Clone RH26041 Report

Search the DGRC for RH26041

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:260
Well:41
Vector:pFlc-1
Associated Gene/TranscriptPal2-RA
Protein status:RH26041.pep: gold
Preliminary Size:1332
Sequenced Size:1999

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5472 2002-01-01 Sim4 clustering to Release 2
CG5472 2002-05-18 Blastp of sequenced clone
CG5472 2003-01-01 Sim4 clustering to Release 3
Pal 2008-04-29 Release 5.5 accounting
Pal 2008-08-15 Release 5.9 accounting
Pal 2008-12-18 5.12 accounting

Clone Sequence Records

RH26041.complete Sequence

1999 bp (1999 high quality bases) assembled on 2002-05-18

GenBank Submission: AY119165

> RH26041.complete
GCGAGTCAGTTAATCTATTGCCAGCTCGACATATAGACACCGCCAACAGA
TGTTGGCAGTGAGGAAAATCGAGTGATAGAAGCCAGAACCGAGTCGCCGT
TGTTTTGGGTGAAGAAAATCGCAGGACTTCCAGAAAATGTCGCGTCTCCT
GTTCGTGGCGCTGCTAGCCATAAGCTTGGGATATGTGGCGTCCAGCAGCA
GCAACCACCTGCCAGCGGGCTTGGCCATGGACCTGGGACCAGGTGTCAAC
CTCAACGAGCGCTTCTTCGACCAGGTGCGGGCGCTCATCAAGCGGAGGCT
CCAGGAGAAGGGGCTCGCGAAGCCGGAACAGCCAGAGCTGGCAATGCCAC
TGACCGACGATGATGCAGTGGCCCTGCAGAACCAACGCAGCTACGACAAC
GTGCCACTTCCGGCGGCCAGTGTGCCGACTCCCGTGCTCGTGGAGAACTG
GCCCACCGAGCAGCACAGCTTTGGCCAGGTCACCGCCGTGGCCGTGGATC
CGCAGGGTAGTCCGGTGGTTTTCCATCGCGCCGAGCGCTACTGGGATGTA
AACACATTCAACGAGAGCAATATATACTACCTTATTGAGTACGGGCCCAT
CAAGGAGAACACCATCTACGTGCTGGACGCAAAGACGGGCGCCATCAAGT
CGGGTTGGGGATCGAACATGTTCTACATGCCGCATGGCCTGACCATCGAC
TTGCACGGGAATTACTGGATCACGGATGTGGCCATGCACCAGGCTTTCAA
GTTCAAGCCCTTCAGCAACAAGCCTCTGCTGACCATTGGCAAGCGCTTCA
GGCCAGGATCATCCGTCAAGCATCTGTGCAAGCCCACATCCATTGCAGTG
GCGACCACCGGAGAGTTCTTCATCGCCGATGGTTACTGCAACAGCCGCAT
ACTTAAGTTCAATGCCGCTGGCAAGCTGCTACGAACGATTCCCCAGCCAC
CCGAATTCCTCTCTTTGCAGGTGCCACACGCCATCACCTTGCTGGAACAC
CTCGATCTACTGTGCATCGCCGACAGGGAGAACATGAGGGTGGTCTGTCC
CAAAGCTGGCTTGATATCCTCCCACGGTGAGGGTGAACCGGCGGCCACCA
TCCAGGAACCGGACCTGGGTCGCGTCTTCGGAGTGGCCAGCTTCGGGGAC
ATAGTGTTCGCCGTTAATGGACCCACATCCATGCTGCCGGTGCGGGGATT
CACCATCGATCCGCGCTCGGAGACGATCATCGGGCACTGGGGCGAGTTCA
AGAATCCGCACTCCATGGCGGTCAGTGTCAACGGATCGGCGCTGTATGTG
ACCGAGATCGGAACCAATCACCAGACGAACCGAGTGTGGAAGTATGTGCT
GGCCTGAGCCTAAGCCTAAGCCAAACCCGAATCCCGAATCCAGAAGGACA
CGACTTGCACTGCGCTCCTGCATATCCTTAGACCCATAGACTCATCCCAA
CTAGTTATCAGCAGAAACAGAAAGAGAACCACAATCAGAGCCGAATCAAA
TACAGATTATAGCGATCCTAAGCCTAAGCAGAGCCCACACACCAAGTACA
GTTTAACGTGACCAGTTGTCAGATCAATAGAGAATAGTCAGTGCTTAAGT
AATGTACAAGTTAAGTATGTAAATTGCTTGGAAACAATACCACAACAAAC
ATAACCTCAGACTCTTATGTTTTGCACTTTAATGAGCAAACAAAAACGAA
ATGAAAACGAAATTACAAAGCAGCTTAAATAGTACATATACTTAAATGTA
ATAGTTACGCGTAGGCACTAACTAGGCACGAATGTGAGGATGTGGGGACG
CGAGCATGGATAACCGATTTCGCAGATAACCGGGGGCAACCAGCGCATAT
AACATACTTGTGTATCATATTGTAACCTATATCAAATATATAATCGTATC
TGTATCTTATCAACTTATCGTAGCCCATGTAAATTATGTACGTAATAAAC
TGTTGTTGTTGTGACGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

