Clone RH24480 Report

Search the DGRC for RH24480

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:244
Well:80
Vector:pFlc-1
Associated Gene/TranscriptCG43897-RI
Protein status:RH24480.pep: gold
Preliminary Size:1726
Sequenced Size:2564

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG33205 2003-02-27 Blastp of sequenced clone
CG33205 2008-04-29 Release 5.5 accounting
CG33205 2008-08-15 Release 5.9 accounting
CG33205 2008-12-18 5.12 accounting

Clone Sequence Records

RH24480.complete Sequence

2564 bp (2564 high quality bases) assembled on 2003-02-27

GenBank Submission: BT004889

> RH24480.complete
GCCTTAGTAGCATACATCGAAGGCAAACATATCGCAGCGCGAACGATCAA
CGAATTAGCAAATAGAAATAGCCAATAGCTATAATAGAAAATAGAAATTA
AATTGGGCAAACGCACGCGAATCGAACCGAATCAAATCGAAATTGAATAA
AAAGAACAAAAAAAATAAATTCAATCGCCGTGTTTTGCCGAATCATTATT
TTATTTCGAATTTTTCAACGATATCGATCCGAAGGATAAACGAAACGCGC
TCCGATCTGCGAAATTGAGCGTAAAAAAACAAAAAAATCAGAGCCATAAA
TCAAATAAAATCCAAGTCGAAGTCGTGGTGTTCCTCAGCAGCAGCAGACT
CTCCAAATATCGAATTCAATTGATTGCACCTCGTTATTATATAACGCTCT
TCTCGACTTTCGGCGAGCGGACAAGTCAAAAAATAGCCGCAAAAAAACAA
ACATATACATCTTGGCATATAAGTGTATTTGTTATTTTTGATATCTATAC
GAGAATATTTTTATTCTTACGCCAAGGCCCGATCGCCCATATAGATAGAT
AGCCAAATAGATAGAGATACGCGAGTAGAGAGCAATATACATATAACCAT
GGTCGCTCAGTGGAAAATCATCAACGAGAACTACAAAAATCTGGAGGGCT
ACAAGCGTGTGGCCTGGCCACCGGCCTCCGAGGAGCGGATCATCCGGGAG
TTCACCCCCCAGCCGCAGACTCAGAGTCCGGCTCCCGGTGCCGGAGGCTA
CTATCCGCAGGCCCACGCTCCCACAGCAGCAGCTGCCGCTCCACCTCAGC
CCCAGTTGCCCTACTCGCAGGATCAGACTGATCTGCAGCAGCAGCAACAA
CAGCAGCAGCAGCAGTATCCGGGAGCCTACGCTGGCCAGGATAGCTACCG
GGGCGCCAGTCCCGGCATCATCACCCTGCGCAAGGAGGCTCCAGTCAGCC
AGAAGCCTGCACCAGTCTACACTTCGCAGCCAGCCGCCGTCAGTTATCAG
GGAGGCAGCAAATTGCGCGGAGATTTGAAATGGCCACCACCGGAGTACAA
GGAGGCCGCGGCTCGCGAGAACGAGGAACGACGCCAGTTGGCGTTGGGTC
CCGTCTGCCGTCCCAGGAGAGTTAACCGGGACTACACACCCTTCTTTGCC
AAGCACCAGTTGAACAATGGCTATCCCAGCTACAAGGTGCCTCCGGGCAC
CCAGCACATTTTCGGCTAAGTTTGGGAAAGACTCTTTCAGATGCCAAGAA
CAACAACAACAACAACAGCATAAAATTCAATGGAACCCACTTCATAATAA
TACTGAAAACGATCAATGTCTATGTTACTAAAACGAAACACTAACGAATC
AATCTATCTATATAGGATATATACAATTGTTATACTAAATCTTAAATGAC
CACTAACGACGCCATATATACTATACATATATTACGAAACGAACCCATGT
TAGGTGAATGCAATACTACAGCAGGTGTGACACCAACCGGTGAATCATCT
TCAATATTATCCGTATAAATATAGATGCTCGCTGATTCCACGATCAGATT
GCATCCACTCGAGATAATACTAATGATGATTCGTGGGCTTGGAACCCTGA
TCCAAGCTGCCCAAACGGTGCAGCAATGGATAACGAAAATCTCCATGCAC
CCATACTATATACACATATTTGGAGCATGTGCATATAGTATGGCTTAGAT
TGGAGACCAGAACTATATGCTATATGCTATATAGTGCTAGATGCTAAGAT
GATTGTTAAACTATTAACTAGCAAATGAAATGGAAACGATGCGACCCAAG
ACGGAAAAATGATAATGAGATTGAACCTTGTCTTAGATGTAAGAGCAATA
CTAAACTATTTATTGTGAGCATATTCTATTTAACGCAGATCCCGTGCAGC
GATGAGCTCAAGGAATCCTCTGGGCGAACCACAATCACCAATTGTAAATT
GTTCCCCGATATCGTGGCACATCCTTTGGAGCCGCTCGCACGGGTTTCTC
AATGTTTATTGTTTGAGTTTGCATGCTTTTTGCTTATATCTATATTATAT
GCACATATATATATATATATATATATATTTACCTTGAAATTGTTAAACTG
CAAATTATAAAAAACCGTCAAATATCCCGCTATAAGTAAGTTATACAAGA
AACCAGGCGACCGCGCCGAAACAAATCTGTGAGTTCGAAATATGTCATTC
AAGGATATTAAATTCAACGCGCACGTTCGGATTATGCCACCCCTATAAGG
CCCCATCAGTCCCCCTTCCAGCCGTCTGAGGTCGGCCCTTTAGTTCGCCC
GCTGACCCCAGGCAATAATATGAGGATGCCTTTGCCTGCTGGACGAGCAG
CCGCGGACTCAGGGCCCAGATCTTGGCGTATGGATGGGGGATGAGGCCGG
GGCGAGATCGAGGACGGGCCAACACAACTCTCAGACTTTACCAATTACTA
TGACCAGCAATGTCTATACGCAACTACACTACGATGTATAACTAATATGA
AATGAGAAACTAAATAAACGGCAAGTTTTGAATACTCGCGACGAGAAGAA
AAAAAAAAAAAAAA

