Clone RH18728 Report

Search the DGRC for RH18728

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:187
Well:28
Vector:pFlc-1
Associated Gene/TranscriptClect27-RA
Protein status:RH18728.pep: gold
Preliminary Size:1256
Sequenced Size:1296

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3244 2002-01-01 Sim4 clustering to Release 2
CG3244 2003-01-01 Sim4 clustering to Release 3
CG3244 2003-01-24 Blastp of sequenced clone
CG3244 2008-04-29 Release 5.5 accounting
CG3244 2008-08-15 Release 5.9 accounting
CG3244 2008-12-18 5.12 accounting

Clone Sequence Records

RH18728.complete Sequence

1296 bp (1296 high quality bases) assembled on 2003-01-24

GenBank Submission: AY070683

> RH18728.complete
GTTTTGTTTTCGTTTGCGTCTGGTCTCGTCTGGTTGTCTGCTTGGACAAT
TCGGCGACTACAGTATAGAAACCGTGCTGTGCAGTGTTATTCCAAATAGC
AAGCAAAGATGAAAGTCACCCTGGCAATAGCGACTTTCTGCGTGGTGATG
GCCTGCAGCCATGCGGCCAGAACCACAACGACAACAGCGACCAAGCCGGG
TCGCTTCCTCTCACTGCCCGTGCCCGCCAAGTGCGCTAGCCGTCCCAAGG
AGTTCTCCTACCGCGGCAAAAACATGTTCCTAACCACCCACGTGCCCGCG
CTGGCCAACAAGAAGGTCGATTGGTTGGATGGTCGCAATCTGTGCCGCGA
GTACTGCATGGATCTGGTCGCCCTGGAGACTCAGGAGAAGAACAATCTGA
TCTTCCGCGTGATCCAGCAGAACGATGTGCCGTACATCTGGACGGCCGGA
CGTATCTGTGACTTTGCTGGCTGCGAGAATCGTCCAGATTTGGAGCCCAA
GACCGTCTATGGATGGTTCTGGTCCGCAACCCGCGAGAAGATCCAGGCCA
CCAACCGCATCCCACAGGGCTGGGGCTACAACCCATGGTCGCAGACTGGC
CACAAGAAGCGCCCGCAGCCGGACAACGCCGAATACGACATCAACCAGAC
CAAGGAGCAGTGCCTGTCCGTGTTGAACAACGTGTACAACGATGGCATCG
CCTGGCACGACGTGGCCTGCTACCACGAGAAGCCCGTCATCTGTGAGGAC
AACGAGGAGCTGCTGCGCTATGTGGCGGCCACGAATCCCGGCATCCGTCT
ATAGAGCGGCTCGCTGGGCGTTCGCTGTTTGCCTAATTTTAAAGCTACTT
ATTATAATATTCCTTAAACGAGTTTTTGTATAATTTTTGTTTGTATGTGT
ACGACGAAAACGGAAGAAAGCAAGACAAATAGACTTTAGAATTTACAATT
TCCGATCCTACAAACACCACAAAACCACCCACCCACCAAATCCACAATAC
TGCTTTCATCACACCTTAGCACCCAGCACTTAGTCTCACTTCTCCTTCCT
CCCTACCTTCGAAACTGCCAATTTTACGCGTAGAATTCTATTCCGTTGTA
AACAGTTGAGTCGTTTTCAGATCGCACCTTAAATATTTATAGGCAATCCT
AAATTGCAAGTGTTTCGCTCTGACCCACTGTCTGTCATTCAAGCAAGAAA
TTCGGAATCTCTTTAGTATTTTGTTTGAGACACTCATGTTTTGTCCACAA
AGAGATTGAATAAAATTTTGTAAAGATCCCAAAAAAAAAAAAAAAA

RH18728.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:22:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG3244-RA 1541 CG3244-RA 112..1403 2..1293 6430 99.8 Plus
CG3244.a 1257 CG3244.a 70..1254 109..1293 5895 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:42:22
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 4795734..4796772 1280..242 5105 99.4 Minus
chr2L 23010047 chr2L 4798875..4799011 243..107 685 100 Minus
chr2L 23010047 chr2L 4800948..4801054 108..2 535 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:23:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:42:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4796587..4797638 1293..242 5230 99.8 Minus
2L 23513712 2L 4799744..4799880 243..107 685 100 Minus
2L 23513712 2L 4801817..4801923 108..2 535 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:01:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4796587..4797638 1293..242 5230 99.8 Minus
2L 23513712 2L 4799744..4799880 243..107 685 100 Minus
2L 23513712 2L 4801817..4801923 108..2 535 100 Minus
Blast to na_te.dros performed on 2019-03-15 16:42:20 has no hits.

