BDGP Sequence Production Resources |
Search the DGRC for RH26053
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 260 |
Well: | 53 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Aplip1-RA |
Protein status: | RH26053.pep: gold |
Preliminary Size: | 1731 |
Sequenced Size: | 2291 |
Gene | Date | Evidence |
---|---|---|
CG1200 | 2002-10-17 | Blastp of sequenced clone |
Aplip1 | 2008-04-29 | Release 5.5 accounting |
Aplip1 | 2008-08-15 | Release 5.9 accounting |
Aplip1 | 2008-12-18 | 5.12 accounting |
2291 bp (2291 high quality bases) assembled on 2002-10-17
GenBank Submission: BT001795
> RH26053.complete GATCGATTTTCGCATGTGAAGTGAAAAAAGTGACTCCGTTGGCAAAAAAC TGTAGCGCGAGCAGGACTCCAGTGAAAATCTAACCAAAAGCAGTTCACAC GGACTAACTAAAAGCCCCAGCTAGCCTGTAGTGGAGGGCGTGGCAGCTGG TCGGACCCTGGTCCCCAAACGACATGGCCGACAGCGAATTCGAGGAGTTC CACAGGCCCATATTTGAGCCACATACGATTGCTGGATTCGGATCAGGAGC AGGCAGCAAGAAGAATAATCCACATGCATTTTACTCCTTAATTCCCAACG ATGACCTGGAGGACTCGCACTCCTCGAAGAGCGATGGCGACGGTTCGGAT CAGGAGGATGGCATTGGTCTTGTGGATCACGAGCCCAAGATGCGTCAAGT GGAGGACGATGAGCTGGGCGACGGGCTGAAAGTCACTCTGTCCTCGGACG GCTCGCTGGACACCAACGACTCGTTTAATTCGCACCGACATCATCCGTTG AACCACCAGGATGCGATTGGTGGCTTCCTGGGCATGGACACCAGTGGATT GGGTGGCAATAGTGCACCTGTGACCATTGGAGCCAGCACAGATCTGCTGG CACCCAATACAGCTGCCACGCGACGTCGTCGCAAGTTGCCGGAAATACCG AAAAACAAGAAATGTGGCTCCAACTTTGGCTCCCTGGCGGATGAGTTCCG CAACGGTGGTGGTGGAGGAATCCCTCCAGCAGTTCGCAGTGGACAACAGC GCTCATTTCTGTCCCTCAAATGCGGCTACTTGATGGACGAGGACTCCAGT CCGGATTCGGAAAGGATGCAGAGTCTGGGCGACGTGGACAGTGGTCACAG CACGGCGCATTCGCCCAACGACTTTAAGAGCATGTCGCCGCAGATCACGT CTCCCGTTTCGCAGTCCCCCTTTCCGCCTCCCTTTGGGGGCGTGCCCTTT GGCCAGCTGGAGATGCTGGAGGCCACTCACCGTGGTCTGCACAAGTTTGT GCCGCGGCACCACGACGAGATCGAGCTGGAGATCGGCGACGCCATCTACG TGCAAAAGGAGGCCGAGGACCTGTGGTGCGAGGGTGTGAATCTCCGCACC GGAAGGCAGGGCATCTTCCCCTCGGCCTACGCCGTGGACCTGGACTACAA CGAGTTCGATCCCACAGTGCAGCTGGTGAAGAAGGAGCGCTATCTGCTGG GCTACCTCGGATCCGTGGAGACGCTGGCGCACAAGGGCACCGGAGTCGTT TGCCAGGCGGTGCGCAAGATTGTCGGGGAGTACGGCAACTCACCGACCGG ACAGACGTGCATCCTGGAGGTTTCCGACCAGGGACTTCGCATGGTGGATC GATCGGGCCCGAATCAAAACAAAAAGGACAAGAAACCTTGCATCGACTAC TTCTACTCCCTGAAGAACGTCTCCTTCTGCGCATTTCACCCTCGCGATCA CCGCTTCATTGGCTTCATCACCAAACATCCCACGGTTCAGCGGTTCGCCT GCCACGTCTTCAAGGGCTCGGAGTCGACCAGACCGGTGGCCGAGGCAGTG GGCCGTGCTTTCCAGCGATTCTATCAGAAATTCATTGAAACCGCTTATCC CATCGAGGACATCTACATTGAGTAGGCTTGCAAGGCGGTTTGTGCATTAA TCAATACGATATATTTTTTGTGCGGTTATTACGAATAAAAGCAAAGATAA GTCTCAAGAATATTTGCTCTTCTTCAAAGAGAATCTCAAAGCAAAATCAA TAAGCTCGCAATAGAAACCCTAGCTATAGATTATTATCATTTATCCGTTT TGAACAAATGTGCAAGATCTTAGACATGTAAATAGTTAGTTAACTTTCGT TCAAAATCCCCACTTCACACTCACACTCACACTGAGCTTCAAGCAATCAG CAATAGTTGCCCCCTCTATAGGAACCGCCTTTAAACTCGAGTTCACTGGA TATATGGACAGAAGCAAAAGAACACCTTGAACACCTTGAATTTTGTATCG GGAGTCAGTTGGGTCAGTTGGGTCTATTGTAAATCGGAGATAAGCAATTT GGATTGGTTATAGATATCCAGACCCTCCTGTAACCACATCCTTAACCTGG CAATGCACAAAATAGATTACCAGAGACTCAACAATATCGAACACCAGCTG CTACGTTTTGAAGTATTCTCAATTAAAGCCCAGTATAAGATGTGTAAACC TTTAAAGTTGTGTACACGCAGGCGAATATATACTGTATATGTATACAAAA GAAATATATAAAGAACCTATAAATCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Aplip1-RA | 2324 | Aplip1-RA | 51..2324 | 2..2275 | 11370 | 100 | Plus |