RH24480.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:16:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG33205-RI 2550 CG33205-RI 4..2550 3..2550 12700 99.9 Plus
CG33205.b 3272 CG33205.b 1515..3267 797..2550 8730 99.9 Plus
CG33205-RH 2800 CG33205-RH 1048..2800 797..2550 8730 99.9 Plus
CG33205.b 3272 CG33205.b 1..797 3..799 3985 100 Plus
CG33205-RH 2800 CG33205-RH 616..769 647..800 770 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:24:59
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 9824729..9826147 1129..2548 7005 99.7 Plus
chr3L 24539361 chr3L 9821223..9821868 3..648 3170 99.4 Plus
chr3L 24539361 chr3L 9824271..9824482 797..1002 935 97.2 Plus
chr3L 24539361 chr3L 9822429..9822581 647..799 765 100 Plus
chr3L 24539361 chr3L 9824540..9824669 1001..1130 650 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:25:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:24:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9832927..9834347 1129..2550 7060 99.9 Plus
3L 28110227 3L 9829425..9830070 3..648 3230 100 Plus
3L 28110227 3L 9832475..9832680 797..1002 1030 100 Plus
3L 28110227 3L 9830633..9830785 647..799 765 100 Plus
3L 28110227 3L 9832738..9832867 1001..1130 650 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 9826027..9827447 1129..2550 7070 99.9 Plus
3L 28103327 3L 9822525..9823170 3..648 3230 100 Plus
3L 28103327 3L 9825575..9825780 797..1002 1030 100 Plus
3L 28103327 3L 9823733..9823885 647..799 765 100 Plus
3L 28103327 3L 9825838..9825967 1001..1130 650 100 Plus
Blast to na_te.dros performed 2019-03-16 14:24:58
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy11 4428 gypsy11 GYPSY11 4428bp 3724..3806 2079..1996 120 61.9 Minus

