BDGP Sequence Production Resources |
Search the DGRC for RH25118
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 251 |
Well: | 18 |
Vector: | pFlc-1 |
Associated Gene/Transcript | scf-RA |
Protein status: | RH25118.pep: gold |
Preliminary Size: | 1579 |
Sequenced Size: | 1668 |
Gene | Date | Evidence |
---|---|---|
CG9148 | 2001-12-13 | Blastp of sequenced clone |
CG9148 | 2002-01-01 | Sim4 clustering to Release 2 |
CG9148 | 2003-01-01 | Sim4 clustering to Release 3 |
scf | 2008-04-29 | Release 5.5 accounting |
scf | 2008-08-15 | Release 5.9 accounting |
scf | 2008-12-18 | 5.12 accounting |
1668 bp (1668 high quality bases) assembled on 2001-12-13
GenBank Submission: AY070689
> RH25118.complete GACTAGAAAAGTAACAAGAGAGATTGTTGTTTTCGAAATATCTCAATCAC ACACGATTTATTCTCAGTTTGCCTGCCGAACCGAACGGACGTGAGCGCTC ACGAGAAATGGCTAGAACCCGAATTCAGATGCTGCTACTTGTTGTTGCGC TGACGGCGGTGATAAGTGGAGCAAGTGCCTCCAGCATACCGGAAGAGCTG CCCCACAATCCGCTCGAGCACGACCCCCTGCACCCCAGGCACTTCGACGG GGGCGAGCACAATGCCCAGTTTGACCACGAAGCCTTCTTGGGCCCGGACG AGTCCAAGAAGTTCGACAGCCTGACACCCGAGGAGAGCAGGCGGAGATTG GGCGTCATTGTGGACCGAATCGACGAGAACAAGGACGGGTCAGTCACATT GGCGGAGCTAAAGAACTGGATCGCCTACACCCAGAGGCGCTACATCGAAG AAGACGTGGGTCGCGTGTGGAAGCAGCACAATCCGGACAACAATGAGACC ATAAGCTGGGATTCCTACATGCAGACTGTCTACGGCTTCATGGATGATCT GAGCCCCGACGAGAAGGAACAGGAGGAAAATGGAGTCAGCTACAAGAGCC TGCTGAAACGCGATCGGTACCGCTGGTCGGTGGCCGACCAGGACTTGGAT GACAATCTCACCAAGGATGAGTTTACCGCCTTCCTGCACCCCGAGGACCA TCCCAGCATGAAGGGTGTGGTTCTGCGCGAGACCATTACCGATCTGGACA AGGACCACGATGGCAAGATCTCGGTGGACGAGTACATTGGCGACATGTAC CGATCGACGGGCGCGGAAGACGAGGAGCCCGAGTGGGTGGCTAACGAAAG GGAGGCGTTCTCCACACATCGCGACCTGGACAAAGATGGTTATTTGAACG AGGAGGAAGTGAAGCAGTGGATTGCGCCCCATGACTTCGATCATTCGGAG GCGGAGGCCAAGCACCTGCTGTTCGAGGCCGATGCGGACCACGATGATAA GTTGACAAAGGAGGAAATACTAGACAAGTACGACGTTTTCGTCGGCTCCC AGGCCACCGATTTCGGCGAGGCCTTGGCCCGCCACGATGAGTTCTAGAGT GTCTAGATACCCAGAATCCCTGAGATTAAGATTGATCCTATGAATCTCCC ACTTCGCATGCCAAATAACTTGTAATCTTGTCTAGCCCTTAAGACCTTAA GAAAGTGCATTATAAACCGACTCGAATGATGGGCCTTCCTTTTGTATGTG GCACCACGACCAATTGATTTGAGGTGATTGTTTAATTGAAAGGCGTCCAC GTCAGCTCTTGGAGCATCAATGGCCACGTCACTGGAACGAAACCCCATCC GCACACGCATGCGGTCACTTGACCCCCTCCCCCTTGCCCCGAGCCACAGA TACGCCGCCTTTGCCTGTGTAACATATGTATAAACATAAATGATTTTCGC TGTAGCCCGATTTATTTCCAGCTGCGAGAACATTACAAAGAGAGTGTGAG TGCACCGGAAAAAACAATAGGAATCTTGAATGCCTACGATTGCCACTTAT CTGGACTTGATACTACATTTTACATCTAACTATTATTAACAAGATCATTT TAGAGTTTAGTTGCAACATGTTCAATAAAATGCTTTTATTCTATTTACTT CTAAAAAAAAAAAAAAAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 1298123..1298705 | 1..582 | 97 | -> | Plus |
