BDGP Sequence Production Resources |
Search the DGRC for RH22295
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 222 |
Well: | 95 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG12163-RC |
Protein status: | RH22295.pep: gold |
Sequenced Size: | 1313 |
Gene | Date | Evidence |
---|---|---|
CG12163 | 2010-01-23 | Manual selection by Sue Celniker |
1313 bp assembled on 2012-12-12
GenBank Submission: BT122037.1
> RH22295.complete GATTGTGAAACGAGCGCACCGAAAGTCGGCGAGTTTTCTGGCGGATATTT AGGAGGCCCCCACCGCAGCCACTCACACACGCAAACATGAGGCTGTTTGC GGCAGCAACAGTTGCGCTTGTATTGCTTCTGGGCCAAGCAGCTGGCGAGG AGCTTGCGGAGGAGCGAGCGGGACAGGCACAGGGCGATGCGGAGAGCACG GAATCTTCAGAAACAACAACGGACCAGGCGGTGAGTGAGCCCCCGATCAC GCTGGTCCACGTTCTGAATCCCGGCGAGCGGGAGTATTTGTCACCCAACC TGATTGGTGTCCAGAACATTGCGATGACCTTCCTGCCACTGTCGATGAAC TTTGTGAATATCATCGACGCCTTTCGGGAAATCACCGCCGGAGTGCGCTA TGAGATCCTGCTAAACGCGCTAGACACAAAGGCAATACAGCCGGCGGAAG CGGACATAGTCTGCCGCCTGGTCATCCTGGAAAAGCCTTGGCTGCGCACC CAGTGGGGCGACAAGCACCGCGAACTGGTTACCTCCAATTGCACCGACCC AGCGGTGAACTCGGTGGCCGGAGATCCGGCAGAGAAGGCGCGACTGCTTA ACGAGAAATATGTGAGTAATAGCATCTTTAATGGCGGTCAGAGGAAAGAA CTGAGCGACGCAGAGATGGCCAATCTGGAGTCACAGATACTCACTAACCT GGGACCTATGAGGCGGAAGGTCAGTCTGACCAAAACCGCTTCAGCGGCTC CTGTTCGTGCACCTTCTCCTGCTGCTCCTTCTCCTGCCGAGGCTGCCCCT CTGGATTCGGCAGCTCCTGCTGTATTAACCGCATCTATAGCAGTCACCAA GCTTAGTCCACCTGACGCCACTAATGAGACGGCCACGGCAATTAGCATTG ATAATGTGGAAGAAAAGGCAGAAGAGGTGGAGGACAAGCACGAAGAGGAG GTCGTAGCCACCACCACAATCGCCACGGAGCTGAACGAAAATGAGAAGCG TTGGCTCGACGATTTCCTATCGGTGGGTGCGTATGACTTCGAGAAGAGTC AGGAGAAGGGGCAGCAACAGGAGGAGGCCGGCCGGGAGCAGAAGGATCCC GAGGTGGAGGCTACTACCATACCGACAGCATTATCATGAATATTCTCATT ATCATCCCAGACACACACACACACACTCACACACACAGCCAGCCCCATCG TTCAGGGTCTCTGTCTTTCTCATATAAATACTCAGACCACTCATTATACA TACTCACCCTAATGCGAACAATAAAAAAGGAAAATGTTATTTAATTGAAA AAAAAAAAAAAAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 1068816..1069918 | 195..1297 | 97 | <- | Minus |
chr3R | 1077088..1077280 | 1..194 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12163-RA | 1..527 | 87..613 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12163-RC | 1..1053 | 87..1139 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12163-RC | 1..1053 | 87..1139 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12163-RC | 1..1053 | 87..1139 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12163-RA | 130..742 | 1..613 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12163-RC | 130..1320 | 1..1191 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12163-RC | 129..1425 | 1..1297 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12163-RC | 129..1425 | 1..1297 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5243152..5244254 | 195..1297 | 99 | <- | Minus |
3R | 5251424..5251616 | 1..194 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5243152..5244254 | 195..1297 | 99 | <- | Minus |
3R | 5251424..5251616 | 1..194 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5243152..5244254 | 195..1297 | 99 | <- | Minus |
