Clone RH22417 Report

Search the DGRC for RH22417

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:224
Well:17
Vector:pFlc-1
Associated Gene/TranscriptCG11158-RA
Protein status:RH22417.pep: gold
Preliminary Size:1035
Sequenced Size:1667

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11158 2002-01-01 Sim4 clustering to Release 2
CG11158 2002-02-22 Blastp of sequenced clone
CG11158 2003-01-01 Sim4 clustering to Release 3
CG11158 2008-04-29 Release 5.5 accounting
CG11158 2008-08-15 Release 5.9 accounting
CG11158 2008-12-18 5.12 accounting

Clone Sequence Records

RH22417.complete Sequence

1667 bp (1667 high quality bases) assembled on 2002-02-22

GenBank Submission: AY089659

> RH22417.complete
GATTGGGCGCGATAGTTCGTTCCGTAATCGATAGAAGCGGCAGCAAACCA
GTTTGGAATAGCATTCGACATGGACAAGAAGCATCGCCTCGTGGTCTACG
ACTGCGACATTGGGACCGATGATGCCTGGGGATTGGCCATGTTGCTGCGC
GCGGAGGAGCTAACTCTGCGCGAAGGAAGGACCTGCAAAGTGTTGGCCAT
AACAACGGTGCATGGCAACACGGATGCGGACAATGGAACACTGAATGCCC
TGCGGGTGCTGCACACGTTGAACAGGCGCGATGTTCCGGTCTTTAGGGGC
TGTTACGAATCCATAGTGCCACGCACTTGGGAGTATACCAACTGTTTCCA
TGGCCAGGATGGCCTAAACGATGTGGGCAACTATCCTGTGGTCGATGTGG
AGCAGGAACTGCAACCGGAGCACGCTGTCAATGCCATGTACCGCCTGGCC
AGAGCTAATCCCGGCCAAGTGGACTTTCTGCTGTGCGGACCACTTACCAA
CTTTGCCAACTGCATCAATTTGTATGGAAACTCATTTCTGACGAACATTG
GTCGAGTCTATATAATGGGTGGCAACATATTCGGCAAGGGTAATGTCACG
AAAAGTGCCGAATTCAATTTCATGATGGATCCCGAGGCGGCGCACATTAC
CCTGGAGCGTCTGCTGGAACCGGCGATCATCCTGCCCTGGGAGCCCTGCA
TCGATGGAGAGTTCGACACCACCCTCGACTGGCGACTGAATGTCCTCGGA
GCGGTTGATCATCCCTTTATAGAGCTACTCACACGCGTGGAACGCTCCAT
GCTGGAGCCGCGAGGATTCGTGAAGTGGATCAGTTGTGATTCCCTACTCA
CCGCCGCCTATCTCTTCCCGGATGCGATGATCGCCGAACAGCGGCAGTAC
TACGCCACCGTGGAGCTGAGTGGCATCCACACCCGTGGCCAGATGGTGCT
GGATCACCTGCGCGGCCGGAAAGTGGACGACATTCATGGCAAGAAGATAA
ATGTGCACATCATTAGGCGCCTCACTAGTGGAGCGACCTTCCGCACGATC
ATCGCCTGGACGGGATTCCTTCCCAATGCCGATATCGCACAACTATGCGC
TTAGCATCTTAAATATACATATCACGTTTACCGCAATTTCCAAAACCCTT
TCATACGATTTATGGCCTGATAAGGCATCAGGTGATCTATGACTTGGCCA
CAGATTATATTAAATGGACTGCGAAAGAATATGGTTGTAGATAGGGGGGT
TAGTAGAGAGTCGAGCATGATGATAGCCCAATTACCGAGATATGTAAGTT
AATAGCAATCACCTGTCATACGAGTGATTGGCCAAATGATCTCTTGCATC
ACTATAGATTCTAGATGGAACCATCGTGTGTCCCGCCCACGTCCATTTGA
AACTACAAAAATGTCTGGTGTATATATATTTCCTTCTACAGAAGTGTATA
ATCAGTGTTCCATTAAATCGATCTGATGCGAGTGTTCAAATTCACAATGT
GCTATAAATCTACATGCTTGACTACCAACAAAAAAGAACAAAAAAAAAAG
TAATGCCCATTTCCCAAGGAAGTGTTTTCAAAGATTGGGAATTAGCATTA
GCTACATTGGTCTTACGTTCATACATAAAATATAATTTACAATTCAGAAA
GGAAAAAAAAAAAAAAA

