Clone RH26053 Report

Search the DGRC for RH26053

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:260
Well:53
Vector:pFlc-1
Associated Gene/TranscriptAplip1-RA
Protein status:RH26053.pep: gold
Preliminary Size:1731
Sequenced Size:2291

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1200 2002-10-17 Blastp of sequenced clone
Aplip1 2008-04-29 Release 5.5 accounting
Aplip1 2008-08-15 Release 5.9 accounting
Aplip1 2008-12-18 5.12 accounting

Clone Sequence Records

RH26053.complete Sequence

2291 bp (2291 high quality bases) assembled on 2002-10-17

GenBank Submission: BT001795

> RH26053.complete
GATCGATTTTCGCATGTGAAGTGAAAAAAGTGACTCCGTTGGCAAAAAAC
TGTAGCGCGAGCAGGACTCCAGTGAAAATCTAACCAAAAGCAGTTCACAC
GGACTAACTAAAAGCCCCAGCTAGCCTGTAGTGGAGGGCGTGGCAGCTGG
TCGGACCCTGGTCCCCAAACGACATGGCCGACAGCGAATTCGAGGAGTTC
CACAGGCCCATATTTGAGCCACATACGATTGCTGGATTCGGATCAGGAGC
AGGCAGCAAGAAGAATAATCCACATGCATTTTACTCCTTAATTCCCAACG
ATGACCTGGAGGACTCGCACTCCTCGAAGAGCGATGGCGACGGTTCGGAT
CAGGAGGATGGCATTGGTCTTGTGGATCACGAGCCCAAGATGCGTCAAGT
GGAGGACGATGAGCTGGGCGACGGGCTGAAAGTCACTCTGTCCTCGGACG
GCTCGCTGGACACCAACGACTCGTTTAATTCGCACCGACATCATCCGTTG
AACCACCAGGATGCGATTGGTGGCTTCCTGGGCATGGACACCAGTGGATT
GGGTGGCAATAGTGCACCTGTGACCATTGGAGCCAGCACAGATCTGCTGG
CACCCAATACAGCTGCCACGCGACGTCGTCGCAAGTTGCCGGAAATACCG
AAAAACAAGAAATGTGGCTCCAACTTTGGCTCCCTGGCGGATGAGTTCCG
CAACGGTGGTGGTGGAGGAATCCCTCCAGCAGTTCGCAGTGGACAACAGC
GCTCATTTCTGTCCCTCAAATGCGGCTACTTGATGGACGAGGACTCCAGT
CCGGATTCGGAAAGGATGCAGAGTCTGGGCGACGTGGACAGTGGTCACAG
CACGGCGCATTCGCCCAACGACTTTAAGAGCATGTCGCCGCAGATCACGT
CTCCCGTTTCGCAGTCCCCCTTTCCGCCTCCCTTTGGGGGCGTGCCCTTT
GGCCAGCTGGAGATGCTGGAGGCCACTCACCGTGGTCTGCACAAGTTTGT
GCCGCGGCACCACGACGAGATCGAGCTGGAGATCGGCGACGCCATCTACG
TGCAAAAGGAGGCCGAGGACCTGTGGTGCGAGGGTGTGAATCTCCGCACC
GGAAGGCAGGGCATCTTCCCCTCGGCCTACGCCGTGGACCTGGACTACAA
CGAGTTCGATCCCACAGTGCAGCTGGTGAAGAAGGAGCGCTATCTGCTGG
GCTACCTCGGATCCGTGGAGACGCTGGCGCACAAGGGCACCGGAGTCGTT
TGCCAGGCGGTGCGCAAGATTGTCGGGGAGTACGGCAACTCACCGACCGG
ACAGACGTGCATCCTGGAGGTTTCCGACCAGGGACTTCGCATGGTGGATC
GATCGGGCCCGAATCAAAACAAAAAGGACAAGAAACCTTGCATCGACTAC
TTCTACTCCCTGAAGAACGTCTCCTTCTGCGCATTTCACCCTCGCGATCA
CCGCTTCATTGGCTTCATCACCAAACATCCCACGGTTCAGCGGTTCGCCT
GCCACGTCTTCAAGGGCTCGGAGTCGACCAGACCGGTGGCCGAGGCAGTG
GGCCGTGCTTTCCAGCGATTCTATCAGAAATTCATTGAAACCGCTTATCC
CATCGAGGACATCTACATTGAGTAGGCTTGCAAGGCGGTTTGTGCATTAA
TCAATACGATATATTTTTTGTGCGGTTATTACGAATAAAAGCAAAGATAA
GTCTCAAGAATATTTGCTCTTCTTCAAAGAGAATCTCAAAGCAAAATCAA
TAAGCTCGCAATAGAAACCCTAGCTATAGATTATTATCATTTATCCGTTT
TGAACAAATGTGCAAGATCTTAGACATGTAAATAGTTAGTTAACTTTCGT
TCAAAATCCCCACTTCACACTCACACTCACACTGAGCTTCAAGCAATCAG
CAATAGTTGCCCCCTCTATAGGAACCGCCTTTAAACTCGAGTTCACTGGA
TATATGGACAGAAGCAAAAGAACACCTTGAACACCTTGAATTTTGTATCG
GGAGTCAGTTGGGTCAGTTGGGTCTATTGTAAATCGGAGATAAGCAATTT
GGATTGGTTATAGATATCCAGACCCTCCTGTAACCACATCCTTAACCTGG
CAATGCACAAAATAGATTACCAGAGACTCAACAATATCGAACACCAGCTG
CTACGTTTTGAAGTATTCTCAATTAAAGCCCAGTATAAGATGTGTAAACC
TTTAAAGTTGTGTACACGCAGGCGAATATATACTGTATATGTATACAAAA
GAAATATATAAAGAACCTATAAATCAAAAAAAAAAAAAAAA