Aplip1-RB | 2488 | Aplip1-RB | 813..2265 | 664..2116 | 7265 | 100 | Plus |
Aplip1-RB | 2488 | Aplip1-RB | 130..791 | 2..663 | 3310 | 100 | Plus |
Aplip1-RB | 2488 | Aplip1-RB | 2328..2488 | 2117..2277 | 805 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 1197061..1197761 | 664..1364 | 3460 | 99.6 | Plus |
chr3L | 24539361 | chr3L | 1198089..1198651 | 1554..2116 | 2755 | 99.3 | Plus |
chr3L | 24539361 | chr3L | 1196469..1196846 | 288..665 | 1875 | 99.7 | Plus |
chr3L | 24539361 | chr3L | 1195910..1196194 | 2..286 | 1380 | 98.9 | Plus |
chr3L | 24539361 | chr3L | 1197832..1198019 | 1365..1552 | 940 | 100 | Plus |
chr3L | 24539361 | chr3L | 1198714..1198872 | 2117..2275 | 765 | 98.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 1197530..1198230 | 664..1364 | 3505 | 100 | Plus |
3L | 28110227 | 3L | 1198554..1199118 | 1552..2116 | 2825 | 100 | Plus |
3L | 28110227 | 3L | 1196937..1197315 | 287..665 | 1895 | 100 | Plus |
3L | 28110227 | 3L | 1196371..1196655 | 2..286 | 1425 | 100 | Plus |
3L | 28110227 | 3L | 1198299..1198486 | 1365..1552 | 940 | 100 | Plus |
3L | 28110227 | 3L | 1199181..1199342 | 2117..2278 | 810 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 1197530..1198230 | 664..1364 | 3505 | 100 | Plus |
3L | 28103327 | 3L | 1198554..1199118 | 1552..2116 | 2825 | 100 | Plus |
3L | 28103327 | 3L | 1196937..1197315 | 287..665 | 1895 | 100 | Plus |
3L | 28103327 | 3L | 1196371..1196655 | 2..286 | 1425 | 100 | Plus |
3L | 28103327 | 3L | 1198299..1198486 | 1365..1552 | 940 | 100 | Plus |
3L | 28103327 | 3L | 1199181..1199342 | 2117..2278 | 810 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 1195909..1196194 | 1..286 | 98 | -> | Plus |
chr3L | 1196468..1196844 | 287..663 | 99 | -> | Plus |
chr3L | 1197061..1197761 | 664..1364 | 99 | -> | Plus |
chr3L | 1197832..1198019 | 1365..1552 | 100 | -> | Plus |
chr3L | 1198088..1198651 | 1553..2116 | 99 | -> | Plus |
chr3L | 1198714..1198872 | 2117..2275 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Aplip1-RA | 1..1452 | 174..1625 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Aplip1-RA | 1..1452 | 174..1625 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Aplip1-RA | 1..1452 | 174..1625 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Aplip1-RA | 1..1452 | 174..1625 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Aplip1-RA | 1..1452 | 174..1625 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Aplip1-RA | 50..2165 | 1..2116 | 99 | -> | Plus |
