Clone RH23185 Report

Search the DGRC for RH23185

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:231
Well:85
Vector:pFlc-1
Associated Gene/TranscriptAtg10-RB
Protein status:RH23185.pep: full length peptide match
Preliminary Size:1751
Sequenced Size:3487

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12822 2008-04-29 Release 5.5 accounting
CG12821 2008-08-15 Release 5.9 accounting
CG12822 2008-08-15 Release 5.9 accounting
CG12821 2008-12-18 5.12 accounting
CG12822 2008-12-18 5.12 accounting

Clone Sequence Records

RH23185.complete Sequence

3487 bp (3487 high quality bases) assembled on 2005-08-09

GenBank Submission: BT023823

> RH23185.complete
GTGCGTTTGAGACAGGCAAATTGCCATGAGTGTCCTTTTGCTACTGGTAT
AGTTCAGTTCACACCGATTTTGCCTTGACCATGATGCAGGCAGCAAGTGC
GCAACCTGCAGCATGTGCAGCGCAAGGACATTGAGACGATAACCCGCCTG
CTGCAGGACTTCCGCTGCGAGGGGTGTGCGAACAACAACAAAAGCGCCAA
GGACAAGGTCGCCGGCGAGAAGCAGGAGCACCAGCACCAACAGCAGACGC
AGGACCAGCAGACGGGCCAAGGTCAGAGCAATTATACCAATGGTGGGCAC
TGCTTGGGAGAGGACTACGCACACTTTCGGCCCATAGGAGTGATCCGGAC
AGCATTCCCAGAGAAGCGGGCCGTGCCGAGGCAGTCAATTGTGGGCAGTC
GCCTGCGGGGTATCATCCAACTGAACGACGGTGTGTTCACCAATCCGGAG
CACTCCTTGGAGGGACTAGAGGACTTTTCCCATCTGTGGCTCATCTATCA
TTTTCACCGCAACAATTCCCACCCCAAGGCCAAGGTGGCGCCTCCCCGTC
TTGGTGGGGAGCGGGTGGGTGTGTTTTCCACACGATCTCCACACCGCCCG
TGTCCCATTGGTCTCTCGTTGGTGGAGATTGAGAAGATCGAGAACGCCAC
CATTAGTTTCTTTGGTACGGACATGGTAGACGGCACACCCGTGTTGGACA
TTAAGCCCTACATTCCACACTACGATGCACCATCCTTGAGCGTTGACTCA
GGAAGAACCTCTGTTGGACCGCATGAGAGCAGCCTGGACTTCTACGACTC
CAGACAGGAGCCTGACGGAGAGGAATCGGACCTGGAACTGTATGGAGCAG
CTGGCTACAGCGGGAACGCGGGCATTGGAGCTGACGCTATTCTGCCGCCA
CCCAGCGCCGTGCGAGTGCCCAACTGGGTGGTGGCCAGCAATAGACTTAG
CGTGACCTTTAACGAGCATGCCGAGGCGCAGTTAAAGGAGCTGCAGGTGG
AGAAGCAGTGCATCGTGGACATTCTGGAGGCGGATCCGCGCTCCGTTTAC
TTGCGCACAAAATATGGCTCGCAAATATTTACCTTCCAGCTGCGGGAGGT
CACGGTGACGTGCAAATTTGATGACAAGGCCGGCACGGTGACTGTGGTTC
AGGTCCGGCGCAACGAGAATGTCCAGGTTACCGCCCTGGACGGCGACCTG
CGCAGCGCCTAACTTATGGATTATTGCAATTGATATTCGTTAATTGACGA
TTTGTGTTAAGCTTAAGTGTATTGTGTTGAGGAGCTTTAACCTTTGGCGT
TTCAATTTTGCTCTAGAATACAGGACATTCTTAAATATGTATGAGGCTTG
TTTCCCACGCAAAAGAAATTGTTTTCTTTCAAGTATCGTTACGCGTGGGT