RH18728.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:43:01 Download gff for RH18728.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 4795734..4796772 242..1280 99 <- Minus
chr2L 4798877..4799009 109..241 100 <- Minus
chr2L 4800948..4801054 1..108 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:42:49 Download gff for RH18728.complete
Subject Subject Range Query Range Percent Splice Strand
CG3244-RA 1..696 109..804 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:53:12 Download gff for RH18728.complete
Subject Subject Range Query Range Percent Splice Strand
CG3244-RA 1..696 109..804 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:08:25 Download gff for RH18728.complete
Subject Subject Range Query Range Percent Splice Strand
Clect27-RA 1..696 109..804 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:44:20 Download gff for RH18728.complete
Subject Subject Range Query Range Percent Splice Strand
CG3244-RA 1..696 109..804 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:47:12 Download gff for RH18728.complete
Subject Subject Range Query Range Percent Splice Strand
Clect27-RA 1..696 109..804 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:07:31 Download gff for RH18728.complete
Subject Subject Range Query Range Percent Splice Strand
CG3244-RA 1..1279 2..1280 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:53:12 Download gff for RH18728.complete
Subject Subject Range Query Range Percent Splice Strand
CG3244-RA 1..1279 2..1280 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:08:25 Download gff for RH18728.complete
Subject Subject Range Query Range Percent Splice Strand
Clect27-RA 1..1279 2..1280 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:44:20 Download gff for RH18728.complete
Subject Subject Range Query Range Percent Splice Strand
CG3244-RA 1..1279 2..1280 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:47:12 Download gff for RH18728.complete
Subject Subject Range Query Range Percent Splice Strand
Clect27-RA 1..1279 2..1280 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:43:01 Download gff for RH18728.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4799746..4799878 109..241 100 <- Minus
2L 4801817..4801923 1..108 99   Minus
2L 4796600..4797638 242..1280 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:43:01 Download gff for RH18728.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4799746..4799878 109..241 100 <- Minus
2L 4801817..4801923 1..108 99   Minus
2L 4796600..4797638 242..1280 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:43:01 Download gff for RH18728.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4799746..4799878 109..241 100 <- Minus
2L 4801817..4801923 1..108 99   Minus
2L 4796600..4797638 242..1280 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:08:25 Download gff for RH18728.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4796600..4797638 242..1280 100 <- Minus
arm_2L 4799746..4799878 109..241 100 <- Minus
arm_2L 4801817..4801923 1..108 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:15:11 Download gff for RH18728.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4801817..4801923 1..108 99   Minus
2L 4796600..4797638 242..1280 100 <- Minus
2L 4799746..4799878 109..241 100 <- Minus

RH18728.pep Sequence

Translation from 108 to 803

> RH18728.pep
MKVTLAIATFCVVMACSHAARTTTTTATKPGRFLSLPVPAKCASRPKEFS
YRGKNMFLTTHVPALANKKVDWLDGRNLCREYCMDLVALETQEKNNLIFR
VIQQNDVPYIWTAGRICDFAGCENRPDLEPKTVYGWFWSATREKIQATNR
IPQGWGYNPWSQTGHKKRPQPDNAEYDINQTKEQCLSVLNNVYNDGIAWH
DVACYHEKPVICEDNEELLRYVAATNPGIRL*

