BDGP Sequence Production Resources |
Search the DGRC for RH18728
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 187 |
Well: | 28 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Clect27-RA |
Protein status: | RH18728.pep: gold |
Preliminary Size: | 1256 |
Sequenced Size: | 1296 |
Gene | Date | Evidence |
---|---|---|
CG3244 | 2002-01-01 | Sim4 clustering to Release 2 |
CG3244 | 2003-01-01 | Sim4 clustering to Release 3 |
CG3244 | 2003-01-24 | Blastp of sequenced clone |
CG3244 | 2008-04-29 | Release 5.5 accounting |
CG3244 | 2008-08-15 | Release 5.9 accounting |
CG3244 | 2008-12-18 | 5.12 accounting |
1296 bp (1296 high quality bases) assembled on 2003-01-24
GenBank Submission: AY070683
> RH18728.complete GTTTTGTTTTCGTTTGCGTCTGGTCTCGTCTGGTTGTCTGCTTGGACAAT TCGGCGACTACAGTATAGAAACCGTGCTGTGCAGTGTTATTCCAAATAGC AAGCAAAGATGAAAGTCACCCTGGCAATAGCGACTTTCTGCGTGGTGATG GCCTGCAGCCATGCGGCCAGAACCACAACGACAACAGCGACCAAGCCGGG TCGCTTCCTCTCACTGCCCGTGCCCGCCAAGTGCGCTAGCCGTCCCAAGG AGTTCTCCTACCGCGGCAAAAACATGTTCCTAACCACCCACGTGCCCGCG CTGGCCAACAAGAAGGTCGATTGGTTGGATGGTCGCAATCTGTGCCGCGA GTACTGCATGGATCTGGTCGCCCTGGAGACTCAGGAGAAGAACAATCTGA TCTTCCGCGTGATCCAGCAGAACGATGTGCCGTACATCTGGACGGCCGGA CGTATCTGTGACTTTGCTGGCTGCGAGAATCGTCCAGATTTGGAGCCCAA GACCGTCTATGGATGGTTCTGGTCCGCAACCCGCGAGAAGATCCAGGCCA CCAACCGCATCCCACAGGGCTGGGGCTACAACCCATGGTCGCAGACTGGC CACAAGAAGCGCCCGCAGCCGGACAACGCCGAATACGACATCAACCAGAC CAAGGAGCAGTGCCTGTCCGTGTTGAACAACGTGTACAACGATGGCATCG CCTGGCACGACGTGGCCTGCTACCACGAGAAGCCCGTCATCTGTGAGGAC AACGAGGAGCTGCTGCGCTATGTGGCGGCCACGAATCCCGGCATCCGTCT ATAGAGCGGCTCGCTGGGCGTTCGCTGTTTGCCTAATTTTAAAGCTACTT ATTATAATATTCCTTAAACGAGTTTTTGTATAATTTTTGTTTGTATGTGT ACGACGAAAACGGAAGAAAGCAAGACAAATAGACTTTAGAATTTACAATT TCCGATCCTACAAACACCACAAAACCACCCACCCACCAAATCCACAATAC TGCTTTCATCACACCTTAGCACCCAGCACTTAGTCTCACTTCTCCTTCCT CCCTACCTTCGAAACTGCCAATTTTACGCGTAGAATTCTATTCCGTTGTA AACAGTTGAGTCGTTTTCAGATCGCACCTTAAATATTTATAGGCAATCCT AAATTGCAAGTGTTTCGCTCTGACCCACTGTCTGTCATTCAAGCAAGAAA TTCGGAATCTCTTTAGTATTTTGTTTGAGACACTCATGTTTTGTCCACAA AGAGATTGAATAAAATTTTGTAAAGATCCCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 4795734..4796772 | 1280..242 | 5105 | 99.4 | Minus |
chr2L | 23010047 | chr2L | 4798875..4799011 | 243..107 | 685 | 100 | Minus |
chr2L | 23010047 | chr2L | 4800948..4801054 | 108..2 | 535 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 4796587..4797638 | 1293..242 | 5230 | 99.8 | Minus |
2L | 23513712 | 2L | 4799744..4799880 | 243..107 | 685 | 100 | Minus |
2L | 23513712 | 2L | 4801817..4801923 | 108..2 | 535 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 4795734..4796772 | 242..1280 | 99 | <- | Minus |
chr2L | 4798877..4799009 | 109..241 | 100 | <- | Minus |
