BDGP Sequence Production Resources |
Search the DGRC for RH24480
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 244 |
Well: | 80 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG43897-RI |
Protein status: | RH24480.pep: gold |
Preliminary Size: | 1726 |
Sequenced Size: | 2564 |
Gene | Date | Evidence |
---|---|---|
CG33205 | 2003-02-27 | Blastp of sequenced clone |
CG33205 | 2008-04-29 | Release 5.5 accounting |
CG33205 | 2008-08-15 | Release 5.9 accounting |
CG33205 | 2008-12-18 | 5.12 accounting |
2564 bp (2564 high quality bases) assembled on 2003-02-27
GenBank Submission: BT004889
> RH24480.complete GCCTTAGTAGCATACATCGAAGGCAAACATATCGCAGCGCGAACGATCAA CGAATTAGCAAATAGAAATAGCCAATAGCTATAATAGAAAATAGAAATTA AATTGGGCAAACGCACGCGAATCGAACCGAATCAAATCGAAATTGAATAA AAAGAACAAAAAAAATAAATTCAATCGCCGTGTTTTGCCGAATCATTATT TTATTTCGAATTTTTCAACGATATCGATCCGAAGGATAAACGAAACGCGC TCCGATCTGCGAAATTGAGCGTAAAAAAACAAAAAAATCAGAGCCATAAA TCAAATAAAATCCAAGTCGAAGTCGTGGTGTTCCTCAGCAGCAGCAGACT CTCCAAATATCGAATTCAATTGATTGCACCTCGTTATTATATAACGCTCT TCTCGACTTTCGGCGAGCGGACAAGTCAAAAAATAGCCGCAAAAAAACAA ACATATACATCTTGGCATATAAGTGTATTTGTTATTTTTGATATCTATAC GAGAATATTTTTATTCTTACGCCAAGGCCCGATCGCCCATATAGATAGAT AGCCAAATAGATAGAGATACGCGAGTAGAGAGCAATATACATATAACCAT GGTCGCTCAGTGGAAAATCATCAACGAGAACTACAAAAATCTGGAGGGCT ACAAGCGTGTGGCCTGGCCACCGGCCTCCGAGGAGCGGATCATCCGGGAG TTCACCCCCCAGCCGCAGACTCAGAGTCCGGCTCCCGGTGCCGGAGGCTA CTATCCGCAGGCCCACGCTCCCACAGCAGCAGCTGCCGCTCCACCTCAGC CCCAGTTGCCCTACTCGCAGGATCAGACTGATCTGCAGCAGCAGCAACAA CAGCAGCAGCAGCAGTATCCGGGAGCCTACGCTGGCCAGGATAGCTACCG GGGCGCCAGTCCCGGCATCATCACCCTGCGCAAGGAGGCTCCAGTCAGCC AGAAGCCTGCACCAGTCTACACTTCGCAGCCAGCCGCCGTCAGTTATCAG GGAGGCAGCAAATTGCGCGGAGATTTGAAATGGCCACCACCGGAGTACAA GGAGGCCGCGGCTCGCGAGAACGAGGAACGACGCCAGTTGGCGTTGGGTC CCGTCTGCCGTCCCAGGAGAGTTAACCGGGACTACACACCCTTCTTTGCC AAGCACCAGTTGAACAATGGCTATCCCAGCTACAAGGTGCCTCCGGGCAC CCAGCACATTTTCGGCTAAGTTTGGGAAAGACTCTTTCAGATGCCAAGAA CAACAACAACAACAACAGCATAAAATTCAATGGAACCCACTTCATAATAA TACTGAAAACGATCAATGTCTATGTTACTAAAACGAAACACTAACGAATC AATCTATCTATATAGGATATATACAATTGTTATACTAAATCTTAAATGAC CACTAACGACGCCATATATACTATACATATATTACGAAACGAACCCATGT TAGGTGAATGCAATACTACAGCAGGTGTGACACCAACCGGTGAATCATCT TCAATATTATCCGTATAAATATAGATGCTCGCTGATTCCACGATCAGATT GCATCCACTCGAGATAATACTAATGATGATTCGTGGGCTTGGAACCCTGA TCCAAGCTGCCCAAACGGTGCAGCAATGGATAACGAAAATCTCCATGCAC CCATACTATATACACATATTTGGAGCATGTGCATATAGTATGGCTTAGAT TGGAGACCAGAACTATATGCTATATGCTATATAGTGCTAGATGCTAAGAT GATTGTTAAACTATTAACTAGCAAATGAAATGGAAACGATGCGACCCAAG ACGGAAAAATGATAATGAGATTGAACCTTGTCTTAGATGTAAGAGCAATA CTAAACTATTTATTGTGAGCATATTCTATTTAACGCAGATCCCGTGCAGC GATGAGCTCAAGGAATCCTCTGGGCGAACCACAATCACCAATTGTAAATT GTTCCCCGATATCGTGGCACATCCTTTGGAGCCGCTCGCACGGGTTTCTC AATGTTTATTGTTTGAGTTTGCATGCTTTTTGCTTATATCTATATTATAT GCACATATATATATATATATATATATATTTACCTTGAAATTGTTAAACTG CAAATTATAAAAAACCGTCAAATATCCCGCTATAAGTAAGTTATACAAGA AACCAGGCGACCGCGCCGAAACAAATCTGTGAGTTCGAAATATGTCATTC AAGGATATTAAATTCAACGCGCACGTTCGGATTATGCCACCCCTATAAGG CCCCATCAGTCCCCCTTCCAGCCGTCTGAGGTCGGCCCTTTAGTTCGCCC GCTGACCCCAGGCAATAATATGAGGATGCCTTTGCCTGCTGGACGAGCAG CCGCGGACTCAGGGCCCAGATCTTGGCGTATGGATGGGGGATGAGGCCGG GGCGAGATCGAGGACGGGCCAACACAACTCTCAGACTTTACCAATTACTA TGACCAGCAATGTCTATACGCAACTACACTACGATGTATAACTAATATGA AATGAGAAACTAAATAAACGGCAAGTTTTGAATACTCGCGACGAGAAGAA AAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG33205-RI | 2550 | CG33205-RI | 4..2550 | 3..2550 | 12700 | 99.9 | Plus |