ATTTGAAGTGTTTAAAGATTTTAACACGCATATTTTTGTGCTTTATTTTC
AGCATTATGGGCGACTTGAGCTGGAAAGATTTTTTGAGCCAGGCCAAGCA
GTTCCTCGAAATTTCGCAGAAGTTGGGTGATAATTGGATATTGGAACAAA
AGGACTCGAATGAACCAAACACCTATCTCAAATGTAGTCAGAAGATTAAA
TGCCGAGGTGGCAAGGACAACTCGGCTGAGTTGGTTAGTGTGGAGTACCA
TGTGGTCTTCAGTGTTTCCTATCAAGTACCAATGTTGTTCTTCCAGGCAC
ACAGATCAGATGGAAGTCTTTTGGATGTGGAGGCCACTTGGCGAATGTTC
ATGCCCGAATCGAAGGCCAGCGATCTCCACCAGATACTCACCCAGATGGA
TCACCCGGTGCTTTTCAGACCCTTTATGGCATTGCATCCATGCCGCACCG
CCGAAGTGCTAAAGCAGTTCGGAAAGCCCAGCTGCAACCAGGTGCTTACC
TTCATCAGTCTGTACGGACCCCACGTGCAGTTGCACCTGCAAAATGCGTA
CGGCTTAAGCCAAGAGTATACGTAATTTGAATTTATTGGTGGTTTTTTTT
AAACACTGGTTATAGGAGTATACATGTATGGATAATATGGCTTATGCCCT
TTTACAGTTTTACATTTCGTTCCCTATTTTAGAGTGGTTACACCTTAACT
GGGGACCCCATCGCCACCAGTTCTTGGCACAAGTGAAGATCCATGGGGCA
CAGGGTCGTACCATGTGACATGACACCTGAAGCAGCACATCACATGGATA
ATTTAAGTTAAAAATGAAAAACTAATGAAGTTACGAAAGGAACCCAGCTT
TGTACACAGGTTATAACTCCGCTTAGTGAATACATTCAACTACTTAGGCA
TTATTTATCGCTTAACGTAGTGTATAGTTTTCAAGTTCCACTTGCTATTT
TCGTTATTTTTTCTCGGCTAATATCAACTAGTAGCTACTTTTCGATTACT
TCGATTTAACATTAGACAGGTATACGCTTACATCTAGTTGTACTGTACAC
AAGCGTGGCCTTGCTGAGCCGCTTTGCTTTGCATTTTACTAATATTAAGT
GGTTCATTTATAATTAATGTTAACTGGCTACTGTGTGGCATTAGCGGCGT
CCCGGCGCTGGCACCAAAACCCCGTGTTCCATGCGGAACCGAGGACTCGT
GGGCGCGGGGAATCGCATTGAAAATGTTTATTTGCAAAATTAAATCGACT
TTTATGTATATTACGTTGGTTTGCAATAGTAGTTCGACAGTATACAAGAG
TCCACGTACATTAAGGATTAATCGTGTGCAGTGCGGATATCCTGCTGAGG
AAGTCTAAGGTCGGTTAGGATGGCACGTACGAGGAGAACTCAATTTGGAC
TCGGAAAATGGCTAGGATATCTCGACGCGCTCCATAACATTAGGTGTGAA
GTGTTTGTAAAAACTATGGTTAGTCTTCGAAGTAAGCTTTAATATTCCGA
ACTACTTAGGGGGAGTAACGATTCGAAGGACACATATTATATTGCGAGTA
TATCCAATTAACATTCCATCTGAGCAGTGCCTCTCATATTACCTAATAAT
TCAAAAATAGTGCTCTTTGGTTTCGTGCCATTCAATAACTATCAGCTAGT
AGTTATTTGATTCTAGGGATACTACGTTTAACAAACAAGATTATTGGTGA
TTTCACTTTACCAGATTTGCACTACTTCGTGCTTTGCGTCTAAAAATGTA
CACGTGGTCTGGGAAATGCTTGGAATGTGGTTTTTCGATTTGAAATTTTT
CCTGGGCGGTTAAATTTACTGATGGGGGTGAGAAAAGGCTTGGGACAGGG
TATTCTTCTATGAGTATTGTATTTGTGAGGACCTTATGGCACTTAACAAA
CATATACGACTATACGAAATATATATGCTATGTATGTATTGTTCAACATC
CGGTTTGTGTCATCTCAATATATGTGTTCATATATAAAATTTCGTTTAAA
GCTGCACCATTTAGTTGACACTTGCATCATGCCAAGTTACATTTGTTTCG
CTATATACAATATAAATTACCAAAAAAAAAAAAAAAA

