RH24988.complete Sequence
970 bp (970 high quality bases) assembled on 2001-12-17
GenBank Submission: AY071711
> RH24988.complete
GATCAGTGATCGGTGAGCCGAGTTAGCAGCCAGACGCATTCCTTCTCCAG
TCTTGCAAGTAACCCGAAAATCAAACCATCAACATGAAAGCCGTGATCTT
TGTGCTCGCCGTCGTGGTAGCCATGGCCGGAAAAGCCCACGCCGCATGCT
CCGCCGTTCCTCAATATACGGAAAAGATCGATCCTGTCAATTGCCCACAG
TCAGGATTCAAGTTGCCCAACTATGAGAACGCCTCCGTGTACTACCAGTG
CACCGCACAGTTACAGTCCGATGGCAGCATAGTGGTGACTGGCGTCTTGA
CCAGCTGCGGTGAAGACACCTACTTCAACTATGCCTTGCAGAGATGCGTG
GCCTGCGCCAATTACTTCCCAAGCGCCCAGTGCAGCAGTCTGCCCATCAA
TGTGACCTGTGTGCCCATCTCCACCGTTACCACTGTGGCCCCCACAACCG
GAACCACCATTGCTCCCACCACCGCGTCCCCCACTACCGCTGCTTCCACC
ACTGCGGCACCTGGCGAGTCCACCACTGCAGCACCTGGCGAGTCTACCAC
CGTCACGGTGCCCGTACCACCAACTGAAGCTCCTGGCAGCACCACGGCCT
CCGGCAGTGACGACATCATTACCCCGACTGGTACCACCATCTCCGTGCCC
CAGCCCCCCTCACCCAGTGACAGCAACGTGCCCACTCCGGTGACGCCCGC
GCCCACAGCTCCTGTCATCAACGACGGTCCTCCGACCGCACCTTCGGCTG
CCACCAAATAAGTCCTCGAGTTGATTCTATCCAAAACCCCAGATTTTGTG
GCTGAATAAAGTGTTGGCGCACACACACACACACATTATGAAAAGGAAAT
AATTTTTAGTTTTTAACAGCACCATAATAAGTTTGATTACAAGAAAATCT
GATTGTAAGCTATCAACGATAAAAACGCATAGACATATATAACTGTTTTT
TGCCATAAAAAAAAAAAAAA
RH24988.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:35:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7714-RA | 1210 | CG7714-RA | 213..1170 | 2..959 | 4775 | 99.8 | Plus |
nc_17625.a | 624 | nc_17625.a | 1..436 | 954..519 | 2165 | 99.7 | Minus |
nc_17625.a | 624 | nc_17625.a | 405..624 | 526..307 | 1085 | 99.5 | Minus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:23:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 14549498..14550360 | 955..93 | 4285 | 99.8 | Minus |
chr3R | 27901430 | chr3R | 14550443..14550534 | 93..2 | 460 | 100 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:25:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:23:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18725394..18726260 | 959..93 | 4320 | 99.9 | Minus |
3R | 32079331 | 3R | 18726343..18726434 | 93..2 | 460 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:03:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 18466225..18467091 | 959..93 | 4320 | 99.8 | Minus |
3R | 31820162 | 3R | 18467174..18467265 | 93..2 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2019-03-16 07:23:17 has no hits.
RH24988.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:24:05 Download gff for
RH24988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 14549497..14550359 | 94..956 | 99 | <- | Minus |
chr3R | 14550443..14550534 | 1..93 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:43:48 Download gff for
RH24988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7714-RA | 1..678 | 84..761 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:58:09 Download gff for
RH24988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7714-RA | 1..678 | 84..761 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:44:39 Download gff for
RH24988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7714-RA | 1..678 | 84..761 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:22:53 Download gff for
RH24988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7714-RA | 1..678 | 84..761 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:30:55 Download gff for
RH24988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7714-RA | 1..678 | 84..761 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:23:04 Download gff for
RH24988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7714-RA | 1..954 | 2..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:58:08 Download gff for
RH24988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7714-RA | 1..954 | 2..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:44:39 Download gff for
RH24988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7714-RA | 1..954 | 2..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:22:53 Download gff for
RH24988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7714-RA | 1..954 | 2..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:30:55 Download gff for