CG33205.b | 3272 | CG33205.b | 1515..3267 | 797..2550 | 8730 | 99.9 | Plus |
CG33205-RH | 2800 | CG33205-RH | 1048..2800 | 797..2550 | 8730 | 99.9 | Plus |
CG33205.b | 3272 | CG33205.b | 1..797 | 3..799 | 3985 | 100 | Plus |
CG33205-RH | 2800 | CG33205-RH | 616..769 | 647..800 | 770 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 9824729..9826147 | 1129..2548 | 7005 | 99.7 | Plus |
chr3L | 24539361 | chr3L | 9821223..9821868 | 3..648 | 3170 | 99.4 | Plus |
chr3L | 24539361 | chr3L | 9824271..9824482 | 797..1002 | 935 | 97.2 | Plus |
chr3L | 24539361 | chr3L | 9822429..9822581 | 647..799 | 765 | 100 | Plus |
chr3L | 24539361 | chr3L | 9824540..9824669 | 1001..1130 | 650 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 9832927..9834347 | 1129..2550 | 7060 | 99.9 | Plus |
3L | 28110227 | 3L | 9829425..9830070 | 3..648 | 3230 | 100 | Plus |
3L | 28110227 | 3L | 9832475..9832680 | 797..1002 | 1030 | 100 | Plus |
3L | 28110227 | 3L | 9830633..9830785 | 647..799 | 765 | 100 | Plus |
3L | 28110227 | 3L | 9832738..9832867 | 1001..1130 | 650 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 9826027..9827447 | 1129..2550 | 7070 | 99.9 | Plus |
3L | 28103327 | 3L | 9822525..9823170 | 3..648 | 3230 | 100 | Plus |
3L | 28103327 | 3L | 9825575..9825780 | 797..1002 | 1030 | 100 | Plus |
3L | 28103327 | 3L | 9823733..9823885 | 647..799 | 765 | 100 | Plus |
3L | 28103327 | 3L | 9825838..9825967 | 1001..1130 | 650 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 3724..3806 | 2079..1996 | 120 | 61.9 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 9824541..9824668 | 1002..1129 | 100 | -> | Plus |
chr3L | 9824274..9824481 | 800..1001 | 85 | -> | Plus |
chr3L | 9821220..9821867 | 1..647 | 99 | -> | Plus |
chr3L | 9822430..9822581 | 648..799 | 100 | -> | Plus |
chr3L | 9824730..9826147 | 1130..2548 | 94 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33205-RI | 1..621 | 599..1219 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33205-RI | 1..621 | 599..1219 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG43897-RI | 1..621 | 599..1219 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33205-RI | 1..621 | 599..1219 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG43897-RI | 1..621 | 599..1219 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33205-RI | 2..2548 | 2..2548 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33205-RI | 2..2548 | 2..2548 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG43897-RI | 2..2548 | 2..2548 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33205-RI | 2..2548 | 2..2548 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG43897-RI | 2..2548 | 2..2548 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9829422..9830069 | 1..647 | 99 | -> | Plus |
3L | 9830634..9830785 | 648..799 | 100 | -> | Plus |
3L | 9832478..9832679 | 800..1001 | 100 | -> | Plus |
3L | 9832739..9832866 | 1002..1129 | 100 | -> | Plus |