RH23185.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:31:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG12821-RC 3474 CG12821-RC 1..3474 1..3471 17200 99.8 Plus
CG12821.a 1973 CG12821.a 598..1973 2083..3457 6840 99.9 Plus
CG12821.b 1750 CG12821.b 598..1750 2083..3235 5765 100 Plus
CG12821.a 1973 CG12821.a 24..597 1451..2025 2835 99.8 Plus
CG12821.b 1750 CG12821.b 24..597 1451..2025 2835 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:29:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3721632..3723395 1708..3471 8680 99.7 Plus
chr2R 21145070 chr2R 3720549..3721355 749..1553 3970 99.8 Plus
chr2R 21145070 chr2R 3720021..3720498 275..752 2390 100 Plus
chr2R 21145070 chr2R 3716577..3716853 1..276 1335 99.6 Plus
chr2R 21145070 chr2R 3719687..3719963 1..276 1335 99.6 Plus
chr2R 21145070 chr2R 3716911..3717171 275..535 1305 100 Plus
chr2R 21145070 chr2R 3721417..3721576 1550..1709 800 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:24:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:29:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7834311..7836090 1708..3487 8790 99.8 Plus
2R 25286936 2R 7833228..7834034 749..1553 3970 99.8 Plus
2R 25286936 2R 7832700..7833177 275..752 2390 100 Plus
2R 25286936 2R 7829256..7829532 1..276 1335 99.6 Plus
2R 25286936 2R 7832366..7832642 1..276 1335 99.6 Plus
2R 25286936 2R 7829590..7829850 275..535 1305 100 Plus
2R 25286936 2R 7834096..7834255 1550..1709 800 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:22:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7835510..7837289 1708..3487 8810 99.8 Plus
2R 25260384 2R 7834427..7835233 749..1553 3980 99.7 Plus
2R 25260384 2R 7833899..7834376 275..752 2390 100 Plus
2R 25260384 2R 7833565..7833841 1..276 1345 99.6 Plus
2R 25260384 2R 7830455..7830731 1..276 1345 99.6 Plus
2R 25260384 2R 7830789..7831049 275..535 1305 100 Plus
2R 25260384 2R 7835295..7835454 1550..1709 800 100 Plus
Blast to na_te.dros performed 2019-03-16 15:29:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6727..6891 90..260 157 59.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6532..6590 225..284 117 68.3 Plus

RH23185.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:30:41 Download gff for RH23185.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3719687..3719963 1..276 99 -> Plus
chr2R 3720023..3720497 277..751 100 -> Plus
chr2R 3720552..3721354 752..1552 99 -> Plus
chr2R 3721420..3721576 1553..1709 100 -> Plus
chr2R 3721634..3723395 1710..3471 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:43:28 Download gff for RH23185.complete
Subject Subject Range Query Range Percent Splice Strand
CG12822-RB 53..1185 78..1212 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:54:57 Download gff for RH23185.complete
Subject Subject Range Query Range Percent Splice Strand
CG12822-RB 53..1185 78..1212 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:12:29 Download gff for RH23185.complete
Subject Subject Range Query Range Percent Splice Strand
CG12822-RB 53..1185 78..1212 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:35:37 Download gff for RH23185.complete
Subject Subject Range Query Range Percent Splice Strand
CG12822-RB 53..1185 78..1212 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:43:27 Download gff for RH23185.complete
Subject Subject Range Query Range Percent Splice Strand
CG12822-RB 53..1185 78..1212 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:30:50 Download gff for RH23185.complete
Subject Subject Range Query Range Percent Splice Strand
CG12821-RC 1..3474 1..3471 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:54:56 Download gff for RH23185.complete
Subject Subject Range Query Range Percent Splice Strand
CG12821-RC 1..3474 1..3471 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:12:29 Download gff for RH23185.complete
Subject Subject Range Query Range Percent Splice Strand
CG12821-RD 52..1516 1451..2916 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:35:37 Download gff for RH23185.complete
Subject Subject Range Query Range Percent Splice Strand
CG12821-RC 1..3474 1..3471 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:43:27 Download gff for RH23185.complete
Subject Subject Range Query Range Percent Splice Strand
Atg10-RD 52..1516 1451..2916 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:30:41 Download gff for RH23185.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7832366..7832642 1..276 99 -> Plus
2R 7832702..7833176 277..751 100 -> Plus
2R 7833231..7834033 752..1552 99 -> Plus
2R 7834099..7834255 1553..1709 100 -> Plus
2R 7834313..7836074 1710..3471 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:30:41 Download gff for RH23185.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7832366..7832642 1..276 99 -> Plus
2R 7832702..7833176 277..751 100 -> Plus
2R 7833231..7834033 752..1552 99 -> Plus
2R 7834099..7834255 1553..1709 100 -> Plus
2R 7834313..7836074 1710..3471 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:30:41 Download gff for RH23185.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7832366..7832642 1..276 99 -> Plus
2R 7832702..7833176 277..751 100 -> Plus
2R 7833231..7834033 752..1552 99 -> Plus
2R 7834099..7834255 1553..1709 100 -> Plus
2R 7834313..7836074 1710..3471 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:12:29 Download gff for RH23185.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3719871..3720147 1..276 99 -> Plus
arm_2R 3720207..3720681 277..751 100 -> Plus
arm_2R 3720736..3721538 752..1552 99 -> Plus
arm_2R 3721604..3721760 1553..1709 100 -> Plus
arm_2R 3721818..3723579 1710..3471 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:14:12 Download gff for RH23185.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7833565..7833841 1..276 99 -> Plus
2R 7833901..7834375 277..751 100 -> Plus
2R 7834430..7835232 752..1552 99 -> Plus
2R 7835298..7835454 1553..1709 100 -> Plus
2R 7835512..7837273 1710..3471 99   Plus