RH26041.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:01:08
Subject Length Description Subject Range Query Range Score Percent Strand
Pal.a 2279 Pal.a 123..2090 3..1970 9825 99.9 Plus
Pal.b 2065 Pal.b 123..2065 3..1945 9700 99.9 Plus
Pal-RD 1807 Pal-RD 123..1807 3..1687 8410 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:25:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19575844..19576758 1054..1968 4485 99.3 Plus
chr2R 21145070 chr2R 19574335..19574884 3..552 2705 99.5 Plus
chr2R 21145070 chr2R 19575107..19575305 553..751 965 99 Plus
chr2R 21145070 chr2R 19575365..19575480 750..865 580 100 Plus
chr2R 21145070 chr2R 19575687..19575787 953..1053 475 98 Plus
chr2R 21145070 chr2R 19575541..19575630 864..953 435 98.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:25:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:25:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23689670..23690586 1054..1970 4585 100 Plus
2R 25286936 2R 23688161..23688710 3..552 2750 100 Plus
2R 25286936 2R 23688933..23689131 553..751 995 100 Plus
2R 25286936 2R 23689191..23689306 750..865 580 100 Plus
2R 25286936 2R 23689513..23689613 953..1053 505 100 Plus
2R 25286936 2R 23689367..23689456 864..953 435 98.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:32:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 23690869..23691785 1054..1970 4585 100 Plus
2R 25260384 2R 23689360..23689909 3..552 2750 100 Plus
2R 25260384 2R 23690132..23690330 553..751 995 100 Plus
2R 25260384 2R 23690390..23690505 750..865 580 100 Plus
2R 25260384 2R 23690712..23690812 953..1053 505 100 Plus
2R 25260384 2R 23690566..23690655 864..953 435 98.8 Plus
Blast to na_te.dros performed on 2019-03-15 20:25:46 has no hits.