3L | 9832928..9834345 | 1130..2548 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9829422..9830069 | 1..647 | 99 | -> | Plus |
3L | 9830634..9830785 | 648..799 | 100 | -> | Plus |
3L | 9832478..9832679 | 800..1001 | 100 | -> | Plus |
3L | 9832739..9832866 | 1002..1129 | 100 | -> | Plus |
3L | 9832928..9834345 | 1130..2548 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9829422..9830069 | 1..647 | 99 | -> | Plus |
3L | 9830634..9830785 | 648..799 | 100 | -> | Plus |
3L | 9832478..9832679 | 800..1001 | 100 | -> | Plus |
3L | 9832739..9832866 | 1002..1129 | 100 | -> | Plus |
3L | 9832928..9834345 | 1130..2548 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 9822522..9823169 | 1..647 | 99 | -> | Plus |
arm_3L | 9823734..9823885 | 648..799 | 100 | -> | Plus |
arm_3L | 9825578..9825779 | 800..1001 | 100 | -> | Plus |
arm_3L | 9825839..9825966 | 1002..1129 | 100 | -> | Plus |
arm_3L | 9826028..9827445 | 1130..2548 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9822522..9823169 | 1..647 | 99 | -> | Plus |
3L | 9823734..9823885 | 648..799 | 100 | -> | Plus |
3L | 9825578..9825779 | 800..1001 | 100 | -> | Plus |
3L | 9825839..9825966 | 1002..1129 | 100 | -> | Plus |
3L | 9826028..9827445 | 1130..2548 | 99 | Plus |
Translation from 598 to 1218
> RH24480.pep MVAQWKIINENYKNLEGYKRVAWPPASEERIIREFTPQPQTQSPAPGAGG YYPQAHAPTAAAAAPPQPQLPYSQDQTDLQQQQQQQQQQYPGAYAGQDSY RGASPGIITLRKEAPVSQKPAPVYTSQPAAVSYQGGSKLRGDLKWPPPEY KEAAARENEERRQLALGPVCRPRRVNRDYTPFFAKHQLNNGYPSYKVPPG TQHIFG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24680-PA | 467 | GF24680-PA | 353..466 | 92..205 | 572 | 93.9 | Plus |
Dana\GF24680-PA | 467 | GF24680-PA | 72..110 | 17..55 | 191 | 92.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15415-PA | 488 | GG15415-PA | 355..488 | 67..206 | 619 | 93.6 | Plus |
Dere\GG15415-PA | 488 | GG15415-PA | 72..111 | 17..56 | 203 | 95 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15437-PA | 490 | GH15437-PA | 373..490 | 72..206 | 548 | 80 | Plus |
Dgri\GH15437-PA | 490 | GH15437-PA | 1..62 | 1..60 | 266 | 82.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG43897-PI | 206 | CG43897-PI | 1..206 | 1..206 | 1116 | 100 | Plus |
CG43897-PQ | 299 | CG43897-PQ | 108..299 | 18..206 | 782 | 78.5 | Plus |
CG43897-PE | 315 | CG43897-PE | 124..315 | 18..206 | 782 | 78.5 | Plus |
CG43897-PG | 354 | CG43897-PG | 163..354 | 18..206 | 782 | 78.5 | Plus |
CG43897-PF | 354 | CG43897-PF | 163..354 | 18..206 | 782 | 78.5 | Plus |
CG43897-PH | 355 | CG43897-PH | 164..355 | 18..206 | 782 | 78.5 | Plus |
CG43897-PR | 446 | CG43897-PR | 255..446 | 18..206 | 782 | 78.5 | Plus |
CG43897-PA | 462 | CG43897-PA | 271..462 | 18..206 | 782 | 78.5 | Plus |
CG43897-PL | 500 | CG43897-PL | 309..500 | 18..206 | 782 | 78.5 | Plus |
CG43897-PJ | 501 | CG43897-PJ | 310..501 | 18..206 | 782 | 78.5 | Plus |
CG43897-PC | 501 | CG43897-PC | 310..501 | 18..206 | 782 | 78.5 | Plus |
CG43897-PB | 501 | CG43897-PB | 310..501 | 18..206 | 782 | 78.5 | Plus |
CG43897-PK | 502 | CG43897-PK | 311..502 | 18..206 | 782 | 78.5 | Plus |
CG43897-PN | 1339 | CG43897-PN | 1148..1339 | 18..206 | 782 | 78.5 | Plus |
CG43897-PM | 1385 | CG43897-PM | 1194..1385 | 18..206 | 782 | 78.5 | Plus |