RH26053.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:38:47
Subject Length Description Subject Range Query Range Score Percent Strand
Aplip1-RA 2324 Aplip1-RA 51..2324 2..2275 11370 100 Plus
Aplip1-RB 2488 Aplip1-RB 813..2265 664..2116 7265 100 Plus
Aplip1-RB 2488 Aplip1-RB 130..791 2..663 3310 100 Plus
Aplip1-RB 2488 Aplip1-RB 2328..2488 2117..2277 805 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:33:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 1197061..1197761 664..1364 3460 99.6 Plus
chr3L 24539361 chr3L 1198089..1198651 1554..2116 2755 99.3 Plus
chr3L 24539361 chr3L 1196469..1196846 288..665 1875 99.7 Plus
chr3L 24539361 chr3L 1195910..1196194 2..286 1380 98.9 Plus
chr3L 24539361 chr3L 1197832..1198019 1365..1552 940 100 Plus
chr3L 24539361 chr3L 1198714..1198872 2117..2275 765 98.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:25:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:33:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1197530..1198230 664..1364 3505 100 Plus
3L 28110227 3L 1198554..1199118 1552..2116 2825 100 Plus
3L 28110227 3L 1196937..1197315 287..665 1895 100 Plus
3L 28110227 3L 1196371..1196655 2..286 1425 100 Plus
3L 28110227 3L 1198299..1198486 1365..1552 940 100 Plus
3L 28110227 3L 1199181..1199342 2117..2278 810 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:12:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 1197530..1198230 664..1364 3505 100 Plus
3L 28103327 3L 1198554..1199118 1552..2116 2825 100 Plus
3L 28103327 3L 1196937..1197315 287..665 1895 100 Plus
3L 28103327 3L 1196371..1196655 2..286 1425 100 Plus
3L 28103327 3L 1198299..1198486 1365..1552 940 100 Plus
3L 28103327 3L 1199181..1199342 2117..2278 810 100 Plus
Blast to na_te.dros performed on 2019-03-15 14:33:53 has no hits.