RH22417.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:24:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG11158-RA 1753 CG11158-RA 94..1748 2..1655 8235 99.9 Plus
CG9940-RA 4378 CG9940-RA 4262..4377 1655..1540 580 100 Minus
CG9940-RB 4242 CG9940-RB 4134..4242 1655..1547 545 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:13:29
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 13573975..13575345 283..1652 6805 99.9 Plus
chrX 22417052 chrX 13573637..13573919 2..284 1415 100 Plus
chr2L 23010047 chr2L 12450811..12451430 1013..394 385 70.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:24:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:13:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13683246..13684619 283..1655 6820 99.9 Plus
X 23542271 X 13682908..13683190 2..284 1415 100 Plus
2L 23513712 2L 12452170..12452789 1013..394 385 70.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:54:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 13691344..13692717 283..1655 6830 99.9 Plus
X 23527363 X 13691006..13691288 2..284 1415 100 Plus
2L 23513712 2L 12452170..12452327 1013..856 235 76.5 Minus
2L 23513712 2L 12452477..12452622 706..561 190 75.3 Minus
Blast to na_te.dros performed on 2019-03-16 14:13:27 has no hits.

RH22417.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:14:43 Download gff for RH22417.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 13573636..13573917 1..282 99 -> Plus
chrX 13573975..13575345 283..1652 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:43:21 Download gff for RH22417.complete
Subject Subject Range Query Range Percent Splice Strand
CG11158-RA 1..1035 70..1104 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:37:12 Download gff for RH22417.complete
Subject Subject Range Query Range Percent Splice Strand
CG11158-RA 1..1035 70..1104 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 14:57:31 Download gff for RH22417.complete
Subject Subject Range Query Range Percent Splice Strand
CG11158-RA 1..1035 70..1104 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:08:09 Download gff for RH22417.complete
Subject Subject Range Query Range Percent Splice Strand
CG11158-RA 1..1035 70..1104 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:25:06 Download gff for RH22417.complete
Subject Subject Range Query Range Percent Splice Strand
CG11158-RA 1..1035 70..1104 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:02:30 Download gff for RH22417.complete
Subject Subject Range Query Range Percent Splice Strand
CG11158-RA 2..1653 2..1652 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:37:11 Download gff for RH22417.complete
Subject Subject Range Query Range Percent Splice Strand
CG11158-RA 2..1653 2..1652 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:57:31 Download gff for RH22417.complete
Subject Subject Range Query Range Percent Splice Strand
CG11158-RA 1..1608 46..1652 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:08:10 Download gff for RH22417.complete
Subject Subject Range Query Range Percent Splice Strand
CG11158-RA 2..1653 2..1652 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:25:06 Download gff for RH22417.complete
Subject Subject Range Query Range Percent Splice Strand
CG11158-RA 1..1608 46..1652 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:14:43 Download gff for RH22417.complete
Subject Subject Range Query Range Percent Splice Strand
X 13682907..13683188 1..282 99 -> Plus
X 13683246..13684616 283..1652 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:14:43 Download gff for RH22417.complete
Subject Subject Range Query Range Percent Splice Strand
X 13682907..13683188 1..282 99 -> Plus
X 13683246..13684616 283..1652 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:14:43 Download gff for RH22417.complete
Subject Subject Range Query Range Percent Splice Strand
X 13682907..13683188 1..282 99 -> Plus
X 13683246..13684616 283..1652 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:57:31 Download gff for RH22417.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13576940..13577221 1..282 99 -> Plus
arm_X 13577279..13578649 283..1652 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:42:12 Download gff for RH22417.complete
Subject Subject Range Query Range Percent Splice Strand
X 13691005..13691286 1..282 99 -> Plus
X 13691344..13692714 283..1652 99   Plus

RH22417.pep Sequence

Translation from 69 to 1103

> RH22417.pep
MDKKHRLVVYDCDIGTDDAWGLAMLLRAEELTLREGRTCKVLAITTVHGN
TDADNGTLNALRVLHTLNRRDVPVFRGCYESIVPRTWEYTNCFHGQDGLN
DVGNYPVVDVEQELQPEHAVNAMYRLARANPGQVDFLLCGPLTNFANCIN
LYGNSFLTNIGRVYIMGGNIFGKGNVTKSAEFNFMMDPEAAHITLERLLE
PAIILPWEPCIDGEFDTTLDWRLNVLGAVDHPFIELLTRVERSMLEPRGF
VKWISCDSLLTAAYLFPDAMIAEQRQYYATVELSGIHTRGQMVLDHLRGR
KVDDIHGKKINVHIIRRLTSGATFRTIIAWTGFLPNADIAQLCA*