CG43897-PQ | 299 | CG43897-PQ | 1..129 | 1..128 | 413 | 65.7 | Plus |
CG43897-PR | 446 | CG43897-PR | 1..230 | 1..202 | 397 | 44.1 | Plus |
CG43897-PO | 215 | CG43897-PO | 1..156 | 1..134 | 396 | 56.4 | Plus |
CG43897-PM | 1385 | CG43897-PM | 1098..1215 | 12..128 | 339 | 60.2 | Plus |
CG43897-PN | 1339 | CG43897-PN | 1053..1169 | 12..128 | 332 | 59.8 | Plus |
CG43897-PE | 315 | CG43897-PE | 33..145 | 17..128 | 327 | 61 | Plus |
CG43897-PG | 354 | CG43897-PG | 72..184 | 17..128 | 327 | 61 | Plus |
CG43897-PF | 354 | CG43897-PF | 72..184 | 17..128 | 327 | 61 | Plus |
CG43897-PH | 355 | CG43897-PH | 72..185 | 17..128 | 325 | 60.5 | Plus |
CG43897-PL | 500 | CG43897-PL | 72..284 | 17..202 | 312 | 40.4 | Plus |
CG43897-PA | 462 | CG43897-PA | 33..246 | 17..202 | 311 | 40.3 | Plus |
CG43897-PJ | 501 | CG43897-PJ | 72..285 | 17..202 | 311 | 40.3 | Plus |
CG43897-PC | 501 | CG43897-PC | 72..285 | 17..202 | 311 | 40.3 | Plus |
CG43897-PB | 501 | CG43897-PB | 72..285 | 17..202 | 311 | 40.3 | Plus |
CG43897-PK | 502 | CG43897-PK | 72..211 | 17..134 | 310 | 51.7 | Plus |
CG43897-PP | 123 | CG43897-PP | 72..122 | 17..67 | 279 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13037-PA | 1629 | GI13037-PA | 1487..1628 | 47..206 | 563 | 71.9 | Plus |
Dmoj\GI13037-PA | 1629 | GI13037-PA | 1200..1240 | 12..52 | 203 | 87.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16300-PA | 464 | GL16300-PA | 348..464 | 91..206 | 550 | 90.6 | Plus |
Dper\GL16300-PA | 464 | GL16300-PA | 1..62 | 1..65 | 285 | 89.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA23436-PA | 464 | GA23436-PA | 348..463 | 91..205 | 546 | 90.5 | Plus |
Dpse\GA23436-PA | 464 | GA23436-PA | 1..62 | 1..65 | 285 | 89.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25188-PA | 496 | GM25188-PA | 354..496 | 67..206 | 659 | 97.2 | Plus |
Dsec\GM25188-PA | 496 | GM25188-PA | 72..107 | 17..52 | 188 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14220-PA | 1212 | GD14220-PA | 1098..1212 | 92..206 | 621 | 100 | Plus |
Dsim\GD13148-PA | 93 | GD13148-PA | 1..67 | 1..67 | 338 | 97 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12133-PA | 377 | GJ12133-PA | 259..376 | 72..206 | 567 | 83 | Plus |
Dvir\GJ12133-PA | 377 | GJ12133-PA | 1..55 | 1..55 | 259 | 83.6 | Plus |
Translation from 598 to 1218
> RH24480.hyp MVAQWKIINENYKNLEGYKRVAWPPASEERIIREFTPQPQTQSPAPGAGG YYPQAHAPTAAAAAPPQPQLPYSQDQTDLQQQQQQQQQQYPGAYAGQDSY RGASPGIITLRKEAPVSQKPAPVYTSQPAAVSYQGGSKLRGDLKWPPPEY KEAAARENEERRQLALGPVCRPRRVNRDYTPFFAKHQLNNGYPSYKVPPG TQHIFG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG43897-PI | 206 | CG43897-PI | 1..206 | 1..206 | 1116 | 100 | Plus |
CG43897-PQ | 299 | CG43897-PQ | 108..299 | 18..206 | 782 | 78.5 | Plus |
CG43897-PE | 315 | CG43897-PE | 124..315 | 18..206 | 782 | 78.5 | Plus |
CG43897-PG | 354 | CG43897-PG | 163..354 | 18..206 | 782 | 78.5 | Plus |
CG43897-PF | 354 | CG43897-PF | 163..354 | 18..206 | 782 | 78.5 | Plus |
CG43897-PQ | 299 | CG43897-PQ | 1..129 | 1..128 | 413 | 65.7 | Plus |
CG43897-PE | 315 | CG43897-PE | 33..145 | 17..128 | 327 | 61 | Plus |
CG43897-PG | 354 | CG43897-PG | 72..184 | 17..128 | 327 | 61 | Plus |