Clone RH25118 Report

Search the DGRC for RH25118

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:251
Well:18
Vector:pFlc-1
Associated Gene/Transcriptscf-RA
Protein status:RH25118.pep: gold
Preliminary Size:1579
Sequenced Size:1668

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9148 2001-12-13 Blastp of sequenced clone
CG9148 2002-01-01 Sim4 clustering to Release 2
CG9148 2003-01-01 Sim4 clustering to Release 3
scf 2008-04-29 Release 5.5 accounting
scf 2008-08-15 Release 5.9 accounting
scf 2008-12-18 5.12 accounting

Clone Sequence Records

RH25118.complete Sequence

1668 bp (1668 high quality bases) assembled on 2001-12-13

GenBank Submission: AY070689

> RH25118.complete
GACTAGAAAAGTAACAAGAGAGATTGTTGTTTTCGAAATATCTCAATCAC
ACACGATTTATTCTCAGTTTGCCTGCCGAACCGAACGGACGTGAGCGCTC
ACGAGAAATGGCTAGAACCCGAATTCAGATGCTGCTACTTGTTGTTGCGC
TGACGGCGGTGATAAGTGGAGCAAGTGCCTCCAGCATACCGGAAGAGCTG
CCCCACAATCCGCTCGAGCACGACCCCCTGCACCCCAGGCACTTCGACGG
GGGCGAGCACAATGCCCAGTTTGACCACGAAGCCTTCTTGGGCCCGGACG
AGTCCAAGAAGTTCGACAGCCTGACACCCGAGGAGAGCAGGCGGAGATTG
GGCGTCATTGTGGACCGAATCGACGAGAACAAGGACGGGTCAGTCACATT
GGCGGAGCTAAAGAACTGGATCGCCTACACCCAGAGGCGCTACATCGAAG
AAGACGTGGGTCGCGTGTGGAAGCAGCACAATCCGGACAACAATGAGACC
ATAAGCTGGGATTCCTACATGCAGACTGTCTACGGCTTCATGGATGATCT
GAGCCCCGACGAGAAGGAACAGGAGGAAAATGGAGTCAGCTACAAGAGCC
TGCTGAAACGCGATCGGTACCGCTGGTCGGTGGCCGACCAGGACTTGGAT
GACAATCTCACCAAGGATGAGTTTACCGCCTTCCTGCACCCCGAGGACCA
TCCCAGCATGAAGGGTGTGGTTCTGCGCGAGACCATTACCGATCTGGACA
AGGACCACGATGGCAAGATCTCGGTGGACGAGTACATTGGCGACATGTAC
CGATCGACGGGCGCGGAAGACGAGGAGCCCGAGTGGGTGGCTAACGAAAG
GGAGGCGTTCTCCACACATCGCGACCTGGACAAAGATGGTTATTTGAACG
AGGAGGAAGTGAAGCAGTGGATTGCGCCCCATGACTTCGATCATTCGGAG
GCGGAGGCCAAGCACCTGCTGTTCGAGGCCGATGCGGACCACGATGATAA
GTTGACAAAGGAGGAAATACTAGACAAGTACGACGTTTTCGTCGGCTCCC
AGGCCACCGATTTCGGCGAGGCCTTGGCCCGCCACGATGAGTTCTAGAGT
GTCTAGATACCCAGAATCCCTGAGATTAAGATTGATCCTATGAATCTCCC
ACTTCGCATGCCAAATAACTTGTAATCTTGTCTAGCCCTTAAGACCTTAA
GAAAGTGCATTATAAACCGACTCGAATGATGGGCCTTCCTTTTGTATGTG
GCACCACGACCAATTGATTTGAGGTGATTGTTTAATTGAAAGGCGTCCAC
GTCAGCTCTTGGAGCATCAATGGCCACGTCACTGGAACGAAACCCCATCC
GCACACGCATGCGGTCACTTGACCCCCTCCCCCTTGCCCCGAGCCACAGA
TACGCCGCCTTTGCCTGTGTAACATATGTATAAACATAAATGATTTTCGC
TGTAGCCCGATTTATTTCCAGCTGCGAGAACATTACAAAGAGAGTGTGAG
TGCACCGGAAAAAACAATAGGAATCTTGAATGCCTACGATTGCCACTTAT
CTGGACTTGATACTACATTTTACATCTAACTATTATTAACAAGATCATTT
TAGAGTTTAGTTGCAACATGTTCAATAAAATGCTTTTATTCTATTTACTT
CTAAAAAAAAAAAAAAAA