Aplip1-RA | 2228..2386 | 2117..2275 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Aplip1-RA | 50..2324 | 1..2275 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Aplip1-RA | 2232..2390 | 2117..2275 | 100 | Plus | |
Aplip1-RA | 54..2169 | 1..2116 | 99 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Aplip1-RA | 50..2165 | 1..2116 | 99 | -> | Plus |
Aplip1-RA | 2228..2386 | 2117..2275 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Aplip1-RA | 54..2169 | 1..2116 | 99 | -> | Plus |
Aplip1-RA | 2232..2390 | 2117..2275 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 1198555..1199118 | 1553..2116 | 100 | -> | Plus |
3L | 1199181..1199339 | 2117..2275 | 100 | Plus | |
3L | 1196370..1196655 | 1..286 | 99 | -> | Plus |
3L | 1196937..1197313 | 287..663 | 100 | -> | Plus |
3L | 1197530..1198230 | 664..1364 | 100 | -> | Plus |
3L | 1198299..1198486 | 1365..1552 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 1198555..1199118 | 1553..2116 | 100 | -> | Plus |
3L | 1199181..1199339 | 2117..2275 | 100 | Plus | |
3L | 1196370..1196655 | 1..286 | 99 | -> | Plus |
3L | 1196937..1197313 | 287..663 | 100 | -> | Plus |
3L | 1197530..1198230 | 664..1364 | 100 | -> | Plus |
3L | 1198299..1198486 | 1365..1552 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 1198555..1199118 | 1553..2116 | 100 | -> | Plus |
3L | 1199181..1199339 | 2117..2275 | 100 | Plus | |
3L | 1196370..1196655 | 1..286 | 99 | -> | Plus |
3L | 1196937..1197313 | 287..663 | 100 | -> | Plus |
3L | 1197530..1198230 | 664..1364 | 100 | -> | Plus |
3L | 1198299..1198486 | 1365..1552 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 1196370..1196655 | 1..286 | 99 | -> | Plus |
arm_3L | 1196937..1197313 | 287..663 | 100 | -> | Plus |
arm_3L | 1197530..1198230 | 664..1364 | 100 | -> | Plus |
arm_3L | 1198299..1198486 | 1365..1552 | 100 | -> | Plus |
arm_3L | 1198555..1199118 | 1553..2116 | 100 | -> | Plus |
arm_3L | 1199181..1199339 | 2117..2275 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 1196370..1196655 | 1..286 | 99 | -> | Plus |
3L | 1196937..1197313 | 287..663 | 100 | -> | Plus |
3L | 1197530..1198230 | 664..1364 | 100 | -> | Plus |
3L | 1198299..1198486 | 1365..1552 | 100 | -> | Plus |
3L | 1198555..1199118 | 1553..2116 | 100 | -> | Plus |
3L | 1199181..1199339 | 2117..2275 | 100 | Plus |
Translation from 173 to 1624