RH24988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7714-RA | 1..953 | 2..954 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:24:05 Download gff for
RH24988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18726343..18726434 | 1..93 | 98 | | Minus |
3R | 18725397..18726259 | 94..956 | 99 | <- | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:24:05 Download gff for
RH24988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18726343..18726434 | 1..93 | 98 | | Minus |
3R | 18725397..18726259 | 94..956 | 99 | <- | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:24:05 Download gff for
RH24988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18726343..18726434 | 1..93 | 98 | | Minus |
3R | 18725397..18726259 | 94..956 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:44:39 Download gff for
RH24988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14551119..14551981 | 94..956 | 99 | <- | Minus |
arm_3R | 14552065..14552156 | 1..93 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:57:54 Download gff for
RH24988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18466228..18467090 | 94..956 | 99 | <- | Minus |
3R | 18467174..18467265 | 1..93 | 98 | | Minus |
RH24988.pep Sequence
Translation from 83 to 760
> RH24988.pep
MKAVIFVLAVVVAMAGKAHAACSAVPQYTEKIDPVNCPQSGFKLPNYENA
SVYYQCTAQLQSDGSIVVTGVLTSCGEDTYFNYALQRCVACANYFPSAQC
SSLPINVTCVPISTVTTVAPTTGTTIAPTTASPTTAASTTAAPGESTTAA
PGESTTVTVPVPPTEAPGSTTASGSDDIITPTGTTISVPQPPSPSDSNVP
TPVTPAPTAPVINDGPPTAPSAATK*
RH24988.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:04:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF17868-PA | 219 | GF17868-PA | 1..214 | 1..224 | 343 | 44.2 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:04:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG16348-PA | 299 | GG16348-PA | 1..294 | 1..221 | 671 | 53.7 | Plus |
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:04:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dgri\GH22098-PA | 196 | GH22098-PA | 1..196 | 1..217 | 204 | 38.7 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:23:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7714-PA | 225 | CG7714-PA | 1..225 | 1..225 | 1172 | 100 | Plus |
CG34220-PA | 726 | CG34220-PA | 142..261 | 108..223 | 170 | 36.2 | Plus |
CG34220-PA | 726 | CG34220-PA | 317..434 | 108..224 | 170 | 35.2 | Plus |
Muc55B-PB | 485 | CG5765-PB | 127..338 | 47..222 | 168 | 34 | Plus |
Muc55B-PA | 485 | CG5765-PA | 127..338 | 47..222 | 168 | 34 | Plus |
Muc26B-PA | 471 | CG13990-PA | 130..280 | 56..208 | 161 | 32.7 | Plus |
CG34220-PA | 726 | CG34220-PA | 133..241 | 108..218 | 160 | 35.1 | Plus |
CG34220-PA | 726 | CG34220-PA | 430..532 | 111..224 | 160 | 35.9 | Plus |
Muc26B-PA | 471 | CG13990-PA | 155..288 | 73..208 | 160 | 35.3 | Plus |
Muc26B-PA | 471 | CG13990-PA | 163..296 | 73..208 | 160 | 35.3 | Plus |
Muc26B-PA | 471 | CG13990-PA | 171..304 | 73..208 | 160 | 35.3 | Plus |
Muc26B-PA | 471 | CG13990-PA | 179..312 | 73..208 | 160 | 35.3 | Plus |
Muc26B-PA | 471 | CG13990-PA | 187..320 | 73..208 | 160 | 35.3 | Plus |
Muc26B-PA | 471 | CG13990-PA | 195..355 | 73..224 | 160 | 32.3 | Plus |
CG34220-PA | 726 | CG34220-PA | 275..413 | 96..223 | 158 | 31.7 | Plus |
Muc55B-PB | 485 | CG5765-PB | 253..380 | 96..222 | 158 | 37.8 | Plus |
Muc55B-PB | 485 | CG5765-PB | 258..394 | 96..222 | 158 | 37.3 | Plus |
Muc55B-PA | 485 | CG5765-PA | 253..380 | 96..222 | 158 | 37.8 | Plus |
Muc55B-PA | 485 | CG5765-PA | 258..394 | 96..222 | 158 | 37.3 | Plus |
Muc55B-PB | 485 | CG5765-PB | 304..424 | 107..224 | 157 | 38.9 | Plus |
Muc55B-PA | 485 | CG5765-PA | 304..424 | 107..224 | 157 | 38.9 | Plus |
Muc26B-PA | 471 | CG13990-PA | 124..264 | 66..208 | 157 | 34.2 | Plus |
Muc4B-PC | 496 | CG32774-PC | 217..341 | 104..224 | 157 | 34.6 | Plus |
Muc4B-PB | 496 | CG32774-PB | 217..341 | 104..224 | 157 | 34.6 | Plus |
Mur89F-PC | 2158 | CG4090-PC | 1335..1510 | 37..218 | 157 | 26.9 | Plus |
Mur89F-PB | 2159 | CG4090-PB | 1335..1510 | 37..218 | 157 | 26.9 | Plus |
