BDGP Sequence Production Resources |
Search the DGRC for RH24252
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 242 |
Well: | 52 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG42813-RA |
Protein status: | RH24252.pep: gold |
Sequenced Size: | 983 |
Gene | Date | Evidence |
---|---|---|
CG42813-RA | 2011-02-22 | Manual selection by Sue Celniker |
983 bp assembled on 2011-03-18
GenBank Submission: BT126160.1
> RH24252.complete AACCAGGCAGTCAGCTGATTGCCACTGCCGTGTTTTCGTGCACCAAGTCC ACTTTTTCAGCATGGAGAACGTTTCCAAGATTTGGCTGGGTCCCCTGCCC CAGGATTCGCCGTACGTAAAGCCCTTCCGGCTGTACTACGTCCAGAATGG CGTGGAGAAGAACTGGGACCTGCTGAAGGTCCACGATAGTGTGGCTATTA TCTTGTACAACACTTCTCGCCAGAAACTGGTCCTGGTCCGCCAGTTCCGA CCCGCCGTCTACCACGGCATCATCTCCAGCGCCAAGGGCACCTTCGATGA GGTGGACCTCAAGGAGTTCCCGCCCGCCATCGGTGTCACCTTGGAACTGT GCGCCGGCATCGTGGACAAAAACAAAAGCTGGGTGGAAATCGCTCGGGAG GAAGTGGTCGAGGAGTGTGGCTACGATGTGCCCGTGGAACGCATTGAGGA AGTCATGGTCTACAGATCTGGAGTTGGTTCATCGGGTGCCAAGCAGACCA TGTACTACTGCGAGGTGACCGATGCGGACAAGGCCACAGGTGGTGGCGGC GTCGACGACGAGATCATCGAGGTGGTGGAGCTGTCCCTGGAGGAGGCCAA GCGGATGATCCAACAGGGAGCCGTCAACAACAGCCCGCCCAGCTGCCTGA TGGGCCTGATGTGGTTCTTCGCCAACAGGGCACCCGGTGCGAAGGCCTAG AGGCGAACGCTGTTGCTGTTGATTCACCCAGATAAGCGGCGGCCGTGATA AGATGATAAGATGATAAGATGCGTCCGCATCCGCAGCGTTGCCTTATACA CATCTTTTAGTCAACACCAACCATTTCGAATGCTTTCCAACCGAGCGCAT TGTGAGTGCGCCTAGCGCACACGATATAATACTGAAATTCCCGTGCCTGT CGAGGCTTACCTTATGATATGTATACCGTGTAATATGTAATAAACCCTGG CCAGCTGTCCGCTCACGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 23050366..23050868 | 965..463 | 2515 | 100 | Minus |
chr3R | 27901430 | chr3R | 23050992..23051450 | 465..7 | 2295 | 100 | Minus |
chr3L | 24539361 | chr3L | 15090523..15090704 | 644..463 | 685 | 91.8 | Minus |
chr3L | 24539361 | chr3L | 15090317..15090470 | 963..811 | 480 | 89 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 27227438..27227944 | 969..463 | 2520 | 99.8 | Minus |
3R | 32079331 | 3R | 27228068..27228526 | 465..7 | 2295 | 100 | Minus |
3L | 28110227 | 3L | 15100462..15100643 | 644..463 | 685 | 91.8 | Minus |
3L | 28110227 | 3L | 15100256..15100409 | 963..811 | 495 | 89.6 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 26968269..26968775 | 969..463 | 2520 | 99.8 | Minus |
3R | 31820162 | 3R | 26968899..26969357 | 465..7 | 2295 | 100 | Minus |
3L | 28103327 | 3L | 15093562..15093743 | 644..463 | 685 | 91.7 | Minus |
3L | 28103327 | 3L | 15093356..15093509 | 963..811 | 505 | 89.6 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 23050364..23050865 | 466..967 | 94 | <- | Minus |
chr3R | 23050992..23051450 | 7..465 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42813-RA | 1..639 | 62..700 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42813-RA | 1..639 | 62..700 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42813-RB | 1..639 | 62..700 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42813-RA | 1..957 | 11..967 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42813-RA | 1..957 | 11..967 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42813-RB | 36..996 | 7..967 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 27227440..27227941 | 466..967 | 99 | <- | Minus |
3R | 27228068..27228526 | 7..465 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 27227440..27227941 | 466..967 | 99 | <- | Minus |
