation from 474 to 785
> RH18724.hyp
MRYKIQYLSNLYYPMHFLKLILGIQKILVYFLACNSKVFNDFLPVQLQLL
PSPSVSSPLSPFGLCSALSSAVFGFQFATPSPSPTPSVTPLSPTPFPPVP
LYP*
Sequence RH18724.hyp has no blast hits.