chr2L | 4800948..4801054 | 1..108 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3244-RA | 1..696 | 109..804 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3244-RA | 1..696 | 109..804 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Clect27-RA | 1..696 | 109..804 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3244-RA | 1..696 | 109..804 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Clect27-RA | 1..696 | 109..804 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3244-RA | 1..1279 | 2..1280 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3244-RA | 1..1279 | 2..1280 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Clect27-RA | 1..1279 | 2..1280 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3244-RA | 1..1279 | 2..1280 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Clect27-RA | 1..1279 | 2..1280 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4799746..4799878 | 109..241 | 100 | <- | Minus |
2L | 4801817..4801923 | 1..108 | 99 | Minus | |
2L | 4796600..4797638 | 242..1280 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4799746..4799878 | 109..241 | 100 | <- | Minus |
2L | 4801817..4801923 | 1..108 | 99 | Minus | |
2L | 4796600..4797638 | 242..1280 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4799746..4799878 | 109..241 | 100 | <- | Minus |
2L | 4801817..4801923 | 1..108 | 99 | Minus | |
2L | 4796600..4797638 | 242..1280 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 4796600..4797638 | 242..1280 | 100 | <- | Minus |
arm_2L | 4799746..4799878 | 109..241 | 100 | <- | Minus |
arm_2L | 4801817..4801923 | 1..108 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4801817..4801923 | 1..108 | 99 | Minus | |
2L | 4796600..4797638 | 242..1280 | 100 | <- | Minus |
2L | 4799746..4799878 | 109..241 | 100 | <- | Minus |
Translation from 108 to 803
> RH18728.pep MKVTLAIATFCVVMACSHAARTTTTTATKPGRFLSLPVPAKCASRPKEFS YRGKNMFLTTHVPALANKKVDWLDGRNLCREYCMDLVALETQEKNNLIFR VIQQNDVPYIWTAGRICDFAGCENRPDLEPKTVYGWFWSATREKIQATNR IPQGWGYNPWSQTGHKKRPQPDNAEYDINQTKEQCLSVLNNVYNDGIAWH DVACYHEKPVICEDNEELLRYVAATNPGIRL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14419-PA | 231 | GF14419-PA | 1..231 | 1..231 | 1230 | 97.8 | Plus |
Dana\GF15862-PA | 219 | GF15862-PA | 21..219 | 32..231 | 489 | 47.6 | Plus |
Dana\GF17242-PA | 220 | GF17242-PA | 1..220 | 7..231 | 484 | 43.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24353-PA | 231 | GG24353-PA | 1..231 | 1..231 | 1255 | 100 | Plus |
Dere\GG10482-PA | 219 | GG10482-PA | 21..219 | 32..231 | 501 | 48.5 | Plus |
Dere\GG18750-PA | 220 | GG18750-PA | 1..220 | 7..231 | 485 | 43.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10241-PA | 190 | GH10241-PA | 1..188 | 1..186 | 918 | 93.6 | Plus |
Dgri\GH22097-PA | 220 | GH22097-PA | 1..220 | 7..231 | 492 | 44.7 | Plus |
Dgri\GH11170-PA | 219 | GH11170-PA | 11..219 | 22..231 | 491 | 46.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Clect27-PB | 231 | CG3244-PB | 1..231 | 1..231 | 1274 | 100 | Plus |
Clect27-PA | 231 | CG3244-PA | 1..231 | 1..231 | 1274 | 100 | Plus |
CG6055-PB | 219 | CG6055-PB | 21..219 | 32..231 | 509 | 48.5 | Plus |
