BDGP Sequence Production Resources |
Search the DGRC for RH26041
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 260 |
Well: | 41 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Pal2-RA |
Protein status: | RH26041.pep: gold |
Preliminary Size: | 1332 |
Sequenced Size: | 1999 |
Gene | Date | Evidence |
---|---|---|
CG5472 | 2002-01-01 | Sim4 clustering to Release 2 |
CG5472 | 2002-05-18 | Blastp of sequenced clone |
CG5472 | 2003-01-01 | Sim4 clustering to Release 3 |
Pal | 2008-04-29 | Release 5.5 accounting |
Pal | 2008-08-15 | Release 5.9 accounting |
Pal | 2008-12-18 | 5.12 accounting |
1999 bp (1999 high quality bases) assembled on 2002-05-18
GenBank Submission: AY119165
> RH26041.complete GCGAGTCAGTTAATCTATTGCCAGCTCGACATATAGACACCGCCAACAGA TGTTGGCAGTGAGGAAAATCGAGTGATAGAAGCCAGAACCGAGTCGCCGT TGTTTTGGGTGAAGAAAATCGCAGGACTTCCAGAAAATGTCGCGTCTCCT GTTCGTGGCGCTGCTAGCCATAAGCTTGGGATATGTGGCGTCCAGCAGCA GCAACCACCTGCCAGCGGGCTTGGCCATGGACCTGGGACCAGGTGTCAAC CTCAACGAGCGCTTCTTCGACCAGGTGCGGGCGCTCATCAAGCGGAGGCT CCAGGAGAAGGGGCTCGCGAAGCCGGAACAGCCAGAGCTGGCAATGCCAC TGACCGACGATGATGCAGTGGCCCTGCAGAACCAACGCAGCTACGACAAC GTGCCACTTCCGGCGGCCAGTGTGCCGACTCCCGTGCTCGTGGAGAACTG GCCCACCGAGCAGCACAGCTTTGGCCAGGTCACCGCCGTGGCCGTGGATC CGCAGGGTAGTCCGGTGGTTTTCCATCGCGCCGAGCGCTACTGGGATGTA AACACATTCAACGAGAGCAATATATACTACCTTATTGAGTACGGGCCCAT CAAGGAGAACACCATCTACGTGCTGGACGCAAAGACGGGCGCCATCAAGT CGGGTTGGGGATCGAACATGTTCTACATGCCGCATGGCCTGACCATCGAC TTGCACGGGAATTACTGGATCACGGATGTGGCCATGCACCAGGCTTTCAA GTTCAAGCCCTTCAGCAACAAGCCTCTGCTGACCATTGGCAAGCGCTTCA GGCCAGGATCATCCGTCAAGCATCTGTGCAAGCCCACATCCATTGCAGTG GCGACCACCGGAGAGTTCTTCATCGCCGATGGTTACTGCAACAGCCGCAT ACTTAAGTTCAATGCCGCTGGCAAGCTGCTACGAACGATTCCCCAGCCAC CCGAATTCCTCTCTTTGCAGGTGCCACACGCCATCACCTTGCTGGAACAC CTCGATCTACTGTGCATCGCCGACAGGGAGAACATGAGGGTGGTCTGTCC CAAAGCTGGCTTGATATCCTCCCACGGTGAGGGTGAACCGGCGGCCACCA TCCAGGAACCGGACCTGGGTCGCGTCTTCGGAGTGGCCAGCTTCGGGGAC ATAGTGTTCGCCGTTAATGGACCCACATCCATGCTGCCGGTGCGGGGATT CACCATCGATCCGCGCTCGGAGACGATCATCGGGCACTGGGGCGAGTTCA AGAATCCGCACTCCATGGCGGTCAGTGTCAACGGATCGGCGCTGTATGTG ACCGAGATCGGAACCAATCACCAGACGAACCGAGTGTGGAAGTATGTGCT GGCCTGAGCCTAAGCCTAAGCCAAACCCGAATCCCGAATCCAGAAGGACA CGACTTGCACTGCGCTCCTGCATATCCTTAGACCCATAGACTCATCCCAA CTAGTTATCAGCAGAAACAGAAAGAGAACCACAATCAGAGCCGAATCAAA TACAGATTATAGCGATCCTAAGCCTAAGCAGAGCCCACACACCAAGTACA GTTTAACGTGACCAGTTGTCAGATCAATAGAGAATAGTCAGTGCTTAAGT AATGTACAAGTTAAGTATGTAAATTGCTTGGAAACAATACCACAACAAAC ATAACCTCAGACTCTTATGTTTTGCACTTTAATGAGCAAACAAAAACGAA ATGAAAACGAAATTACAAAGCAGCTTAAATAGTACATATACTTAAATGTA ATAGTTACGCGTAGGCACTAACTAGGCACGAATGTGAGGATGTGGGGACG CGAGCATGGATAACCGATTTCGCAGATAACCGGGGGCAACCAGCGCATAT AACATACTTGTGTATCATATTGTAACCTATATCAAATATATAATCGTATC TGTATCTTATCAACTTATCGTAGCCCATGTAAATTATGTACGTAATAAAC TGTTGTTGTTGTGACGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 19575844..19576758 | 1054..1968 | 4485 | 99.3 | Plus |
chr2R | 21145070 | chr2R | 19574335..19574884 | 3..552 | 2705 | 99.5 | Plus |
chr2R | 21145070 | chr2R | 19575107..19575305 | 553..751 | 965 | 99 | Plus |
chr2R | 21145070 | chr2R | 19575365..19575480 | 750..865 | 580 | 100 | Plus |
chr2R | 21145070 | chr2R | 19575687..19575787 | 953..1053 | 475 | 98 | Plus |
chr2R | 21145070 | chr2R | 19575541..19575630 | 864..953 | 435 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 23689670..23690586 | 1054..1970 | 4585 | 100 | Plus |
2R | 25286936 | 2R | 23688161..23688710 | 3..552 | 2750 | 100 | Plus |
2R | 25286936 | 2R | 23688933..23689131 | 553..751 | 995 | 100 | Plus |
