Clone RH22295 Report

Search the DGRC for RH22295

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:222
Well:95
Vector:pFlc-1
Associated Gene/TranscriptCG12163-RC
Protein status:RH22295.pep: gold
Sequenced Size:1313

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12163 2010-01-23 Manual selection by Sue Celniker

Clone Sequence Records

RH22295.complete Sequence

1313 bp assembled on 2012-12-12

GenBank Submission: BT122037.1

> RH22295.complete
GATTGTGAAACGAGCGCACCGAAAGTCGGCGAGTTTTCTGGCGGATATTT
AGGAGGCCCCCACCGCAGCCACTCACACACGCAAACATGAGGCTGTTTGC
GGCAGCAACAGTTGCGCTTGTATTGCTTCTGGGCCAAGCAGCTGGCGAGG
AGCTTGCGGAGGAGCGAGCGGGACAGGCACAGGGCGATGCGGAGAGCACG
GAATCTTCAGAAACAACAACGGACCAGGCGGTGAGTGAGCCCCCGATCAC
GCTGGTCCACGTTCTGAATCCCGGCGAGCGGGAGTATTTGTCACCCAACC
TGATTGGTGTCCAGAACATTGCGATGACCTTCCTGCCACTGTCGATGAAC
TTTGTGAATATCATCGACGCCTTTCGGGAAATCACCGCCGGAGTGCGCTA
TGAGATCCTGCTAAACGCGCTAGACACAAAGGCAATACAGCCGGCGGAAG
CGGACATAGTCTGCCGCCTGGTCATCCTGGAAAAGCCTTGGCTGCGCACC
CAGTGGGGCGACAAGCACCGCGAACTGGTTACCTCCAATTGCACCGACCC
AGCGGTGAACTCGGTGGCCGGAGATCCGGCAGAGAAGGCGCGACTGCTTA
ACGAGAAATATGTGAGTAATAGCATCTTTAATGGCGGTCAGAGGAAAGAA
CTGAGCGACGCAGAGATGGCCAATCTGGAGTCACAGATACTCACTAACCT
GGGACCTATGAGGCGGAAGGTCAGTCTGACCAAAACCGCTTCAGCGGCTC
CTGTTCGTGCACCTTCTCCTGCTGCTCCTTCTCCTGCCGAGGCTGCCCCT
CTGGATTCGGCAGCTCCTGCTGTATTAACCGCATCTATAGCAGTCACCAA
GCTTAGTCCACCTGACGCCACTAATGAGACGGCCACGGCAATTAGCATTG
ATAATGTGGAAGAAAAGGCAGAAGAGGTGGAGGACAAGCACGAAGAGGAG
GTCGTAGCCACCACCACAATCGCCACGGAGCTGAACGAAAATGAGAAGCG
TTGGCTCGACGATTTCCTATCGGTGGGTGCGTATGACTTCGAGAAGAGTC
AGGAGAAGGGGCAGCAACAGGAGGAGGCCGGCCGGGAGCAGAAGGATCCC
GAGGTGGAGGCTACTACCATACCGACAGCATTATCATGAATATTCTCATT
ATCATCCCAGACACACACACACACACTCACACACACAGCCAGCCCCATCG
TTCAGGGTCTCTGTCTTTCTCATATAAATACTCAGACCACTCATTATACA
TACTCACCCTAATGCGAACAATAAAAAAGGAAAATGTTATTTAATTGAAA
AAAAAAAAAAAAA

RH22295.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:36:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG12163-RA 2558 CG12163-RA 239..850 2..613 3060 100 Plus
CG12163.a 2039 CG12163.a 131..323 2..194 965 100 Plus
CG12163-RB 2141 CG12163-RB 239..431 2..194 965 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:04:46
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 1068816..1069920 1297..193 5495 99.8 Minus
chr3R 27901430 chr3R 1077088..1077280 194..2 965 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:24:41 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:04:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5243150..5244256 1299..193 5505 99.8 Minus
3R 32079331 3R 5251424..5251616 194..2 965 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:53:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 4983981..4985087 1299..193 5505 99.8 Minus
3R 31820162 3R 4992255..4992447 194..2 965 100 Minus
Blast to na_te.dros performed on 2019-03-15 14:04:44 has no hits.