CG6055-PA | 219 | CG6055-PA | 21..219 | 32..231 | 509 | 48.5 | Plus |
CG4115-PA | 220 | CG4115-PA | 4..220 | 10..231 | 498 | 44.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15343-PA | 233 | GI15343-PA | 1..233 | 1..231 | 1167 | 94.4 | Plus |
Dmoj\GI23788-PA | 219 | GI23788-PA | 11..219 | 22..231 | 497 | 46.3 | Plus |
Dmoj\GI22702-PA | 220 | GI22702-PA | 1..220 | 7..231 | 487 | 43.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15967-PA | 232 | GL15967-PA | 1..232 | 1..231 | 1220 | 97.4 | Plus |
Dper\GL25820-PA | 219 | GL25820-PA | 21..219 | 32..231 | 493 | 48.5 | Plus |
Dper\GL22277-PA | 220 | GL22277-PA | 1..220 | 7..231 | 480 | 43.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA16905-PA | 246 | GA16905-PA | 15..246 | 1..231 | 1223 | 97.4 | Plus |
Dpse\GA19326-PA | 219 | GA19326-PA | 21..219 | 32..231 | 493 | 48.5 | Plus |
Dpse\GA17968-PA | 220 | GA17968-PA | 1..220 | 7..231 | 480 | 43.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18074-PA | 231 | GM18074-PA | 1..231 | 1..231 | 1251 | 99.6 | Plus |
Dsec\GM16469-PA | 219 | GM16469-PA | 21..219 | 32..231 | 501 | 48.5 | Plus |
Dsec\GM24013-PA | 220 | GM24013-PA | 1..220 | 7..231 | 490 | 43.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23474-PA | 219 | GD23474-PA | 21..219 | 32..231 | 500 | 48.5 | Plus |
Dsim\GD18814-PA | 220 | GD18814-PA | 1..220 | 7..231 | 490 | 43.8 | Plus |
Dsim\GD22691-PA | 125 | GD22691-PA | 56..100 | 1..45 | 177 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17272-PA | 233 | GJ17272-PA | 1..233 | 1..231 | 1168 | 94.8 | Plus |
Dvir\GJ21003-PA | 219 | GJ21003-PA | 11..219 | 22..231 | 497 | 46.3 | Plus |
Dvir\GJ23431-PA | 220 | GJ23431-PA | 1..220 | 7..231 | 490 | 44.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK23915-PA | 233 | GK23915-PA | 3..233 | 1..231 | 1224 | 97.8 | Plus |
Dwil\GK24308-PA | 219 | GK24308-PA | 11..219 | 22..231 | 499 | 46.8 | Plus |
Dwil\GK11972-PA | 220 | GK11972-PA | 1..220 | 7..231 | 485 | 43.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE14680-PA | 231 | GE14680-PA | 1..231 | 1..231 | 1255 | 100 | Plus |
Dyak\GE14572-PA | 219 | GE14572-PA | 21..219 | 32..231 | 499 | 48.5 | Plus |
Dyak\GE26172-PA | 220 | GE26172-PA | 1..220 | 7..231 | 491 | 44.2 | Plus |
Translation from 108 to 803
> RH18728.hyp MKVTLAIATFCVVMACSHAARTTTTTATKPGRFLSLPVPAKCASRPKEFS YRGKNMFLTTHVPALANKKVDWLDGRNLCREYCMDLVALETQEKNNLIFR VIQQNDVPYIWTAGRICDFAGCENRPDLEPKTVYGWFWSATREKIQATNR IPQGWGYNPWSQTGHKKRPQPDNAEYDINQTKEQCLSVLNNVYNDGIAWH DVACYHEKPVICEDNEELLRYVAATNPGIRL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Clect27-PB | 231 | CG3244-PB | 1..231 | 1..231 | 1274 | 100 | Plus |
Clect27-PA | 231 | CG3244-PA | 1..231 | 1..231 | 1274 | 100 | Plus |
CG6055-PB | 219 | CG6055-PB | 21..219 | 32..231 | 509 | 48.5 | Plus |
CG6055-PA | 219 | CG6055-PA | 21..219 | 32..231 | 509 | 48.5 | Plus |
CG4115-PA | 220 | CG4115-PA | 4..220 | 10..231 | 498 | 44.4 | Plus |