RH24480.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:25:50 Download gff for RH24480.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 9824541..9824668 1002..1129 100 -> Plus
chr3L 9824274..9824481 800..1001 85 -> Plus
chr3L 9821220..9821867 1..647 99 -> Plus
chr3L 9822430..9822581 648..799 100 -> Plus
chr3L 9824730..9826147 1130..2548 94   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:43:43 Download gff for RH24480.complete
Subject Subject Range Query Range Percent Splice Strand
CG33205-RI 1..621 599..1219 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:46:56 Download gff for RH24480.complete
Subject Subject Range Query Range Percent Splice Strand
CG33205-RI 1..621 599..1219 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:49:32 Download gff for RH24480.complete
Subject Subject Range Query Range Percent Splice Strand
CG43897-RI 1..621 599..1219 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:38:22 Download gff for RH24480.complete
Subject Subject Range Query Range Percent Splice Strand
CG33205-RI 1..621 599..1219 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:27:35 Download gff for RH24480.complete
Subject Subject Range Query Range Percent Splice Strand
CG43897-RI 1..621 599..1219 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:58:37 Download gff for RH24480.complete
Subject Subject Range Query Range Percent Splice Strand
CG33205-RI 2..2548 2..2548 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:46:56 Download gff for RH24480.complete
Subject Subject Range Query Range Percent Splice Strand
CG33205-RI 2..2548 2..2548 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:49:32 Download gff for RH24480.complete
Subject Subject Range Query Range Percent Splice Strand
CG43897-RI 2..2548 2..2548 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:38:22 Download gff for RH24480.complete
Subject Subject Range Query Range Percent Splice Strand
CG33205-RI 2..2548 2..2548 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:27:35 Download gff for RH24480.complete
Subject Subject Range Query Range Percent Splice Strand
CG43897-RI 2..2548 2..2548 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:25:50 Download gff for RH24480.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9829422..9830069 1..647 99 -> Plus
3L 9830634..9830785 648..799 100 -> Plus
3L 9832478..9832679 800..1001 100 -> Plus
3L 9832739..9832866 1002..1129 100 -> Plus
3L 9832928..9834345 1130..2548 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:25:50 Download gff for RH24480.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9829422..9830069 1..647 99 -> Plus
3L 9830634..9830785 648..799 100 -> Plus
3L 9832478..9832679 800..1001 100 -> Plus
3L 9832739..9832866 1002..1129 100 -> Plus
3L 9832928..9834345 1130..2548 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:25:50 Download gff for RH24480.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9829422..9830069 1..647 99 -> Plus
3L 9830634..9830785 648..799 100 -> Plus
3L 9832478..9832679 800..1001 100 -> Plus
3L 9832739..9832866 1002..1129 100 -> Plus
3L 9832928..9834345 1130..2548 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:49:32 Download gff for RH24480.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9822522..9823169 1..647 99 -> Plus
arm_3L 9823734..9823885 648..799 100 -> Plus
arm_3L 9825578..9825779 800..1001 100 -> Plus
arm_3L 9825839..9825966 1002..1129 100 -> Plus
arm_3L 9826028..9827445 1130..2548 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:08:38 Download gff for RH24480.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9822522..9823169 1..647 99 -> Plus
3L 9823734..9823885 648..799 100 -> Plus
3L 9825578..9825779 800..1001 100 -> Plus
3L 9825839..9825966 1002..1129 100 -> Plus
3L 9826028..9827445 1130..2548 99   Plus

RH24480.pep Sequence

Translation from 598 to 1218

> RH24480.pep
MVAQWKIINENYKNLEGYKRVAWPPASEERIIREFTPQPQTQSPAPGAGG
YYPQAHAPTAAAAAPPQPQLPYSQDQTDLQQQQQQQQQQYPGAYAGQDSY
RGASPGIITLRKEAPVSQKPAPVYTSQPAAVSYQGGSKLRGDLKWPPPEY
KEAAARENEERRQLALGPVCRPRRVNRDYTPFFAKHQLNNGYPSYKVPPG
TQHIFG*