RH22295.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:05:43 Download gff for RH22295.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 1068816..1069918 195..1297 97 <- Minus
chr3R 1077088..1077280 1..194 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-03-03 09:17:08 Download gff for RH22295.complete
Subject Subject Range Query Range Percent Splice Strand
CG12163-RA 1..527 87..613 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2013-01-07 15:40:55 Download gff for RH22295.complete
Subject Subject Range Query Range Percent Splice Strand
CG12163-RC 1..1053 87..1139 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:17:19 Download gff for RH22295.complete
Subject Subject Range Query Range Percent Splice Strand
CG12163-RC 1..1053 87..1139 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:49:24 Download gff for RH22295.complete
Subject Subject Range Query Range Percent Splice Strand
CG12163-RC 1..1053 87..1139 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-03-03 09:17:07 Download gff for RH22295.complete
Subject Subject Range Query Range Percent Splice Strand
CG12163-RA 130..742 1..613 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-07 15:40:54 Download gff for RH22295.complete
Subject Subject Range Query Range Percent Splice Strand
CG12163-RC 130..1320 1..1191 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:17:19 Download gff for RH22295.complete
Subject Subject Range Query Range Percent Splice Strand
CG12163-RC 129..1425 1..1297 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:49:24 Download gff for RH22295.complete
Subject Subject Range Query Range Percent Splice Strand
CG12163-RC 129..1425 1..1297 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:05:43 Download gff for RH22295.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5243152..5244254 195..1297 99 <- Minus
3R 5251424..5251616 1..194 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:05:43 Download gff for RH22295.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5243152..5244254 195..1297 99 <- Minus
3R 5251424..5251616 1..194 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:05:43 Download gff for RH22295.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5243152..5244254 195..1297 99 <- Minus
3R 5251424..5251616 1..194 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:17:19 Download gff for RH22295.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1068874..1069976 195..1297 99 <- Minus
arm_3R 1077146..1077338 1..194 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:32:10 Download gff for RH22295.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4983983..4985085 195..1297 99 <- Minus
3R 4992255..4992447 1..194 99   Minus

RH22295.hyp Sequence

Translation from 86 to 1138

> RH22295.hyp
MRLFAAATVALVLLLGQAAGEELAEERAGQAQGDAESTESSETTTDQAVS
EPPITLVHVLNPGEREYLSPNLIGVQNIAMTFLPLSMNFVNIIDAFREIT
AGVRYEILLNALDTKAIQPAEADIVCRLVILEKPWLRTQWGDKHRELVTS
NCTDPAVNSVAGDPAEKARLLNEKYVSNSIFNGGQRKELSDAEMANLESQ
ILTNLGPMRRKVSLTKTASAAPVRAPSPAAPSPAEAAPLDSAAPAVLTAS
IAVTKLSPPDATNETATAISIDNVEEKAEEVEDKHEEEVVATTTIATELN
ENEKRWLDDFLSVGAYDFEKSQEKGQQQEEAGREQKDPEVEATTIPTALS
*

RH22295.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:39:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG12163-PC 350 CG12163-PC 1..350 1..350 1746 100 Plus
CG12163-PA 614 CG12163-PA 1..179 1..179 888 98.9 Plus
CG12163-PB 475 CG12163-PB 1..138 1..157 184 37.6 Plus

RH22295.pep Sequence

Translation from 86 to 1138

> RH22295.pep
MRLFAAATVALVLLLGQAAGEELAEERAGQAQGDAESTESSETTTDQAVS
EPPITLVHVLNPGEREYLSPNLIGVQNIAMTFLPLSMNFVNIIDAFREIT
AGVRYEILLNALDTKAIQPAEADIVCRLVILEKPWLRTQWGDKHRELVTS
NCTDPAVNSVAGDPAEKARLLNEKYVSNSIFNGGQRKELSDAEMANLESQ
ILTNLGPMRRKVSLTKTASAAPVRAPSPAAPSPAEAAPLDSAAPAVLTAS
IAVTKLSPPDATNETATAISIDNVEEKAEEVEDKHEEEVVATTTIATELN
ENEKRWLDDFLSVGAYDFEKSQEKGQQQEEAGREQKDPEVEATTIPTALS
*

RH22295.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:07:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16067-PA 620 GF16067-PA 1..185 1..179 685 75.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:07:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11133-PA 615 GG11133-PA 1..179 1..179 838 92.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:07:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22731-PA 617 GH22731-PA 43..194 40..186 545 64.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:50:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG12163-PC 350 CG12163-PC 1..350 1..350 1746 100 Plus
CG12163-PA 614 CG12163-PA 1..179 1..179 888 98.9 Plus
CG12163-PB 475 CG12163-PB 1..138 1..157 184 37.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:07:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10216-PA 605 GI10216-PA 1..179 1..195 579 60.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22196-PA 627 GL22196-PA 1..188 1..179 707 75.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:07:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27408-PC 379 GA27408-PC 1..347 1..324 981 63.8 Plus
Dpse\GA27408-PA 629 GA27408-PA 1..190 1..179 699 74 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:07:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10654-PA 615 GM10654-PA 1..179 1..179 864 96.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19635-PA 359 GD19635-PA 1..179 1..179 868 96.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:07:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11017-PA 599 GJ11017-PA 1..169 1..191 592 63 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:07:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14287-PA 610 GK14287-PA 1..170 1..177 582 65 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:07:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25302-PA 615 GE25302-PA 1..206 1..201 835 82.1 Plus