Clone RH19795 Report

Search the DGRC for RH19795

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:197
Well:95
Vector:pFlc-1
Associated Gene/TranscriptCG7829-RA
Protein status:RH19795.pep: gold
Preliminary Size:779
Sequenced Size:993

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7829 2002-01-01 Sim4 clustering to Release 2
CG7829 2002-04-22 Blastp of sequenced clone
CG7829 2003-01-01 Sim4 clustering to Release 3
CG7829 2008-04-29 Release 5.5 accounting
CG7829 2008-08-15 Release 5.9 accounting
CG7829 2008-12-18 5.12 accounting

Clone Sequence Records

RH19795.complete Sequence

993 bp (993 high quality bases) assembled on 2002-04-22

GenBank Submission: AY113573

> RH19795.complete
GCTACTTTAAAGCGATTCTTTCTCCGTTTAACTGCGAATGATGTACAAGT
TATGGTGGAAATTGCTTCTCCTCCAGGCTTCTGGGTGTCTATCTCTGGAG
AGTCGCCCAGATCCACGCATAGTCGGTGGCTTCCCAGCCGATATCGCCAA
CATTCCGTACATAGTGTCCATCCAACTGTACGGCATCCACCATTGTGGCG
GCTCCATAATAAATAACCACACCATCCTAACGGCTGGCCATTGTCTGAAC
GGAGTGCCACATCGCCTGCTAAAAGTTAAGGTCGGCGGAACGTCGCGCTA
CCGAAAAGATGGGGAACTGTTCTCGGTCGCTGACCTGCAAGTCCACGAGA
ATTTCAATCCCAAGACCATGGACTATGACATCGGTATCATCAGGTTGACC
AAAAACCTAACACTATCTAGAAAGGTAAAGGCCATTCCCATAAACCCAGA
GAGAGTAGCCGAAGGCACCTATGCCACCATTGCCGGCTGGGGATTTAAGT
CCATGAATGGTCCTCCCTCGGACAGTCTGAGATATGCCCGAGTGCCGATC
GTGAATCAGACCGCCTGCAGGAACCTACTGGGCAAAACTGTGACGGATCG
GATGCTCTGTGCAGGCTACCTCAAGGGCGGCACGGATGCCTGCCAGATGG
ACTCCGGTGGACCCTTGTCGGTGAGGGAGCAGCTGGTGGGCATCGTGTCG
TGGGGAGTGGGGTGCGCCCTGGCGGACAAGCCGGGAGTCTACTCCCGCCT
CGATGCACTGCATCCCTGGCTAGACCAGGTCTTGAATAAGTCAAAGTAAT
GCAACATACTTGATTCGGGCAGTTTCACTATTTTAGCAGTTGGCACCCAT
GAAAGACGCATAAAAACGTGCACGTAAATGCTTTCTCGCTTAAAGTGAAA
AAATCTACGCGGATTTAATCGTACAAAATAATAAAAACTTTAAGGTTCAT
TAAAAGCCAACTATTTGTGAATAAAAGAAAAAAAAAAAAAAAA

RH19795.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:13:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG7829-RA 1026 CG7829-RA 41..1019 2..980 4880 99.8 Plus
CG7829-RB 644 CG7829-RB 1..425 2..426 2110 99.7 Plus
CG7829-RB 644 CG7829-RB 473..644 423..594 860 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:13:57
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 25639293..25639847 977..423 2730 99.5 Minus
chr3R 27901430 chr3R 25639895..25640319 426..2 2095 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:24:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:13:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29816735..29817292 980..423 2790 100 Minus
3R 32079331 3R 29817340..29817764 426..2 2110 99.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:43:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 29557566..29558123 980..423 2790 100 Minus
3R 31820162 3R 29558171..29558595 426..2 2110 99.7 Minus
Blast to na_te.dros performed on 2019-03-16 07:13:56 has no hits.