2R | 25286936 | 2R | 23689191..23689306 | 750..865 | 580 | 100 | Plus |
2R | 25286936 | 2R | 23689513..23689613 | 953..1053 | 505 | 100 | Plus |
2R | 25286936 | 2R | 23689367..23689456 | 864..953 | 435 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 23690869..23691785 | 1054..1970 | 4585 | 100 | Plus |
2R | 25260384 | 2R | 23689360..23689909 | 3..552 | 2750 | 100 | Plus |
2R | 25260384 | 2R | 23690132..23690330 | 553..751 | 995 | 100 | Plus |
2R | 25260384 | 2R | 23690390..23690505 | 750..865 | 580 | 100 | Plus |
2R | 25260384 | 2R | 23690712..23690812 | 953..1053 | 505 | 100 | Plus |
2R | 25260384 | 2R | 23690566..23690655 | 864..953 | 435 | 98.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 19575543..19575630 | 866..953 | 98 | -> | Plus |
chr2R | 19575688..19575787 | 954..1053 | 98 | -> | Plus |
chr2R | 19574332..19574884 | 1..552 | 99 | -> | Plus |
chr2R | 19575107..19575309 | 553..757 | 97 | -> | Plus |
chr2R | 19575373..19575480 | 758..865 | 100 | -> | Plus |
chr2R | 19575844..19576758 | 1054..1968 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pal-RA | 1..1221 | 137..1357 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pal-RD | 1..1221 | 137..1357 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pal2-RA | 1..1221 | 137..1357 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pal-RA | 1..1221 | 137..1357 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pal2-RA | 1..1221 | 137..1357 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pal-RA | 1..1969 | 1..1968 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pal-RA | 1..1969 | 1..1968 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pal2-RA | 82..2050 | 1..1968 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pal-RA | 1..1969 | 1..1968 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pal2-RE | 82..2050 | 1..1968 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23689199..23689306 | 758..865 | 100 | -> | Plus |
2R | 23689369..23689456 | 866..953 | 98 | -> | Plus |
2R | 23689514..23689613 | 954..1053 | 100 | -> | Plus |
2R | 23688933..23689135 | 553..757 | 98 | -> | Plus |
2R | 23688158..23688710 | 1..552 | 99 | -> | Plus |
2R | 23689670..23690584 | 1054..1968 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23689199..23689306 | 758..865 | 100 | -> | Plus |
2R | 23689369..23689456 | 866..953 | 98 | -> | Plus |
2R | 23689514..23689613 | 954..1053 | 100 | -> | Plus |
2R | 23688933..23689135 | 553..757 | 98 | -> | Plus |
2R | 23688158..23688710 | 1..552 | 99 | -> | Plus |
2R | 23689670..23690584 | 1054..1968 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23689199..23689306 | 758..865 | 100 | -> | Plus |
2R | 23689369..23689456 | 866..953 | 98 | -> | Plus |
2R | 23689514..23689613 | 954..1053 | 100 | -> | Plus |
2R | 23688933..23689135 | 553..757 | 98 | -> | Plus |
2R | 23688158..23688710 | 1..552 | 99 | -> | Plus |
2R | 23689670..23690584 | 1054..1968 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 19575681..19576233 | 1..552 | 99 | -> | Plus |
arm_2R | 19576456..19576658 | 553..757 | 98 | -> | Plus |
arm_2R | 19576722..19576829 | 758..865 | 100 | -> | Plus |
arm_2R | 19576892..19576979 | 866..953 | 98 | -> | Plus |
arm_2R | 19577037..19577136 | 954..1053 | 100 | -> | Plus |
arm_2R | 19577193..19578107 | 1054..1968 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23689375..23689927 | 1..552 | 99 | -> | Plus |
2R | 23690150..23690352 | 553..757 | 98 | -> | Plus |
2R | 23690416..23690523 | 758..865 | 100 | -> | Plus |