chr3L | 1298824..1299894 | 583..1652 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scf-RA | 1..990 | 108..1097 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scf-RA | 1..990 | 108..1097 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scf-RA | 1..990 | 108..1097 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scf-RA | 1..990 | 108..1097 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scf-RA | 1..990 | 108..1097 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scf-RA | 1..1654 | 1..1652 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scf-RA | 1..1654 | 1..1652 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scf-RA | 1..1600 | 54..1652 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scf-RA | 1..1654 | 1..1652 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scf-RA | 1..1600 | 54..1652 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 1298618..1299200 | 1..582 | 99 | -> | Plus |
3L | 1299319..1300389 | 583..1652 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 1298618..1299200 | 1..582 | 99 | -> | Plus |
3L | 1299319..1300389 | 583..1652 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 1298618..1299200 | 1..582 | 99 | -> | Plus |
3L | 1299319..1300389 | 583..1652 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 1298618..1299200 | 1..582 | 99 | -> | Plus |
arm_3L | 1299319..1300389 | 583..1652 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 1298618..1299200 | 1..582 | 99 | -> | Plus |
3L | 1299319..1300389 | 583..1652 | 99 | Plus |
Translation from 107 to 1096
> RH25118.pep MARTRIQMLLLVVALTAVISGASASSIPEELPHNPLEHDPLHPRHFDGGE HNAQFDHEAFLGPDESKKFDSLTPEESRRRLGVIVDRIDENKDGSVTLAE LKNWIAYTQRRYIEEDVGRVWKQHNPDNNETISWDSYMQTVYGFMDDLSP DEKEQEENGVSYKSLLKRDRYRWSVADQDLDDNLTKDEFTAFLHPEDHPS MKGVVLRETITDLDKDHDGKISVDEYIGDMYRSTGAEDEEPEWVANEREA FSTHRDLDKDGYLNEEEVKQWIAPHDFDHSEAEAKHLLFEADADHDDKLT KEEILDKYDVFVGSQATDFGEALARHDEF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24450-PA | 329 | GF24450-PA | 1..329 | 1..329 | 1299 | 75.1 | Plus |
Dana\GF14160-PA | 343 | GF14160-PA | 59..333 | 45..323 | 517 | 39.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14777-PA | 329 | GG14777-PA | 1..329 | 1..329 | 1535 | 92.7 | Plus |
Dere\GG24324-PA | 342 | GG24324-PA | 8..332 | 6..323 | 514 | 37.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15448-PA | 328 | GH15448-PA | 6..328 | 10..329 | 1207 | 72.4 | Plus |
Dgri\GH10271-PA | 342 | GH10271-PA | 10..332 | 8..323 | 490 | 36.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
scf-PA | 329 | CG9148-PA | 1..329 | 1..329 | 1756 | 100 | Plus |
scf-PB | 192 | CG9148-PB | 1..192 | 138..329 | 1028 | 100 | Plus |
CG31650-PF | 342 | CG31650-PF | 8..332 | 6..323 | 552 | 36.7 | Plus |
CG31650-PE | 342 | CG31650-PE | 8..332 | 6..323 | 552 | 36.7 | Plus |
CG31650-PD | 342 | CG31650-PD | 8..332 | 6..323 | 552 | 36.7 | Plus |
CG31650-PC | 342 | CG31650-PC | 8..332 | 6..323 | 552 | 36.7 | Plus |
CG31650-PB | 342 | CG31650-PB | 8..332 | 6..323 | 552 | 36.7 | Plus |
CG31650-PA | 342 | CG31650-PA | 8..332 | 6..323 | 552 | 36.7 | Plus |