RH19795.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:14:56 Download gff for RH19795.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 25639293..25639845 425..977 99 <- Minus
chr3R 25639897..25640319 1..424 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:43:00 Download gff for RH19795.complete
Subject Subject Range Query Range Percent Splice Strand
CG7829-RA 1..762 38..799 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:58:55 Download gff for RH19795.complete
Subject Subject Range Query Range Percent Splice Strand
CG7829-RA 1..762 38..799 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:43:48 Download gff for RH19795.complete
Subject Subject Range Query Range Percent Splice Strand
CG7829-RA 1..762 38..799 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:52:12 Download gff for RH19795.complete
Subject Subject Range Query Range Percent Splice Strand
CG7829-RA 1..762 38..799 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:28:04 Download gff for RH19795.complete
Subject Subject Range Query Range Percent Splice Strand
CG7829-RA 1..762 38..799 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:39:27 Download gff for RH19795.complete
Subject Subject Range Query Range Percent Splice Strand
CG7829-RA 1..976 2..977 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:58:55 Download gff for RH19795.complete
Subject Subject Range Query Range Percent Splice Strand
CG7829-RA 1..976 2..977 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:43:48 Download gff for RH19795.complete
Subject Subject Range Query Range Percent Splice Strand
CG7829-RA 1..976 2..977 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:52:12 Download gff for RH19795.complete
Subject Subject Range Query Range Percent Splice Strand
CG7829-RA 1..976 2..977 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:28:04 Download gff for RH19795.complete
Subject Subject Range Query Range Percent Splice Strand
CG7829-RA 1..976 2..977 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:14:56 Download gff for RH19795.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29816738..29817290 425..977 100 <- Minus
3R 29817342..29817764 1..424 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:14:56 Download gff for RH19795.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29816738..29817290 425..977 100 <- Minus
3R 29817342..29817764 1..424 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:14:56 Download gff for RH19795.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29816738..29817290 425..977 100 <- Minus
3R 29817342..29817764 1..424 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:43:48 Download gff for RH19795.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25642460..25643012 425..977 100 <- Minus
arm_3R 25643064..25643486 1..424 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:24:17 Download gff for RH19795.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29557569..29558121 425..977 100 <- Minus
3R 29558173..29558595 1..424 99   Minus

RH19795.pep Sequence

Translation from 37 to 798

> RH19795.pep
MMYKLWWKLLLLQASGCLSLESRPDPRIVGGFPADIANIPYIVSIQLYGI
HHCGGSIINNHTILTAGHCLNGVPHRLLKVKVGGTSRYRKDGELFSVADL
QVHENFNPKTMDYDIGIIRLTKNLTLSRKVKAIPINPERVAEGTYATIAG
WGFKSMNGPPSDSLRYARVPIVNQTACRNLLGKTVTDRMLCAGYLKGGTD
ACQMDSGGPLSVREQLVGIVSWGVGCALADKPGVYSRLDALHPWLDQVLN
KSK*

