Clone RH21749 Report

Search the DGRC for RH21749

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:217
Well:49
Vector:pFlc-1
Associated Gene/TranscriptPa1-RA
Protein status:RH21749.pep: gold
Preliminary Size:446
Sequenced Size:1643

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11750 2001-12-13 Blastp of sequenced clone
CG11750 2002-01-01 Sim4 clustering to Release 2
CG11750 2003-01-01 Sim4 clustering to Release 3
CG11750 2008-04-29 Release 5.5 accounting
CG11750 2008-08-15 Release 5.9 accounting
CG11750 2008-12-18 5.12 accounting

Clone Sequence Records

RH21749.complete Sequence

1643 bp (1643 high quality bases) assembled on 2001-12-13

GenBank Submission: AY070686

> RH21749.complete
ACGTTCCAGAAAGGTCGCGAAACCAATAGGTTCTATTGTGGAAAGAAACG
CAAATTTCCAGTTCATTTGGATTGTTTAAATCCGAGAAAACGATGGCAAC
GGATGTGGAGCCGGCGGCGAATACGGCGGACAAGTTCTCCGCCAACGCGG
AGGAGCTAGAGGGCTACTATCTGATGCTGGAGGCGGGAAATATTCCGGAA
CTGCAATGGCAATTTCCGGGACGCAGGGCTCCATCGCCGGAGGCGGGATC
TGGCGGCAATAGCAAGGAACTCGAACAGGCCACCGACGCCATTGAGCAGG
AACCGCAGAAGGCCAACGACTTTGATTTCAGCGACGATGTGGCCCCCACC
CAGATGCGCGTCCGCAGCCAGACGTCCACGCCCAAGTCGGCCAAAAAGAA
GACGGCCAACTTCGCCGGCGTCATGGAGACGCTGAAGAAGAAGAATGCCG
AGAGCTCATAGCACCCGCCGAAATTCTGATGCTGATCCGGTCCAGGCAAT
CGGCTGCAGATCGTACTCTATCGCCATGCGGACTAGTCTATAAGCATCAG
TCGTTTTACAACCATCGACAGGATGGGCTGTGGAGCTCTGCTGCAAATCG
CATTAATGTAAGGATTTAGAGAGAGTTTGAACTTCAATTTACTTAAGATT
TAAATTACCATACTTATAGTTAGCATTTAGAGAGTTTGAAGTTTGAACAT
CAAAACATAAGCTTATTATGACTTATTAGTCAGCATCTAGAGAGGAAGTT
TAAACATCAAAACATAGGCATATTATGACTTAATTACCATATTCATGTGA
CTAGCTTGTAGCTTAAATTGCAGCAGTCTTTGGAATTCTAAAAAACTTTG
TGAACCAACAAGTTGCAACTCAGAGAAGTTTGAACTTCAATTACCATATA
TGCATAACTAGCTGTTAAGGATGTTAACTCCCATTGCATTGGTCAGTTCT
TCATTTTAGACTAAGAACTTGTAATTGAGAAGATAGCATAGAACTAATCA
ACTTATGTTTAAGCAGAGGGATGTGTATGTGATCCTTAATTAGCACGTGG
GAAATTTACGTTCTAAATGTTAATTGTCTTTATTTGATATATTATGACAA
TATTCTTGATAGTATTGTCCAAACCGACGTTTGAAGACTAGAATATAGAA
TATAGGATAGAACGGATGTAAATTTAAATCCAATGCGAGTAAAGCAGATA
ACAAGATAGGCAACTGTAGATCAGTCAACTTCTGTACATAAAAGAACTGA
ATTTCACTAATAGCTGTTAAAACTAGAATATAGAATGTAGGATAGAACGG
ATGTACATTTAAATACAAGATGAGTAAGATAACTGTTTAGTAAGGCAACT
GTAGATCAGTCAACTTCCGTACATACAACTAATACGAAATGAATCAGCAC
AGTTGCCCTACTAAACAATATCAACTTCTCATGAGCTAAAAATAGACTAC
TAAGAATTATGATAAGCCAAGGTTGTTCCGGAAAACGTAACTCCATCCCT
TTCGTTTTCGTAGAAAAACCTTCTATATATAATGACATCATTATATGATG
TTATGTGTAGATTAGAATTCCCATATGCTGCTAACCTAATGGTTCGCAGT
TAATAAAAGTTAGCATTTAAACACGTGAAAAAAAAAAAAAAAA

RH21749.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:48:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG11750-RA 1690 CG11750-RA 28..1658 4..1633 8055 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:52:12
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 11250768..11252091 302..1626 6260 98.5 Plus
chrX 22417052 chrX 11250404..11250701 4..301 1445 99 Plus
chrX 22417052 chrX 11251737..11251840 1137..1240 295 85.6 Plus
chrX 22417052 chrX 11251602..11251705 1272..1375 250 82.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:24:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:52:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11359604..11360936 302..1633 6555 99.6 Plus
X 23542271 X 11359240..11359537 4..301 1490 100 Plus
X 23542271 X 11360575..11360678 1137..1240 280 84.6 Plus
X 23542271 X 11360440..11360543 1272..1375 250 82.7 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:14:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 11367702..11369034 302..1633 6565 99.6 Plus
X 23527363 X 11367338..11367635 4..301 1490 100 Plus
Blast to na_te.dros performed 2019-03-16 19:52:11
Subject Length Description Subject Range Query Range Score Percent Strand
297 6995 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). 2515..2615 1125..1018 118 61.1 Minus