3R | 27228068..27228526 | 7..465 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 27227440..27227941 | 466..967 | 99 | <- | Minus |
3R | 27228068..27228526 | 7..465 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 23053162..23053663 | 466..967 | 99 | <- | Minus |
arm_3R | 23053790..23054248 | 7..465 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 26968271..26968772 | 466..967 | 99 | <- | Minus |
3R | 26968899..26969357 | 7..465 | 100 | Minus |
Translation from 1 to 699
> RH24252.pep TRQSADCHCRVFVHQVHFFSMENVSKIWLGPLPQDSPYVKPFRLYYVQNG VEKNWDLLKVHDSVAIILYNTSRQKLVLVRQFRPAVYHGIISSAKGTFDE VDLKEFPPAIGVTLELCAGIVDKNKSWVEIAREEVVEECGYDVPVERIEE VMVYRSGVGSSGAKQTMYYCEVTDADKATGGGGVDDEIIEVVELSLEEAK RMIQQGAVNNSPPSCLMGLMWFFANRAPGAKA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22943-PA | 406 | GF22943-PA | 193..400 | 21..228 | 1032 | 89.4 | Plus |
Dana\GF22943-PA | 406 | GF22943-PA | 1..191 | 32..220 | 561 | 55.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12132-PA | 438 | GG12132-PA | 224..438 | 18..232 | 1113 | 97.2 | Plus |
Dere\GG12132-PA | 438 | GG12132-PA | 27..225 | 24..220 | 612 | 55.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21306-PA | 211 | GH21306-PA | 1..208 | 21..228 | 994 | 85.6 | Plus |
Dgri\GH21295-PA | 228 | GH21295-PA | 20..227 | 21..226 | 599 | 51 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG42813-PA | 212 | CG31063-PA | 1..212 | 21..232 | 1108 | 100 | Plus |
CG42813-PB | 212 | CG42813-PB | 1..212 | 21..232 | 1108 | 100 | Plus |
CG42814-PA | 237 | CG31063-PA | 27..233 | 24..228 | 641 | 54.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10493-PA | 442 | GI10493-PA | 232..440 | 21..229 | 982 | 83.7 | Plus |
Dmoj\GI10493-PA | 442 | GI10493-PA | 20..231 | 17..226 | 577 | 50.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23606-PA | 1241 | GL23606-PA | 1028..1238 | 18..228 | 1042 | 86.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA26653-PA | 211 | GA26653-PA | 1..208 | 21..228 | 1000 | 86.5 | Plus |
Dpse\GA26652-PA | 182 | GA26652-PA | 1..179 | 51..228 | 510 | 52 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10125-PA | 404 | GM10125-PA | 190..404 | 18..232 | 1133 | 98.6 | Plus |
Dsec\GM10125-PA | 404 | GM10125-PA | 1..191 | 32..220 | 565 | 52.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18086-PA | 438 | GD18086-PA | 224..438 | 18..232 | 1125 | 98.1 | Plus |
Dsim\GD18086-PA | 438 | GD18086-PA | 27..225 | 24..220 | 605 | 53.8 | Plus |
Dsim\GD12577-PA | 81 | GD12577-PA | 43..78 | 175..210 | 140 | 80.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23175-PA | 211 | GJ23175-PA | 1..210 | 21..230 | 1014 | 86.7 | Plus |
Dvir\GJ23174-PA | 234 | GJ23174-PA | 22..233 | 17..226 | 609 | 51.9 | Plus |
Translation from 7 to 699
> RH24252.hyp QSADCHCRVFVHQVHFFSMENVSKIWLGPLPQDSPYVKPFRLYYVQNGVE KNWDLLKVHDSVAIILYNTSRQKLVLVRQFRPAVYHGIISSAKGTFDEVD LKEFPPAIGVTLELCAGIVDKNKSWVEIAREEVVEECGYDVPVERIEEVM VYRSGVGSSGAKQTMYYCEVTDADKATGGGGVDDEIIEVVELSLEEAKRM IQQGAVNNSPPSCLMGLMWFFANRAPGAKA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG42813-PA | 212 | CG31063-PA | 1..212 | 19..230 | 1108 | 100 | Plus |
CG42813-PB | 212 | CG42813-PB | 1..212 | 19..230 | 1108 | 100 | Plus |
CG42814-PA | 237 | CG31063-PA | 27..233 | 22..226 | 641 | 54.6 | Plus |