CG34220-PA | 726 | CG34220-PA | 6..229 | 5..221 | 156 | 26.3 | Plus |
Muc26B-PA | 471 | CG13990-PA | 87..240 | 46..208 | 156 | 33.5 | Plus |
Mur82C-PB | 578 | CG12586-PB | 198..306 | 107..224 | 156 | 33.1 | Plus |
Muc55B-PB | 485 | CG5765-PB | 290..408 | 107..222 | 155 | 39.5 | Plus |
Muc55B-PA | 485 | CG5765-PA | 290..408 | 107..222 | 155 | 39.5 | Plus |
Muc26B-PA | 471 | CG13990-PA | 219..370 | 73..225 | 154 | 32.9 | Plus |
CG46026-PA | 666 | CG46026-PA | 554..666 | 108..224 | 154 | 32.8 | Plus |
CG46026-PA | 666 | CG46026-PA | 482..598 | 104..224 | 152 | 30.6 | Plus |
Mur89F-PC | 2158 | CG4090-PC | 1806..1973 | 36..224 | 151 | 31.1 | Plus |
Mur89F-PB | 2159 | CG4090-PB | 1806..1973 | 36..224 | 151 | 31.1 | Plus |
CG46026-PA | 666 | CG46026-PA | 282..395 | 108..225 | 151 | 29.7 | Plus |
Muc26B-PA | 471 | CG13990-PA | 259..402 | 73..222 | 150 | 33.3 | Plus |
Sgs1-PA | 1286 | CG3047-PA | 519..643 | 100..224 | 149 | 31.3 | Plus |
Muc55B-PB | 485 | CG5765-PB | 318..438 | 107..221 | 148 | 38.9 | Plus |
Muc55B-PA | 485 | CG5765-PA | 318..438 | 107..221 | 148 | 38.9 | Plus |
Muc96D-PA | 881 | CG31439-PA | 354..470 | 108..224 | 148 | 29.9 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:04:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI21958-PA | 210 | GI21958-PA | 1..210 | 1..220 | 271 | 40.4 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:04:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL23110-PA | 449 | GL23110-PA | 233..446 | 4..222 | 445 | 57.1 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:04:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA20537-PA | 233 | GA20537-PA | 1..226 | 1..218 | 431 | 53.4 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:04:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM18687-PA | 86 | GM18687-PA | 1..79 | 1..81 | 267 | 64.2 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:04:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ14317-PA | 207 | GJ14317-PA | 1..175 | 1..189 | 182 | 36.1 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:05:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE25177-PA | 212 | GE25177-PA | 1..212 | 1..225 | 590 | 59.3 | Plus |
RH24988.hyp Sequence
Translation from 83 to 760
> RH24988.hyp
MKAVIFVLAVVVAMAGKAHAACSAVPQYTEKIDPVNCPQSGFKLPNYENA
SVYYQCTAQLQSDGSIVVTGVLTSCGEDTYFNYALQRCVACANYFPSAQC
SSLPINVTCVPISTVTTVAPTTGTTIAPTTASPTTAASTTAAPGESTTAA
PGESTTVTVPVPPTEAPGSTTASGSDDIITPTGTTISVPQPPSPSDSNVP
TPVTPAPTAPVINDGPPTAPSAATK*
RH24988.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:53:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7714-PA | 225 | CG7714-PA | 1..225 | 1..225 | 1172 | 100 | Plus |
CG34220-PA | 726 | CG34220-PA | 142..261 | 108..223 | 170 | 36.2 | Plus |
CG34220-PA | 726 | CG34220-PA | 317..434 | 108..224 | 170 | 35.2 | Plus |
Muc55B-PB | 485 | CG5765-PB | 127..338 | 47..222 | 168 | 34 | Plus |
Muc55B-PA | 485 | CG5765-PA | 127..338 | 47..222 | 168 | 34 | Plus |
Muc26B-PA | 471 | CG13990-PA | 130..280 | 56..208 | 161 | 32.7 | Plus |
CG34220-PA | 726 | CG34220-PA | 133..241 | 108..218 | 160 | 35.1 | Plus |
CG34220-PA | 726 | CG34220-PA | 430..532 | 111..224 | 160 | 35.9 | Plus |
CG34220-PA | 726 | CG34220-PA | 275..413 | 96..223 | 158 | 31.7 | Plus |
Muc55B-PB | 485 | CG5765-PB | 253..380 | 96..222 | 158 | 37.8 | Plus |
Muc55B-PB | 485 | CG5765-PB | 258..394 | 96..222 | 158 | 37.3 | Plus |
Muc55B-PA | 485 | CG5765-PA | 258..394 | 96..222 | 158 | 37.3 | Plus |
Muc55B-PA | 485 | CG5765-PA | 253..380 | 96..222 | 158 | 37.8 | Plus |
Muc55B-PB | 485 | CG5765-PB | 304..424 | 107..224 | 157 | 38.9 | Plus |
Muc55B-PA | 485 | CG5765-PA | 304..424 | 107..224 | 157 | 38.9 | Plus |
CG34220-PA | 726 | CG34220-PA | 6..229 | 5..221 | 156 | 26.3 | Plus |
Muc55B-PB | 485 | CG5765-PB | 290..408 | 107..222 | 155 | 39.5 | Plus |
Muc55B-PA | 485 | CG5765-PA | 290..408 | 107..222 | 155 | 39.5 | Plus |
Muc55B-PB | 485 | CG5765-PB | 318..438 | 107..221 | 148 | 38.9 | Plus |
Muc55B-PA | 485 | CG5765-PA | 318..438 | 107..221 | 148 | 38.9 | Plus |