3R | 5251424..5251616 | 1..194 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 1068874..1069976 | 195..1297 | 99 | <- | Minus |
arm_3R | 1077146..1077338 | 1..194 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 4983983..4985085 | 195..1297 | 99 | <- | Minus |
3R | 4992255..4992447 | 1..194 | 99 | Minus |
Translation from 86 to 1138
> RH22295.hyp MRLFAAATVALVLLLGQAAGEELAEERAGQAQGDAESTESSETTTDQAVS EPPITLVHVLNPGEREYLSPNLIGVQNIAMTFLPLSMNFVNIIDAFREIT AGVRYEILLNALDTKAIQPAEADIVCRLVILEKPWLRTQWGDKHRELVTS NCTDPAVNSVAGDPAEKARLLNEKYVSNSIFNGGQRKELSDAEMANLESQ ILTNLGPMRRKVSLTKTASAAPVRAPSPAAPSPAEAAPLDSAAPAVLTAS IAVTKLSPPDATNETATAISIDNVEEKAEEVEDKHEEEVVATTTIATELN ENEKRWLDDFLSVGAYDFEKSQEKGQQQEEAGREQKDPEVEATTIPTALS *
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12163-PC | 350 | CG12163-PC | 1..350 | 1..350 | 1746 | 100 | Plus |
CG12163-PA | 614 | CG12163-PA | 1..179 | 1..179 | 888 | 98.9 | Plus |
CG12163-PB | 475 | CG12163-PB | 1..138 | 1..157 | 184 | 37.6 | Plus |
Translation from 86 to 1138
> RH22295.pep MRLFAAATVALVLLLGQAAGEELAEERAGQAQGDAESTESSETTTDQAVS EPPITLVHVLNPGEREYLSPNLIGVQNIAMTFLPLSMNFVNIIDAFREIT AGVRYEILLNALDTKAIQPAEADIVCRLVILEKPWLRTQWGDKHRELVTS NCTDPAVNSVAGDPAEKARLLNEKYVSNSIFNGGQRKELSDAEMANLESQ ILTNLGPMRRKVSLTKTASAAPVRAPSPAAPSPAEAAPLDSAAPAVLTAS IAVTKLSPPDATNETATAISIDNVEEKAEEVEDKHEEEVVATTTIATELN ENEKRWLDDFLSVGAYDFEKSQEKGQQQEEAGREQKDPEVEATTIPTALS *
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16067-PA | 620 | GF16067-PA | 1..185 | 1..179 | 685 | 75.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11133-PA | 615 | GG11133-PA | 1..179 | 1..179 | 838 | 92.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22731-PA | 617 | GH22731-PA | 43..194 | 40..186 | 545 | 64.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12163-PC | 350 | CG12163-PC | 1..350 | 1..350 | 1746 | 100 | Plus |
CG12163-PA | 614 | CG12163-PA | 1..179 | 1..179 | 888 | 98.9 | Plus |
CG12163-PB | 475 | CG12163-PB | 1..138 | 1..157 | 184 | 37.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10216-PA | 605 | GI10216-PA | 1..179 | 1..195 | 579 | 60.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22196-PA | 627 | GL22196-PA | 1..188 | 1..179 | 707 | 75.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA27408-PC | 379 | GA27408-PC | 1..347 | 1..324 | 981 | 63.8 | Plus |
Dpse\GA27408-PA | 629 | GA27408-PA | 1..190 | 1..179 | 699 | 74 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10654-PA | 615 | GM10654-PA | 1..179 | 1..179 | 864 | 96.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19635-PA | 359 | GD19635-PA | 1..179 | 1..179 | 868 | 96.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11017-PA | 599 | GJ11017-PA | 1..169 | 1..191 | 592 | 63 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14287-PA | 610 | GK14287-PA | 1..170 | 1..177 | 582 | 65 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE25302-PA | 615 | GE25302-PA | 1..206 | 1..201 | 835 | 82.1 | Plus |