RH26041.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:26:48 Download gff for RH26041.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19575543..19575630 866..953 98 -> Plus
chr2R 19575688..19575787 954..1053 98 -> Plus
chr2R 19574332..19574884 1..552 99 -> Plus
chr2R 19575107..19575309 553..757 97 -> Plus
chr2R 19575373..19575480 758..865 100 -> Plus
chr2R 19575844..19576758 1054..1968 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:43:58 Download gff for RH26041.complete
Subject Subject Range Query Range Percent Splice Strand
Pal-RA 1..1221 137..1357 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:41:36 Download gff for RH26041.complete
Subject Subject Range Query Range Percent Splice Strand
Pal-RD 1..1221 137..1357 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:07:22 Download gff for RH26041.complete
Subject Subject Range Query Range Percent Splice Strand
Pal2-RA 1..1221 137..1357 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:33:41 Download gff for RH26041.complete
Subject Subject Range Query Range Percent Splice Strand
Pal-RA 1..1221 137..1357 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:35:57 Download gff for RH26041.complete
Subject Subject Range Query Range Percent Splice Strand
Pal2-RA 1..1221 137..1357 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:15:39 Download gff for RH26041.complete
Subject Subject Range Query Range Percent Splice Strand
Pal-RA 1..1969 1..1968 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:41:35 Download gff for RH26041.complete
Subject Subject Range Query Range Percent Splice Strand
Pal-RA 1..1969 1..1968 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:07:22 Download gff for RH26041.complete
Subject Subject Range Query Range Percent Splice Strand
Pal2-RA 82..2050 1..1968 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:33:42 Download gff for RH26041.complete
Subject Subject Range Query Range Percent Splice Strand
Pal-RA 1..1969 1..1968 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:35:57 Download gff for RH26041.complete
Subject Subject Range Query Range Percent Splice Strand
Pal2-RE 82..2050 1..1968 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:26:48 Download gff for RH26041.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23689199..23689306 758..865 100 -> Plus
2R 23689369..23689456 866..953 98 -> Plus
2R 23689514..23689613 954..1053 100 -> Plus
2R 23688933..23689135 553..757 98 -> Plus
2R 23688158..23688710 1..552 99 -> Plus
2R 23689670..23690584 1054..1968 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:26:48 Download gff for RH26041.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23689199..23689306 758..865 100 -> Plus
2R 23689369..23689456 866..953 98 -> Plus
2R 23689514..23689613 954..1053 100 -> Plus
2R 23688933..23689135 553..757 98 -> Plus
2R 23688158..23688710 1..552 99 -> Plus
2R 23689670..23690584 1054..1968 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:26:48 Download gff for RH26041.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23689199..23689306 758..865 100 -> Plus
2R 23689369..23689456 866..953 98 -> Plus
2R 23689514..23689613 954..1053 100 -> Plus
2R 23688933..23689135 553..757 98 -> Plus
2R 23688158..23688710 1..552 99 -> Plus
2R 23689670..23690584 1054..1968 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:07:22 Download gff for RH26041.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19575681..19576233 1..552 99 -> Plus
arm_2R 19576456..19576658 553..757 98 -> Plus
arm_2R 19576722..19576829 758..865 100 -> Plus
arm_2R 19576892..19576979 866..953 98 -> Plus
arm_2R 19577037..19577136 954..1053 100 -> Plus
arm_2R 19577193..19578107 1054..1968 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:06:00 Download gff for RH26041.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23689375..23689927 1..552 99 -> Plus
2R 23690150..23690352 553..757 98 -> Plus
2R 23690416..23690523 758..865 100 -> Plus
2R 23690586..23690673 866..953 98 -> Plus
2R 23690731..23690830 954..1053 100 -> Plus
2R 23690887..23691801 1054..1968 100   Plus

RH26041.pep Sequence

Translation from 136 to 1356

> RH26041.pep
MSRLLFVALLAISLGYVASSSSNHLPAGLAMDLGPGVNLNERFFDQVRAL
IKRRLQEKGLAKPEQPELAMPLTDDDAVALQNQRSYDNVPLPAASVPTPV
LVENWPTEQHSFGQVTAVAVDPQGSPVVFHRAERYWDVNTFNESNIYYLI
EYGPIKENTIYVLDAKTGAIKSGWGSNMFYMPHGLTIDLHGNYWITDVAM
HQAFKFKPFSNKPLLTIGKRFRPGSSVKHLCKPTSIAVATTGEFFIADGY
CNSRILKFNAAGKLLRTIPQPPEFLSLQVPHAITLLEHLDLLCIADRENM
RVVCPKAGLISSHGEGEPAATIQEPDLGRVFGVASFGDIVFAVNGPTSML
PVRGFTIDPRSETIIGHWGEFKNPHSMAVSVNGSALYVTEIGTNHQTNRV
WKYVLA*