2R | 23690586..23690673 | 866..953 | 98 | -> | Plus |
2R | 23690731..23690830 | 954..1053 | 100 | -> | Plus |
2R | 23690887..23691801 | 1054..1968 | 100 | Plus |
Translation from 136 to 1356
> RH26041.pep MSRLLFVALLAISLGYVASSSSNHLPAGLAMDLGPGVNLNERFFDQVRAL IKRRLQEKGLAKPEQPELAMPLTDDDAVALQNQRSYDNVPLPAASVPTPV LVENWPTEQHSFGQVTAVAVDPQGSPVVFHRAERYWDVNTFNESNIYYLI EYGPIKENTIYVLDAKTGAIKSGWGSNMFYMPHGLTIDLHGNYWITDVAM HQAFKFKPFSNKPLLTIGKRFRPGSSVKHLCKPTSIAVATTGEFFIADGY CNSRILKFNAAGKLLRTIPQPPEFLSLQVPHAITLLEHLDLLCIADRENM RVVCPKAGLISSHGEGEPAATIQEPDLGRVFGVASFGDIVFAVNGPTSML PVRGFTIDPRSETIIGHWGEFKNPHSMAVSVNGSALYVTEIGTNHQTNRV WKYVLA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13074-PA | 413 | GF13074-PA | 1..413 | 1..406 | 1949 | 90.6 | Plus |
Dana\GF13565-PA | 539 | GF13565-PA | 80..404 | 88..391 | 604 | 41.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22877-PA | 407 | GG22877-PA | 1..407 | 1..406 | 2118 | 97.5 | Plus |
Dere\GG24122-PA | 541 | GG24122-PA | 83..407 | 88..391 | 617 | 41 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20345-PA | 389 | GH20345-PA | 1..389 | 1..406 | 1758 | 82.3 | Plus |
Dgri\GH21446-PA | 538 | GH21446-PA | 74..404 | 83..391 | 609 | 39.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pal2-PE | 406 | CG5472-PE | 1..406 | 1..406 | 2136 | 100 | Plus |
Pal2-PD | 406 | CG5472-PD | 1..406 | 1..406 | 2136 | 100 | Plus |
Pal2-PA | 406 | CG5472-PA | 1..406 | 1..406 | 2136 | 100 | Plus |
Pal1-PC | 511 | CG12130-PC | 74..407 | 63..391 | 606 | 39.7 | Plus |
Pal1-PD | 541 | CG12130-PD | 74..407 | 63..391 | 606 | 39.7 | Plus |
Pal1-PA | 541 | CG12130-PA | 74..407 | 63..391 | 606 | 39.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20014-PA | 388 | GI20014-PA | 17..388 | 17..406 | 1745 | 83.1 | Plus |
Dmoj\GI20251-PA | 552 | GI20251-PA | 65..413 | 51..391 | 625 | 38.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16880-PA | 370 | GL16880-PA | 2..370 | 21..406 | 1785 | 87.3 | Plus |
Dper\GL16764-PA | 543 | GL16764-PA | 76..407 | 81..391 | 626 | 40.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18906-PA | 391 | GA18906-PA | 1..391 | 1..406 | 1885 | 87.4 | Plus |
Dpse\GA11425-PA | 538 | GA11425-PA | 71..402 | 81..391 | 630 | 40.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM16037-PA | 406 | GM16037-PA | 1..406 | 1..406 | 2146 | 98.8 | Plus |
Dsec\GM21169-PA | 541 | GM21169-PA | 74..407 | 63..391 | 617 | 39.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11785-PA | 406 | GD11785-PA | 1..406 | 1..406 | 2150 | 98.8 | Plus |
Dsim\GD10702-PA | 526 | GD10702-PA | 74..415 | 63..399 | 610 | 38.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21262-PA | 388 | GJ21262-PA | 1..388 | 1..406 | 1768 | 82.8 | Plus |
Dvir\GJ20204-PA | 543 | GJ20204-PA | 62..421 | 51..404 | 613 | 36.9 | Plus |
Translation from 136 to 905
> RH26041.hyp MSRLLFVALLAISLGYVASSSSNHLPAGLAMDLGPGVNLNERFFDQVRAL IKRRLQEKGLAKPEQPELAMPLTDDDAVALQNQRSYDNVPLPAASVPTPV LVENWPTEQHSFGQVTAVAVDPQGSPVVFHRAERYWDVNTFNESNIYYLI EYGPIKENTIYVLDAKTGAIKSGWGSNMFYMPHGLTIDLHGNYWITDVAM HQAFKAALQQQASADHWQALQARIIRQASVQAHIHCSGDHRRVLHRRWLL QQPHT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pal2-PE | 406 | CG5472-PE | 1..205 | 1..205 | 1078 | 100 | Plus |
Pal2-PD | 406 | CG5472-PD | 1..205 | 1..205 | 1078 | 100 | Plus |
Pal2-PA | 406 | CG5472-PA | 1..205 | 1..205 | 1078 | 100 | Plus |
Pal1-PC | 511 | CG12130-PC | 74..201 | 63..205 | 293 | 40.6 | Plus |
Pal1-PA | 541 | CG12130-PA | 74..201 | 63..205 | 293 | 40.6 | Plus |