RH25118.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
scf-RA 1693 scf-RA 1..1653 2..1653 8195 99.8 Plus
scf.b 1676 scf.b 1..1636 19..1653 8110 99.8 Plus
scf-RC 1676 scf-RC 1..1636 19..1653 8110 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:40:53
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 1298823..1299895 582..1652 5145 99.1 Plus
chr3L 24539361 chr3L 1298125..1298706 2..583 2745 98.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:25:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:40:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1299318..1300390 582..1653 5285 99.7 Plus
3L 28110227 3L 1298620..1299201 2..583 2910 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:14:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 1299318..1300390 582..1653 5295 99.7 Plus
3L 28103327 3L 1298620..1299201 2..583 2910 100 Plus
Blast to na_te.dros performed 2019-03-16 09:40:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Uvir 6564 Dvir\Uvir VIRUVIR 6564bp 6088..6154 40..109 118 65.7 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 5926..5992 40..109 118 65.7 Plus

RH25118.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:41:38 Download gff for RH25118.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 1298123..1298705 1..582 97 -> Plus
chr3L 1298824..1299894 583..1652 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:43:50 Download gff for RH25118.complete
Subject Subject Range Query Range Percent Splice Strand
scf-RA 1..990 108..1097 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:16:31 Download gff for RH25118.complete
Subject Subject Range Query Range Percent Splice Strand
scf-RA 1..990 108..1097 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:03:55 Download gff for RH25118.complete
Subject Subject Range Query Range Percent Splice Strand
scf-RA 1..990 108..1097 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:42:39 Download gff for RH25118.complete
Subject Subject Range Query Range Percent Splice Strand
scf-RA 1..990 108..1097 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:16:39 Download gff for RH25118.complete
Subject Subject Range Query Range Percent Splice Strand
scf-RA 1..990 108..1097 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:48:51 Download gff for RH25118.complete
Subject Subject Range Query Range Percent Splice Strand
scf-RA 1..1654 1..1652 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:16:31 Download gff for RH25118.complete
Subject Subject Range Query Range Percent Splice Strand
scf-RA 1..1654 1..1652 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:03:55 Download gff for RH25118.complete
Subject Subject Range Query Range Percent Splice Strand
scf-RA 1..1600 54..1652 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:42:39 Download gff for RH25118.complete
Subject Subject Range Query Range Percent Splice Strand
scf-RA 1..1654 1..1652 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:16:39 Download gff for RH25118.complete
Subject Subject Range Query Range Percent Splice Strand
scf-RA 1..1600 54..1652 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:41:38 Download gff for RH25118.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1298618..1299200 1..582 99 -> Plus
3L 1299319..1300389 583..1652 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:41:38 Download gff for RH25118.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1298618..1299200 1..582 99 -> Plus
3L 1299319..1300389 583..1652 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:41:38 Download gff for RH25118.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1298618..1299200 1..582 99 -> Plus
3L 1299319..1300389 583..1652 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:03:55 Download gff for RH25118.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1298618..1299200 1..582 99 -> Plus
arm_3L 1299319..1300389 583..1652 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:18:42 Download gff for RH25118.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1298618..1299200 1..582 99 -> Plus
3L 1299319..1300389 583..1652 99   Plus

RH25118.pep Sequence

Translation from 107 to 1096

> RH25118.pep
MARTRIQMLLLVVALTAVISGASASSIPEELPHNPLEHDPLHPRHFDGGE
HNAQFDHEAFLGPDESKKFDSLTPEESRRRLGVIVDRIDENKDGSVTLAE
LKNWIAYTQRRYIEEDVGRVWKQHNPDNNETISWDSYMQTVYGFMDDLSP
DEKEQEENGVSYKSLLKRDRYRWSVADQDLDDNLTKDEFTAFLHPEDHPS
MKGVVLRETITDLDKDHDGKISVDEYIGDMYRSTGAEDEEPEWVANEREA
FSTHRDLDKDGYLNEEEVKQWIAPHDFDHSEAEAKHLLFEADADHDDKLT
KEEILDKYDVFVGSQATDFGEALARHDEF*