RH26041.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:38:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13074-PA 413 GF13074-PA 1..413 1..406 1949 90.6 Plus
Dana\GF13565-PA 539 GF13565-PA 80..404 88..391 604 41.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:38:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22877-PA 407 GG22877-PA 1..407 1..406 2118 97.5 Plus
Dere\GG24122-PA 541 GG24122-PA 83..407 88..391 617 41 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:38:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20345-PA 389 GH20345-PA 1..389 1..406 1758 82.3 Plus
Dgri\GH21446-PA 538 GH21446-PA 74..404 83..391 609 39.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:13:22
Subject Length Description Subject Range Query Range Score Percent Strand
Pal2-PE 406 CG5472-PE 1..406 1..406 2136 100 Plus
Pal2-PD 406 CG5472-PD 1..406 1..406 2136 100 Plus
Pal2-PA 406 CG5472-PA 1..406 1..406 2136 100 Plus
Pal1-PC 511 CG12130-PC 74..407 63..391 606 39.7 Plus
Pal1-PD 541 CG12130-PD 74..407 63..391 606 39.7 Plus
Pal1-PA 541 CG12130-PA 74..407 63..391 606 39.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:38:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20014-PA 388 GI20014-PA 17..388 17..406 1745 83.1 Plus
Dmoj\GI20251-PA 552 GI20251-PA 65..413 51..391 625 38.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16880-PA 370 GL16880-PA 2..370 21..406 1785 87.3 Plus
Dper\GL16764-PA 543 GL16764-PA 76..407 81..391 626 40.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:38:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18906-PA 391 GA18906-PA 1..391 1..406 1885 87.4 Plus
Dpse\GA11425-PA 538 GA11425-PA 71..402 81..391 630 40.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:38:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16037-PA 406 GM16037-PA 1..406 1..406 2146 98.8 Plus
Dsec\GM21169-PA 541 GM21169-PA 74..407 63..391 617 39.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:38:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11785-PA 406 GD11785-PA 1..406 1..406 2150 98.8 Plus
Dsim\GD10702-PA 526 GD10702-PA 74..415 63..399 610 38.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:38:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21262-PA 388 GJ21262-PA 1..388 1..406 1768 82.8 Plus
Dvir\GJ20204-PA 543 GJ20204-PA 62..421 51..404 613 36.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:38:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23070-PA 398 GK23070-PA 9..398 5..406 1782 82.6 Plus
Dwil\GK15744-PA 550 GK15744-PA 58..403 80..404 643 40.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14315-PA 403 GE14315-PA 1..403 1..406 2111 97.5 Plus
Dyak\GE19318-PA 541 GE19318-PA 94..407 98..391 603 41.5 Plus

RH26041.hyp Sequence

Translation from 136 to 905

> RH26041.hyp
MSRLLFVALLAISLGYVASSSSNHLPAGLAMDLGPGVNLNERFFDQVRAL
IKRRLQEKGLAKPEQPELAMPLTDDDAVALQNQRSYDNVPLPAASVPTPV
LVENWPTEQHSFGQVTAVAVDPQGSPVVFHRAERYWDVNTFNESNIYYLI
EYGPIKENTIYVLDAKTGAIKSGWGSNMFYMPHGLTIDLHGNYWITDVAM
HQAFKAALQQQASADHWQALQARIIRQASVQAHIHCSGDHRRVLHRRWLL
QQPHT*

RH26041.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:21:48
Subject Length Description Subject Range Query Range Score Percent Strand
Pal2-PE 406 CG5472-PE 1..205 1..205 1078 100 Plus
Pal2-PD 406 CG5472-PD 1..205 1..205 1078 100 Plus
Pal2-PA 406 CG5472-PA 1..205 1..205 1078 100 Plus
Pal1-PC 511 CG12130-PC 74..201 63..205 293 40.6 Plus
Pal1-PA 541 CG12130-PA 74..201 63..205 293 40.6 Plus