RH18728.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:53:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14419-PA 231 GF14419-PA 1..231 1..231 1230 97.8 Plus
Dana\GF15862-PA 219 GF15862-PA 21..219 32..231 489 47.6 Plus
Dana\GF17242-PA 220 GF17242-PA 1..220 7..231 484 43.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:53:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24353-PA 231 GG24353-PA 1..231 1..231 1255 100 Plus
Dere\GG10482-PA 219 GG10482-PA 21..219 32..231 501 48.5 Plus
Dere\GG18750-PA 220 GG18750-PA 1..220 7..231 485 43.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:53:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10241-PA 190 GH10241-PA 1..188 1..186 918 93.6 Plus
Dgri\GH22097-PA 220 GH22097-PA 1..220 7..231 492 44.7 Plus
Dgri\GH11170-PA 219 GH11170-PA 11..219 22..231 491 46.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:07:23
Subject Length Description Subject Range Query Range Score Percent Strand
Clect27-PB 231 CG3244-PB 1..231 1..231 1274 100 Plus
Clect27-PA 231 CG3244-PA 1..231 1..231 1274 100 Plus
CG6055-PB 219 CG6055-PB 21..219 32..231 509 48.5 Plus
CG6055-PA 219 CG6055-PA 21..219 32..231 509 48.5 Plus
CG4115-PA 220 CG4115-PA 4..220 10..231 498 44.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:53:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15343-PA 233 GI15343-PA 1..233 1..231 1167 94.4 Plus
Dmoj\GI23788-PA 219 GI23788-PA 11..219 22..231 497 46.3 Plus
Dmoj\GI22702-PA 220 GI22702-PA 1..220 7..231 487 43.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:53:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15967-PA 232 GL15967-PA 1..232 1..231 1220 97.4 Plus
Dper\GL25820-PA 219 GL25820-PA 21..219 32..231 493 48.5 Plus
Dper\GL22277-PA 220 GL22277-PA 1..220 7..231 480 43.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:53:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16905-PA 246 GA16905-PA 15..246 1..231 1223 97.4 Plus
Dpse\GA19326-PA 219 GA19326-PA 21..219 32..231 493 48.5 Plus
Dpse\GA17968-PA 220 GA17968-PA 1..220 7..231 480 43.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:53:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18074-PA 231 GM18074-PA 1..231 1..231 1251 99.6 Plus
Dsec\GM16469-PA 219 GM16469-PA 21..219 32..231 501 48.5 Plus
Dsec\GM24013-PA 220 GM24013-PA 1..220 7..231 490 43.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:53:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23474-PA 219 GD23474-PA 21..219 32..231 500 48.5 Plus
Dsim\GD18814-PA 220 GD18814-PA 1..220 7..231 490 43.8 Plus
Dsim\GD22691-PA 125 GD22691-PA 56..100 1..45 177 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:53:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17272-PA 233 GJ17272-PA 1..233 1..231 1168 94.8 Plus
Dvir\GJ21003-PA 219 GJ21003-PA 11..219 22..231 497 46.3 Plus
Dvir\GJ23431-PA 220 GJ23431-PA 1..220 7..231 490 44.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:53:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23915-PA 233 GK23915-PA 3..233 1..231 1224 97.8 Plus
Dwil\GK24308-PA 219 GK24308-PA 11..219 22..231 499 46.8 Plus
Dwil\GK11972-PA 220 GK11972-PA 1..220 7..231 485 43.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:53:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14680-PA 231 GE14680-PA 1..231 1..231 1255 100 Plus
Dyak\GE14572-PA 219 GE14572-PA 21..219 32..231 499 48.5 Plus
Dyak\GE26172-PA 220 GE26172-PA 1..220 7..231 491 44.2 Plus

RH18728.hyp Sequence

Translation from 108 to 803

> RH18728.hyp
MKVTLAIATFCVVMACSHAARTTTTTATKPGRFLSLPVPAKCASRPKEFS
YRGKNMFLTTHVPALANKKVDWLDGRNLCREYCMDLVALETQEKNNLIFR
VIQQNDVPYIWTAGRICDFAGCENRPDLEPKTVYGWFWSATREKIQATNR
IPQGWGYNPWSQTGHKKRPQPDNAEYDINQTKEQCLSVLNNVYNDGIAWH
DVACYHEKPVICEDNEELLRYVAATNPGIRL*

RH18728.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:01:31
Subject Length Description Subject Range Query Range Score Percent Strand
Clect27-PB 231 CG3244-PB 1..231 1..231 1274 100 Plus
Clect27-PA 231 CG3244-PA 1..231 1..231 1274 100 Plus
CG6055-PB 219 CG6055-PB 21..219 32..231 509 48.5 Plus
CG6055-PA 219 CG6055-PA 21..219 32..231 509 48.5 Plus
CG4115-PA 220 CG4115-PA 4..220 10..231 498 44.4 Plus