RH23185.pep Sequence

Translation from 1336 to 1974

> RH23185.pep
MYEACFPRKRNCFLSSIVTRGYLKCLKILTRIFLCFIFSIMGDLSWKDFL
SQAKQFLEISQKLGDNWILEQKDSNEPNTYLKCSQKIKCRGGKDNSAELV
SVEYHVVFSVSYQVPMLFFQAHRSDGSLLDVEATWRMFMPESKASDLHQI
LTQMDHPVLFRPFMALHPCRTAEVLKQFGKPSCNQVLTFISLYGPHVQLH
LQNAYGLSQEYT*

RH23185.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:18:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13639-PA 166 GF13639-PA 1..166 41..212 727 77.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:18:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23309-PA 171 GG23309-PA 1..171 41..212 863 93 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:18:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21294-PA 174 GH21294-PA 10..169 44..207 610 65.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:07
Subject Length Description Subject Range Query Range Score Percent Strand
Atg10-PD 172 CG12821-PD 1..172 41..212 916 100 Plus
Atg10-PB 172 CG12821-PB 1..172 41..212 916 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:18:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19784-PA 114 GI19784-PA 1..109 102..210 448 70.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:19:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20628-PA 96 GL20628-PA 11..96 124..209 380 76.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:19:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25591-PB 166 GA25591-PB 1..166 44..209 698 72.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:19:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20987-PA 172 GM20987-PA 1..172 41..212 874 93 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:19:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10514-PA 172 GD10514-PA 1..172 41..212 861 91.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:19:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17730-PA 174 GJ17730-PA 3..164 42..207 620 66.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:19:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21969-PA 191 GK21969-PA 1..187 41..209 550 56 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:19:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19154-PA 172 GE19154-PA 1..172 41..212 857 90.7 Plus

RH23185.hyp Sequence

Translation from 1338 to 1974

> RH23185.hyp
MYEACFPRKRNCFLSSIVTRGYLKCLKILTRIFLCFIFSIMGDLSWKDFL
SQAKQFLEISQKLGDNWILEQKDSNEPNTYLKCSQKIKCRGGKDNSAELV
SVEYHVVFSVSYQVPMLFFQAHRSDGSLLDVEATWRMFMPESKASDLHQI
LTQMDHPVLFRPFMALHPCRTAEVLKQFGKPSCNQVLTFISLYGPHVQLH
LQNAYGLSQEYT*

RH23185.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:27:00
Subject Length Description Subject Range Query Range Score Percent Strand
Atg10-PD 172 CG12821-PD 1..172 41..212 916 100 Plus
Atg10-PB 172 CG12821-PB 1..172 41..212 916 100 Plus