CG31650-PG | 339 | CG31650-PG | 8..329 | 6..323 | 545 | 37 | Plus |
CG31475-PB | 418 | CG31475-PB | 166..418 | 87..329 | 160 | 22.9 | Plus |
CG31475-PA | 418 | CG31475-PA | 166..418 | 87..329 | 160 | 22.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13049-PA | 326 | GI13049-PA | 26..326 | 29..329 | 1221 | 73.8 | Plus |
Dmoj\GI15682-PA | 341 | GI15682-PA | 1..331 | 1..323 | 487 | 34.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16174-PA | 321 | GL16174-PA | 1..321 | 9..329 | 1267 | 74.1 | Plus |
Dper\GL13125-PA | 300 | GL13125-PA | 20..300 | 49..329 | 847 | 55.5 | Plus |
Dper\GL26479-PA | 345 | GL26479-PA | 1..335 | 1..323 | 490 | 35.3 | Plus |
Dper\GL12961-PA | 334 | GL12961-PA | 39..173 | 60..213 | 377 | 49.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21575-PA | 328 | GA21575-PA | 1..328 | 1..329 | 1275 | 74.2 | Plus |
Dpse\GA23070-PA | 314 | GA23070-PA | 3..314 | 4..329 | 872 | 50.6 | Plus |
Dpse\GA16367-PA | 345 | GA16367-PA | 1..335 | 1..323 | 490 | 35.3 | Plus |
Dpse\GA22996-PA | 216 | GA22996-PA | 43..150 | 70..190 | 292 | 47.9 | Plus |
Dpse\GA22996-PA | 216 | GA22996-PA | 97..216 | 213..329 | 193 | 38.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14396-PA | 329 | GM14396-PA | 1..329 | 1..329 | 1678 | 95.7 | Plus |
Dsec\GM12990-PA | 329 | GM12990-PA | 1..329 | 1..329 | 1678 | 95.7 | Plus |
Dsec\GM18042-PA | 342 | GM18042-PA | 8..332 | 6..323 | 516 | 37.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13605-PA | 329 | GD13605-PA | 1..329 | 1..329 | 1690 | 96.7 | Plus |
Dsim\GD11983-PA | 342 | GD11983-PA | 8..332 | 6..323 | 516 | 37.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12145-PA | 326 | GJ12145-PA | 27..326 | 30..329 | 1244 | 75 | Plus |
Dvir\GJ10155-PA | 342 | GJ10155-PA | 10..332 | 8..323 | 486 | 35.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20385-PA | 326 | GK20385-PA | 27..326 | 27..329 | 1173 | 74.6 | Plus |
Dwil\GK24151-PA | 332 | GK24151-PA | 48..322 | 45..323 | 484 | 38.6 | Plus |
Dwil\GK13801-PA | 532 | GK13801-PA | 274..532 | 81..329 | 151 | 24.3 | Plus |
Translation from 107 to 1096
> RH25118.hyp MARTRIQMLLLVVALTAVISGASASSIPEELPHNPLEHDPLHPRHFDGGE HNAQFDHEAFLGPDESKKFDSLTPEESRRRLGVIVDRIDENKDGSVTLAE LKNWIAYTQRRYIEEDVGRVWKQHNPDNNETISWDSYMQTVYGFMDDLSP DEKEQEENGVSYKSLLKRDRYRWSVADQDLDDNLTKDEFTAFLHPEDHPS MKGVVLRETITDLDKDHDGKISVDEYIGDMYRSTGAEDEEPEWVANEREA FSTHRDLDKDGYLNEEEVKQWIAPHDFDHSEAEAKHLLFEADADHDDKLT KEEILDKYDVFVGSQATDFGEALARHDEF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
scf-PA | 329 | CG9148-PA | 1..329 | 1..329 | 1756 | 100 | Plus |
scf-PB | 192 | CG9148-PB | 1..192 | 138..329 | 1028 | 100 | Plus |
CG31650-PF | 342 | CG31650-PF | 8..332 | 6..323 | 552 | 36.7 | Plus |
CG31650-PE | 342 | CG31650-PE | 8..332 | 6..323 | 552 | 36.7 | Plus |
CG31650-PD | 342 | CG31650-PD | 8..332 | 6..323 | 552 | 36.7 | Plus |