RH19795.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:29:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16324-PA 250 GF16324-PA 1..249 2..250 897 67.1 Plus
Dana\GF12407-PA 313 GF12407-PA 46..308 2..252 458 39.8 Plus
Dana\GF14668-PA 279 GF14668-PA 48..275 23..247 437 41.7 Plus
Dana\GF11402-PA 257 GF11402-PA 6..256 4..250 433 37.1 Plus
Dana\GF13692-PA 261 GF13692-PA 34..256 27..247 429 42 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:29:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11998-PA 252 GG11998-PA 1..252 1..252 1199 88.1 Plus
Dere\GG22665-PA 263 GG22665-PA 5..257 10..249 469 39.5 Plus
Dere\GG24433-PA 277 GG24433-PA 43..273 20..247 429 40.8 Plus
Dere\epsilonTry-PA 256 GG22660-PA 28..255 25..251 424 39.4 Plus
Dere\GG25325-PA 269 GG25325-PA 39..266 23..248 424 40.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:29:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22924-PA 256 GH22924-PA 28..249 25..245 440 41.3 Plus
Dgri\GH13258-PA 254 GH13258-PA 24..251 23..248 439 41.6 Plus
Dgri\GH22923-PA 266 GH22923-PA 28..250 24..245 439 40.4 Plus
Dgri\GH22926-PA 256 GH22926-PA 1..249 2..245 432 39.5 Plus
Dgri\GH22925-PA 254 GH22925-PA 28..254 25..253 425 41.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:25:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG7829-PA 253 CG7829-PA 1..253 1..253 1349 100 Plus
kappaTry-PC 263 CG12388-PC 7..257 9..249 464 39.4 Plus
zetaTry-PA 280 CG12387-PA 29..277 18..249 435 41.4 Plus
Try29F-PD 267 CG9564-PD 23..264 9..248 434 41.5 Plus
Try29F-PC 267 CG9564-PC 23..264 9..248 434 41.5 Plus
CG31954-PA 277 CG31954-PA 43..273 20..247 423 41.2 Plus
gammaTry-PA 253 CG30028-PA 5..249 9..245 422 39.5 Plus
CG30025-PA 253 CG30025-PA 5..249 9..245 422 39.5 Plus
deltaTry-PA 253 CG12351-PA 5..249 9..245 422 39.5 Plus
CG30031-PA 253 CG30031-PA 5..249 9..245 422 39.5 Plus
epsilonTry-PA 256 CG18681-PA 28..251 25..247 416 40.1 Plus
alphaTry-PA 256 CG18444-PA 28..254 25..250 415 40 Plus
betaTry-PB 253 CG18211-PB 5..249 9..245 414 38.7 Plus
betaTry-PA 253 CG18211-PA 5..249 9..245 414 38.7 Plus
CG18735-PA 364 CG18735-PA 82..311 27..245 403 37.4 Plus
CG34458-PA 257 CG34458-PA 29..256 25..250 402 36 Plus
Ser8-PA 260 CG4812-PA 34..255 27..247 402 40.4 Plus
CG17571-PB 258 CG17571-PB 27..251 24..245 392 39.6 Plus
CG17571-PA 258 CG17571-PA 27..251 24..245 392 39.6 Plus
iotaTry-PA 252 CG7754-PA 27..250 27..250 391 39.9 Plus
etaTry-PA 262 CG12386-PA 9..254 9..245 389 37.8 Plus
CG8299-PA 260 CG8299-PA 7..254 9..247 385 38.3 Plus
thetaTry-PA 262 CG12385-PA 34..260 27..253 383 41.3 Plus
CG4386-PA 372 CG4386-PA 114..361 15..252 383 33.1 Plus
lambdaTry-PA 272 CG12350-PA 33..256 25..245 378 37.1 Plus
CG9294-PB 352 CG9294-PB 100..334 27..245 375 36.3 Plus
CG11192-PB 279 CG11192-PB 7..264 5..250 370 34.4 Plus
CG6041-PA 308 CG6041-PA 1..271 2..247 366 35.7 Plus
CG13430-PB 267 CG13430-PB 12..265 5..251 365 37 Plus
CG13430-PA 267 CG13430-PA 12..265 5..251 365 37 Plus
Sb-PB 787 CG4316-PB 538..782 22..245 364 35.1 Plus
Sb-PA 787 CG4316-PA 538..782 22..245 364 35.1 Plus
Np-PB 1041 CG34350-PB 794..1039 24..249 361 31 Plus
Np-PA 1041 CG34350-PA 794..1039 24..249 361 31 Plus
CG32271-PA 248 CG32271-PA 1..246 2..249 358 33.5 Plus
CG17239-PB 248 CG17239-PB 23..237 27..245 354 37.4 Plus
CG17239-PA 248 CG17239-PA 23..237 27..245 354 37.4 Plus
CG9372-PA 408 CG9372-PA 163..402 16..245 354 32.9 Plus
CG4613-PC 374 CG4613-PC 136..362 27..245 349 37 Plus
CG4613-PB 374 CG4613-PB 136..362 27..245 349 37 Plus
CG11836-PI 281 CG11836-PI 39..277 22..252 347 35.4 Plus
CG11836-PJ 333 CG11836-PJ 91..329 22..252 347 35.4 Plus
CG3650-PA 249 CG3650-PA 1..249 5..251 346 33.6 Plus
CG6865-PB 285 CG6865-PB 32..285 25..253 345 34.3 Plus
CG8172-PE 545 CG8172-PE 289..540 16..249 344 31.1 Plus
CG8172-PF 561 CG8172-PF 305..556 16..249 344 31.1 Plus
CG8172-PD 371 CG8172-PD 125..366 27..249 340 31.3 Plus
CG32269-PB 332 CG32269-PB 103..329 22..249 334 36.4 Plus