RH25118.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:32:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24450-PA 329 GF24450-PA 1..329 1..329 1299 75.1 Plus
Dana\GF14160-PA 343 GF14160-PA 59..333 45..323 517 39.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:32:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14777-PA 329 GG14777-PA 1..329 1..329 1535 92.7 Plus
Dere\GG24324-PA 342 GG24324-PA 8..332 6..323 514 37.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:32:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15448-PA 328 GH15448-PA 6..328 10..329 1207 72.4 Plus
Dgri\GH10271-PA 342 GH10271-PA 10..332 8..323 490 36.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:12:25
Subject Length Description Subject Range Query Range Score Percent Strand
scf-PA 329 CG9148-PA 1..329 1..329 1756 100 Plus
scf-PB 192 CG9148-PB 1..192 138..329 1028 100 Plus
CG31650-PF 342 CG31650-PF 8..332 6..323 552 36.7 Plus
CG31650-PE 342 CG31650-PE 8..332 6..323 552 36.7 Plus
CG31650-PD 342 CG31650-PD 8..332 6..323 552 36.7 Plus
CG31650-PC 342 CG31650-PC 8..332 6..323 552 36.7 Plus
CG31650-PB 342 CG31650-PB 8..332 6..323 552 36.7 Plus
CG31650-PA 342 CG31650-PA 8..332 6..323 552 36.7 Plus
CG31650-PG 339 CG31650-PG 8..329 6..323 545 37 Plus
CG31475-PB 418 CG31475-PB 166..418 87..329 160 22.9 Plus
CG31475-PA 418 CG31475-PA 166..418 87..329 160 22.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:32:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13049-PA 326 GI13049-PA 26..326 29..329 1221 73.8 Plus
Dmoj\GI15682-PA 341 GI15682-PA 1..331 1..323 487 34.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:32:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16174-PA 321 GL16174-PA 1..321 9..329 1267 74.1 Plus
Dper\GL13125-PA 300 GL13125-PA 20..300 49..329 847 55.5 Plus
Dper\GL26479-PA 345 GL26479-PA 1..335 1..323 490 35.3 Plus
Dper\GL12961-PA 334 GL12961-PA 39..173 60..213 377 49.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:32:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21575-PA 328 GA21575-PA 1..328 1..329 1275 74.2 Plus
Dpse\GA23070-PA 314 GA23070-PA 3..314 4..329 872 50.6 Plus
Dpse\GA16367-PA 345 GA16367-PA 1..335 1..323 490 35.3 Plus
Dpse\GA22996-PA 216 GA22996-PA 43..150 70..190 292 47.9 Plus
Dpse\GA22996-PA 216 GA22996-PA 97..216 213..329 193 38.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:32:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14396-PA 329 GM14396-PA 1..329 1..329 1678 95.7 Plus
Dsec\GM12990-PA 329 GM12990-PA 1..329 1..329 1678 95.7 Plus
Dsec\GM18042-PA 342 GM18042-PA 8..332 6..323 516 37.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:32:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13605-PA 329 GD13605-PA 1..329 1..329 1690 96.7 Plus
Dsim\GD11983-PA 342 GD11983-PA 8..332 6..323 516 37.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:32:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12145-PA 326 GJ12145-PA 27..326 30..329 1244 75 Plus
Dvir\GJ10155-PA 342 GJ10155-PA 10..332 8..323 486 35.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:32:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20385-PA 326 GK20385-PA 27..326 27..329 1173 74.6 Plus
Dwil\GK24151-PA 332 GK24151-PA 48..322 45..323 484 38.6 Plus
Dwil\GK13801-PA 532 GK13801-PA 274..532 81..329 151 24.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:32:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21140-PA 328 GE21140-PA 1..328 1..329 1473 90.6 Plus
Dyak\GE18703-PA 342 GE18703-PA 8..332 6..323 516 37 Plus

RH25118.hyp Sequence

Translation from 107 to 1096

> RH25118.hyp
MARTRIQMLLLVVALTAVISGASASSIPEELPHNPLEHDPLHPRHFDGGE
HNAQFDHEAFLGPDESKKFDSLTPEESRRRLGVIVDRIDENKDGSVTLAE
LKNWIAYTQRRYIEEDVGRVWKQHNPDNNETISWDSYMQTVYGFMDDLSP
DEKEQEENGVSYKSLLKRDRYRWSVADQDLDDNLTKDEFTAFLHPEDHPS
MKGVVLRETITDLDKDHDGKISVDEYIGDMYRSTGAEDEEPEWVANEREA
FSTHRDLDKDGYLNEEEVKQWIAPHDFDHSEAEAKHLLFEADADHDDKLT
KEEILDKYDVFVGSQATDFGEALARHDEF*

RH25118.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:40:35
Subject Length Description Subject Range Query Range Score Percent Strand
scf-PA 329 CG9148-PA 1..329 1..329 1756 100 Plus
scf-PB 192 CG9148-PB 1..192 138..329 1028 100 Plus
CG31650-PF 342 CG31650-PF 8..332 6..323 552 36.7 Plus
CG31650-PE 342 CG31650-PE 8..332 6..323 552 36.7 Plus
CG31650-PD 342 CG31650-PD 8..332 6..323 552 36.7 Plus