RH22417.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:54:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22595-PA 358 GF22595-PA 12..351 2..343 1357 72.8 Plus
Dana\GF22351-PA 366 GF22351-PA 30..363 6..341 601 39.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:54:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17802-PA 344 GG17802-PA 1..344 1..344 1704 91.3 Plus
Dere\GG19494-PA 369 GG19494-PA 32..364 6..339 575 38.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:54:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11940-PA 343 GH11940-PA 6..339 2..337 586 40.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:24:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG11158-PA 344 CG11158-PA 1..344 1..344 1838 100 Plus
CG5418-PA 355 CG5418-PA 7..347 3..343 1220 67.5 Plus
CG12177-PC 362 CG12177-PC 25..325 6..301 583 41.2 Plus
CG12177-PB 362 CG12177-PB 25..325 6..301 583 41.2 Plus
CG12177-PA 362 CG12177-PA 25..325 6..301 583 41.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14015-PA 334 GI14015-PA 4..329 1..334 585 41.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:54:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19860-PA 356 GL19860-PA 12..349 7..343 1283 71.7 Plus
Dper\GL19853-PA 360 GL19853-PA 23..356 6..339 592 40.1 Plus
Dper\GL19857-PA 288 GL19857-PA 3..284 62..339 520 40 Plus
Dper\GL18288-PA 195 GL18288-PA 1..191 151..339 365 41.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:54:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10803-PA 356 GA10803-PA 12..349 7..343 1290 72 Plus
Dpse\GA11456-PA 360 GA11456-PA 23..356 6..339 596 40.3 Plus
Dpse\GA28143-PA 178 GA28143-PA 3..165 62..222 310 40 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:54:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17628-PA 344 GM17628-PA 1..343 1..343 1797 97.7 Plus
Dsec\GM26185-PA 355 GM26185-PA 10..347 6..343 1204 68.7 Plus
Dsec\GM17597-PA 361 GM17597-PA 24..351 6..334 556 38.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:54:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17140-PA 321 GD17140-PA 1..321 24..344 1673 97.2 Plus
Dsim\GD22117-PA 355 GD22117-PA 10..347 6..343 1199 68.4 Plus
Dsim\GD15879-PA 361 GD15879-PA 24..354 6..337 553 38.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:54:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25813-PA 354 GK25813-PA 11..347 8..342 1239 68.3 Plus
Dwil\GK11421-PA 351 GK11421-PA 10..338 8..342 1196 68.7 Plus
Dwil\GK25228-PA 335 GK25228-PA 3..302 6..298 572 41.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:54:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17098-PA 344 GE17098-PA 1..344 1..344 1675 89.5 Plus
Dyak\GE16146-PA 358 GE16146-PA 22..348 6..334 569 39.1 Plus

RH22417.hyp Sequence

Translation from 69 to 1103

> RH22417.hyp
MDKKHRLVVYDCDIGTDDAWGLAMLLRAEELTLREGRTCKVLAITTVHGN
TDADNGTLNALRVLHTLNRRDVPVFRGCYESIVPRTWEYTNCFHGQDGLN
DVGNYPVVDVEQELQPEHAVNAMYRLARANPGQVDFLLCGPLTNFANCIN
LYGNSFLTNIGRVYIMGGNIFGKGNVTKSAEFNFMMDPEAAHITLERLLE
PAIILPWEPCIDGEFDTTLDWRLNVLGAVDHPFIELLTRVERSMLEPRGF
VKWISCDSLLTAAYLFPDAMIAEQRQYYATVELSGIHTRGQMVLDHLRGR
KVDDIHGKKINVHIIRRLTSGATFRTIIAWTGFLPNADIAQLCA*

RH22417.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:43:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG11158-PA 344 CG11158-PA 1..344 1..344 1838 100 Plus
CG5418-PA 355 CG5418-PA 7..347 3..343 1220 67.5 Plus
CG12177-PC 362 CG12177-PC 25..325 6..301 583 41.2 Plus
CG12177-PB 362 CG12177-PB 25..325 6..301 583 41.2 Plus
CG12177-PA 362 CG12177-PA 25..325 6..301 583 41.2 Plus