CG32269-PA 332 CG32269-PA 103..329 22..249 334 36.4 Plus
CG32755-PA 315 CG32755-PA 36..271 26..245 333 36.4 Plus
CG9676-PA 251 CG9676-PA 1..245 2..245 325 32.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:29:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21249-PA 273 GI21249-PA 17..271 9..253 474 43.1 Plus
Dmoj\GI23804-PA 269 GI23804-PA 33..263 23..245 454 42.9 Plus
Dmoj\GI17455-PA 260 GI17455-PA 30..254 23..245 448 42.7 Plus
Dmoj\GI21243-PA 255 GI21243-PA 28..254 25..251 430 39.1 Plus
Dmoj\GI21148-PA 256 GI21148-PA 30..255 27..250 415 38.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:29:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13444-PA 259 GL13444-PA 1..253 2..251 840 61.3 Plus
Dper\GL26238-PA 259 GL26238-PA 29..256 23..248 440 43.1 Plus
Dper\GL19474-PA 274 GL19474-PA 38..270 18..247 427 40.9 Plus
Dper\GL17144-PA 252 GL17144-PA 26..250 27..250 413 39.9 Plus
Dper\GL17339-PA 256 GL17339-PA 5..255 9..251 413 39.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:29:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20613-PA 259 GA20613-PA 1..253 2..251 838 61.7 Plus
Dpse\GA24219-PA 273 GA24219-PA 31..270 23..252 447 41.1 Plus
Dpse\GA21879-PA 259 GA21879-PA 29..256 23..248 443 43.1 Plus
Dpse\GA16585-PA 274 GA16585-PA 38..270 18..247 427 40.9 Plus
Dpse\GA14937-PA 256 GA14937-PA 5..255 9..251 413 39.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:29:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12217-PA 294 GM12217-PA 55..294 14..253 1243 96.7 Plus
Dsec\GM20444-PA 263 GM20444-PA 7..261 9..253 455 38.7 Plus
Dsec\GM17347-PA 258 GM17347-PA 10..255 5..248 432 41.2 Plus
Dsec\GM18144-PA 277 GM18144-PA 43..273 20..247 430 41.2 Plus
Dsec\GM20443-PA 280 GM20443-PA 29..277 18..249 413 40.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:29:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17644-PA 211 GD17644-PA 1..209 1..209 1088 96.7 Plus
Dsim\GD22751-PA 277 GD22751-PA 43..273 20..247 431 41.2 Plus
Dsim\GD25911-PA 262 GD25911-PA 7..256 9..249 420 37.1 Plus
Dsim\GD25910-PA 280 GD25910-PA 29..277 18..249 420 41 Plus
Dsim\GD15412-PA 260 GD15412-PA 34..255 27..247 409 40.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:29:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20853-PA 266 GJ20853-PA 10..263 9..252 442 39.4 Plus
Dvir\GJ14373-PA 263 GJ14373-PA 12..260 10..248 436 40.2 Plus
Dvir\GJ17600-PA 276 GJ17600-PA 41..272 19..247 428 41.3 Plus
Dvir\GJ21494-PA 265 GJ21494-PA 27..249 24..245 420 40 Plus
Dvir\GJ20753-PA 258 GJ20753-PA 25..258 22..253 418 38.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22079-PA 257 GK22079-PA 24..251 25..251 807 64.6 Plus
Dwil\GK19333-PA 263 GK19333-PA 20..257 22..249 454 42.7 Plus
Dwil\GK14673-PA 280 GK14673-PA 44..276 18..247 423 40 Plus
Dwil\GK19007-PA 261 GK19007-PA 33..254 25..245 420 42.5 Plus
Dwil\GK21994-PA 256 GK21994-PA 28..255 25..251 420 39 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10423-PA 253 GE10423-PA 1..253 2..252 1213 89.7 Plus
Dyak\kappaTry-PA 263 GE13020-PA 1..257 5..249 469 39.9 Plus
Dyak\GE14855-PA 277 GE14855-PA 43..273 20..247 429 40.3 Plus
Dyak\GE13538-PA 280 GE13538-PA 29..277 18..249 427 42.2 Plus
Dyak\GE12542-PA 259 GE12542-PA 3..252 1..245 426 38.7 Plus

RH19795.hyp Sequence

Translation from 37 to 798

> RH19795.hyp
MMYKLWWKLLLLQASGCLSLESRPDPRIVGGFPADIANIPYIVSIQLYGI
HHCGGSIINNHTILTAGHCLNGVPHRLLKVKVGGTSRYRKDGELFSVADL
QVHENFNPKTMDYDIGIIRLTKNLTLSRKVKAIPINPERVAEGTYATIAG
WGFKSMNGPPSDSLRYARVPIVNQTACRNLLGKTVTDRMLCAGYLKGGTD
ACQMDSGGPLSVREQLVGIVSWGVGCALADKPGVYSRLDALHPWLDQVLN
KSK*

RH19795.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:23:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG7829-PA 253 CG7829-PA 1..253 1..253 1349 100 Plus
kappaTry-PC 263 CG12388-PC 7..257 9..249 464 39.4 Plus
zetaTry-PA 280 CG12387-PA 29..277 18..249 435 41.4 Plus
Try29F-PD 267 CG9564-PD 23..264 9..248 434 41.5 Plus
Try29F-PC 267 CG9564-PC 23..264 9..248 434 41.5 Plus