> RH26053.pep MADSEFEEFHRPIFEPHTIAGFGSGAGSKKNNPHAFYSLIPNDDLEDSHS SKSDGDGSDQEDGIGLVDHEPKMRQVEDDELGDGLKVTLSSDGSLDTNDS FNSHRHHPLNHQDAIGGFLGMDTSGLGGNSAPVTIGASTDLLAPNTAATR RRRKLPEIPKNKKCGSNFGSLADEFRNGGGGGIPPAVRSGQQRSFLSLKC GYLMDEDSSPDSERMQSLGDVDSGHSTAHSPNDFKSMSPQITSPVSQSPF PPPFGGVPFGQLEMLEATHRGLHKFVPRHHDEIELEIGDAIYVQKEAEDL WCEGVNLRTGRQGIFPSAYAVDLDYNEFDPTVQLVKKERYLLGYLGSVET LAHKGTGVVCQAVRKIVGEYGNSPTGQTCILEVSDQGLRMVDRSGPNQNK KDKKPCIDYFYSLKNVSFCAFHPRDHRFIGFITKHPTVQRFACHVFKGSE STRPVAEAVGRAFQRFYQKFIETAYPIEDIYIE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24433-PA | 497 | GF24433-PA | 1..497 | 1..483 | 2272 | 91.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14757-PA | 490 | GG14757-PA | 1..490 | 1..483 | 2551 | 97.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15822-PA | 482 | GH15822-PA | 1..482 | 1..483 | 2093 | 85.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Aplip1-PA | 483 | CG1200-PA | 1..483 | 1..483 | 2582 | 100 | Plus |
Aplip1-PB | 490 | CG1200-PB | 1..490 | 1..483 | 2554 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12603-PA | 487 | GI12603-PA | 1..487 | 1..483 | 2085 | 83.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20958-PA | 466 | GL20958-PA | 1..466 | 30..483 | 2078 | 89.8 | Plus |
Dper\GL15754-PA | 466 | GL15754-PA | 1..466 | 30..483 | 2066 | 89.1 | Plus |
Dper\GL20960-PA | 559 | GL20960-PA | 97..559 | 27..483 | 2048 | 89.5 | Plus |
Dper\GL15408-PA | 444 | GL15408-PA | 1..444 | 45..483 | 2018 | 91.1 | Plus |
Dper\GL17806-PA | 444 | GL17806-PA | 1..444 | 45..483 | 2003 | 90.6 | Plus |
Dper\GL20960-PA | 559 | GL20960-PA | 47..109 | 398..460 | 347 | 96.8 | Plus |
Dper\GL20960-PA | 559 | GL20960-PA | 1..82 | 45..123 | 160 | 50.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11322-PA | 489 | GA11322-PA | 1..489 | 1..483 | 2230 | 90.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14376-PA | 483 | GM14376-PA | 1..483 | 1..483 | 2501 | 96.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12726-PA | 501 | GJ12726-PA | 1..501 | 1..483 | 2093 | 80.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17331-PA | 507 | GK17331-PA | 1..507 | 1..483 | 2014 | 82.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE21120-PA | 492 | GE21120-PA | 1..492 | 1..483 | 2530 | 97.2 | Plus |
Translation from 173 to 1624
> RH26053.hyp MADSEFEEFHRPIFEPHTIAGFGSGAGSKKNNPHAFYSLIPNDDLEDSHS SKSDGDGSDQEDGIGLVDHEPKMRQVEDDELGDGLKVTLSSDGSLDTNDS FNSHRHHPLNHQDAIGGFLGMDTSGLGGNSAPVTIGASTDLLAPNTAATR RRRKLPEIPKNKKCGSNFGSLADEFRNGGGGGIPPAVRSGQQRSFLSLKC GYLMDEDSSPDSERMQSLGDVDSGHSTAHSPNDFKSMSPQITSPVSQSPF PPPFGGVPFGQLEMLEATHRGLHKFVPRHHDEIELEIGDAIYVQKEAEDL WCEGVNLRTGRQGIFPSAYAVDLDYNEFDPTVQLVKKERYLLGYLGSVET LAHKGTGVVCQAVRKIVGEYGNSPTGQTCILEVSDQGLRMVDRSGPNQNK KDKKPCIDYFYSLKNVSFCAFHPRDHRFIGFITKHPTVQRFACHVFKGSE STRPVAEAVGRAFQRFYQKFIETAYPIEDIYIE*