RH24480.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:52:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24680-PA 467 GF24680-PA 353..466 92..205 572 93.9 Plus
Dana\GF24680-PA 467 GF24680-PA 72..110 17..55 191 92.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:52:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15415-PA 488 GG15415-PA 355..488 67..206 619 93.6 Plus
Dere\GG15415-PA 488 GG15415-PA 72..111 17..56 203 95 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:52:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15437-PA 490 GH15437-PA 373..490 72..206 548 80 Plus
Dgri\GH15437-PA 490 GH15437-PA 1..62 1..60 266 82.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG43897-PI 206 CG43897-PI 1..206 1..206 1116 100 Plus
CG43897-PQ 299 CG43897-PQ 108..299 18..206 782 78.5 Plus
CG43897-PE 315 CG43897-PE 124..315 18..206 782 78.5 Plus
CG43897-PG 354 CG43897-PG 163..354 18..206 782 78.5 Plus
CG43897-PF 354 CG43897-PF 163..354 18..206 782 78.5 Plus
CG43897-PH 355 CG43897-PH 164..355 18..206 782 78.5 Plus
CG43897-PR 446 CG43897-PR 255..446 18..206 782 78.5 Plus
CG43897-PA 462 CG43897-PA 271..462 18..206 782 78.5 Plus
CG43897-PL 500 CG43897-PL 309..500 18..206 782 78.5 Plus
CG43897-PJ 501 CG43897-PJ 310..501 18..206 782 78.5 Plus
CG43897-PC 501 CG43897-PC 310..501 18..206 782 78.5 Plus
CG43897-PB 501 CG43897-PB 310..501 18..206 782 78.5 Plus
CG43897-PK 502 CG43897-PK 311..502 18..206 782 78.5 Plus
CG43897-PN 1339 CG43897-PN 1148..1339 18..206 782 78.5 Plus
CG43897-PM 1385 CG43897-PM 1194..1385 18..206 782 78.5 Plus
CG43897-PQ 299 CG43897-PQ 1..129 1..128 413 65.7 Plus
CG43897-PR 446 CG43897-PR 1..230 1..202 397 44.1 Plus
CG43897-PO 215 CG43897-PO 1..156 1..134 396 56.4 Plus
CG43897-PM 1385 CG43897-PM 1098..1215 12..128 339 60.2 Plus
CG43897-PN 1339 CG43897-PN 1053..1169 12..128 332 59.8 Plus
CG43897-PE 315 CG43897-PE 33..145 17..128 327 61 Plus
CG43897-PG 354 CG43897-PG 72..184 17..128 327 61 Plus
CG43897-PF 354 CG43897-PF 72..184 17..128 327 61 Plus
CG43897-PH 355 CG43897-PH 72..185 17..128 325 60.5 Plus
CG43897-PL 500 CG43897-PL 72..284 17..202 312 40.4 Plus
CG43897-PA 462 CG43897-PA 33..246 17..202 311 40.3 Plus
CG43897-PJ 501 CG43897-PJ 72..285 17..202 311 40.3 Plus
CG43897-PC 501 CG43897-PC 72..285 17..202 311 40.3 Plus
CG43897-PB 501 CG43897-PB 72..285 17..202 311 40.3 Plus
CG43897-PK 502 CG43897-PK 72..211 17..134 310 51.7 Plus
CG43897-PP 123 CG43897-PP 72..122 17..67 279 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:52:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13037-PA 1629 GI13037-PA 1487..1628 47..206 563 71.9 Plus
Dmoj\GI13037-PA 1629 GI13037-PA 1200..1240 12..52 203 87.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:52:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16300-PA 464 GL16300-PA 348..464 91..206 550 90.6 Plus
Dper\GL16300-PA 464 GL16300-PA 1..62 1..65 285 89.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:52:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23436-PA 464 GA23436-PA 348..463 91..205 546 90.5 Plus
Dpse\GA23436-PA 464 GA23436-PA 1..62 1..65 285 89.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:52:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25188-PA 496 GM25188-PA 354..496 67..206 659 97.2 Plus
Dsec\GM25188-PA 496 GM25188-PA 72..107 17..52 188 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:52:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14220-PA 1212 GD14220-PA 1098..1212 92..206 621 100 Plus
Dsim\GD13148-PA 93 GD13148-PA 1..67 1..67 338 97 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:52:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12133-PA 377 GJ12133-PA 259..376 72..206 567 83 Plus
Dvir\GJ12133-PA 377 GJ12133-PA 1..55 1..55 259 83.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:52:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11012-PA 467 GK11012-PA 355..466 94..205 567 94.6 Plus
Dwil\GK11012-PA 467 GK11012-PA 1..62 1..65 271 84.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:52:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21723-PA 500 GE21723-PA 363..500 67..206 619 95.7 Plus
Dyak\GE21723-PA 500 GE21723-PA 72..110 17..55 200 100 Plus

RH24480.hyp Sequence

Translation from 598 to 1218

> RH24480.hyp
MVAQWKIINENYKNLEGYKRVAWPPASEERIIREFTPQPQTQSPAPGAGG
YYPQAHAPTAAAAAPPQPQLPYSQDQTDLQQQQQQQQQQYPGAYAGQDSY
RGASPGIITLRKEAPVSQKPAPVYTSQPAAVSYQGGSKLRGDLKWPPPEY
KEAAARENEERRQLALGPVCRPRRVNRDYTPFFAKHQLNNGYPSYKVPPG
TQHIFG*

RH24480.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:40:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG43897-PI 206 CG43897-PI 1..206 1..206 1116 100 Plus
CG43897-PQ 299 CG43897-PQ 108..299 18..206 782 78.5 Plus
CG43897-PE 315 CG43897-PE 124..315 18..206 782 78.5 Plus
CG43897-PG 354 CG43897-PG 163..354 18..206 782 78.5 Plus
CG43897-PF 354 CG43897-PF 163..354 18..206 782 78.5 Plus
CG43897-PQ 299 CG43897-PQ 1..129 1..128 413 65.7 Plus
CG43897-PE 315 CG43897-PE 33..145 17..128 327 61 Plus
CG43897-PG 354 CG43897-PG 72..184 17..128 327 61 Plus