RH21749.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:53:13 Download gff for RH21749.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 11250401..11250701 1..301 98 -> Plus
chrX 11250768..11252091 302..1627 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:43:12 Download gff for RH21749.complete
Subject Subject Range Query Range Percent Splice Strand
CG11750-RA 1..369 93..461 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:16:38 Download gff for RH21749.complete
Subject Subject Range Query Range Percent Splice Strand
CG11750-RA 1..369 93..461 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:35:23 Download gff for RH21749.complete
Subject Subject Range Query Range Percent Splice Strand
Pa1-RA 1..369 93..461 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:42:46 Download gff for RH21749.complete
Subject Subject Range Query Range Percent Splice Strand
CG11750-RA 1..369 93..461 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:44:43 Download gff for RH21749.complete
Subject Subject Range Query Range Percent Splice Strand
Pa1-RA 1..369 93..461 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:49:02 Download gff for RH21749.complete
Subject Subject Range Query Range Percent Splice Strand
CG11750-RA 2..1627 2..1627 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:16:38 Download gff for RH21749.complete
Subject Subject Range Query Range Percent Splice Strand
CG11750-RA 2..1627 2..1626 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:35:23 Download gff for RH21749.complete
Subject Subject Range Query Range Percent Splice Strand
Pa1-RA 2..1628 1..1626 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:42:46 Download gff for RH21749.complete
Subject Subject Range Query Range Percent Splice Strand
CG11750-RA 2..1627 2..1627 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:44:43 Download gff for RH21749.complete
Subject Subject Range Query Range Percent Splice Strand
Pa1-RA 2..1628 1..1626 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:53:13 Download gff for RH21749.complete
Subject Subject Range Query Range Percent Splice Strand
X 11359237..11359537 1..301 99 -> Plus
X 11359604..11360929 302..1627 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:53:13 Download gff for RH21749.complete
Subject Subject Range Query Range Percent Splice Strand
X 11359237..11359537 1..301 99 -> Plus
X 11359604..11360929 302..1627 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:53:13 Download gff for RH21749.complete
Subject Subject Range Query Range Percent Splice Strand
X 11359237..11359537 1..301 99 -> Plus
X 11359604..11360929 302..1627 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:35:23 Download gff for RH21749.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11253270..11253570 1..301 99 -> Plus
arm_X 11253637..11254962 302..1627 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:18:50 Download gff for RH21749.complete
Subject Subject Range Query Range Percent Splice Strand
X 11367335..11367635 1..301 99 -> Plus
X 11367702..11369027 302..1627 99   Plus

RH21749.hyp Sequence

Translation from 92 to 460

> RH21749.hyp
MATDVEPAANTADKFSANAEELEGYYLMLEAGNIPELQWQFPGRRAPSPE
AGSGGNSKELEQATDAIEQEPQKANDFDFSDDVAPTQMRVRSQTSTPKSA
KKKTANFAGVMETLKKKNAESS*

RH21749.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:43:34
Subject Length Description Subject Range Query Range Score Percent Strand
Pa1-PA 122 CG11750-PA 1..122 1..122 623 100 Plus

RH21749.pep Sequence

Translation from 92 to 460

> RH21749.pep
MATDVEPAANTADKFSANAEELEGYYLMLEAGNIPELQWQFPGRRAPSPE
AGSGGNSKELEQATDAIEQEPQKANDFDFSDDVAPTQMRVRSQTSTPKSA
KKKTANFAGVMETLKKKNAESS*

RH21749.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:33:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21770-PA 127 GF21770-PA 1..127 1..122 509 83.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:33:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18409-PA 122 GG18409-PA 1..122 1..122 624 97.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:33:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12182-PA 121 GH12182-PA 1..121 1..122 512 81.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:27
Subject Length Description Subject Range Query Range Score Percent Strand
Pa1-PA 122 CG11750-PA 1..122 1..122 623 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:33:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15712-PA 121 GI15712-PA 1..121 1..122 508 82 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:33:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14852-PA 121 GL14852-PA 1..121 1..122 575 91.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:33:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11173-PA 121 GA11173-PA 1..121 1..122 575 91.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:33:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11475-PA 122 GM11475-PA 1..122 1..122 632 99.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:33:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17018-PA 122 GD17018-PA 1..122 1..122 635 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:33:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15241-PA 121 GJ15241-PA 1..121 1..122 520 82 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:33:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25333-PA 122 GK25333-PA 1..122 1..122 527 86.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:33:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15928-PA 122 GE15928-PA 1..122 1..122 626 98.4 Plus