RH26053.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:34:44 Download gff for RH26053.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 1195909..1196194 1..286 98 -> Plus
chr3L 1196468..1196844 287..663 99 -> Plus
chr3L 1197061..1197761 664..1364 99 -> Plus
chr3L 1197832..1198019 1365..1552 100 -> Plus
chr3L 1198088..1198651 1553..2116 99 -> Plus
chr3L 1198714..1198872 2117..2275 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:43:59 Download gff for RH26053.complete
Subject Subject Range Query Range Percent Splice Strand
Aplip1-RA 1..1452 174..1625 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:10:44 Download gff for RH26053.complete
Subject Subject Range Query Range Percent Splice Strand
Aplip1-RA 1..1452 174..1625 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:34:59 Download gff for RH26053.complete
Subject Subject Range Query Range Percent Splice Strand
Aplip1-RA 1..1452 174..1625 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:01:34 Download gff for RH26053.complete
Subject Subject Range Query Range Percent Splice Strand
Aplip1-RA 1..1452 174..1625 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:03:09 Download gff for RH26053.complete
Subject Subject Range Query Range Percent Splice Strand
Aplip1-RA 1..1452 174..1625 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:32:10 Download gff for RH26053.complete
Subject Subject Range Query Range Percent Splice Strand
Aplip1-RA 50..2165 1..2116 99 -> Plus
Aplip1-RA 2228..2386 2117..2275 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:10:44 Download gff for RH26053.complete
Subject Subject Range Query Range Percent Splice Strand
Aplip1-RA 50..2324 1..2275 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:34:59 Download gff for RH26053.complete
Subject Subject Range Query Range Percent Splice Strand
Aplip1-RA 2232..2390 2117..2275 100   Plus
Aplip1-RA 54..2169 1..2116 99 -> Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:01:35 Download gff for RH26053.complete
Subject Subject Range Query Range Percent Splice Strand
Aplip1-RA 50..2165 1..2116 99 -> Plus
Aplip1-RA 2228..2386 2117..2275 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:03:09 Download gff for RH26053.complete
Subject Subject Range Query Range Percent Splice Strand
Aplip1-RA 54..2169 1..2116 99 -> Plus
Aplip1-RA 2232..2390 2117..2275 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:34:44 Download gff for RH26053.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1198555..1199118 1553..2116 100 -> Plus
3L 1199181..1199339 2117..2275 100   Plus
3L 1196370..1196655 1..286 99 -> Plus
3L 1196937..1197313 287..663 100 -> Plus
3L 1197530..1198230 664..1364 100 -> Plus
3L 1198299..1198486 1365..1552 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:34:44 Download gff for RH26053.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1198555..1199118 1553..2116 100 -> Plus
3L 1199181..1199339 2117..2275 100   Plus
3L 1196370..1196655 1..286 99 -> Plus
3L 1196937..1197313 287..663 100 -> Plus
3L 1197530..1198230 664..1364 100 -> Plus
3L 1198299..1198486 1365..1552 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:34:44 Download gff for RH26053.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1198555..1199118 1553..2116 100 -> Plus
3L 1199181..1199339 2117..2275 100   Plus
3L 1196370..1196655 1..286 99 -> Plus
3L 1196937..1197313 287..663 100 -> Plus
3L 1197530..1198230 664..1364 100 -> Plus
3L 1198299..1198486 1365..1552 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:34:59 Download gff for RH26053.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1196370..1196655 1..286 99 -> Plus
arm_3L 1196937..1197313 287..663 100 -> Plus
arm_3L 1197530..1198230 664..1364 100 -> Plus
arm_3L 1198299..1198486 1365..1552 100 -> Plus
arm_3L 1198555..1199118 1553..2116 100 -> Plus
arm_3L 1199181..1199339 2117..2275 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:33:13 Download gff for RH26053.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1196370..1196655 1..286 99 -> Plus
3L 1196937..1197313 287..663 100 -> Plus
3L 1197530..1198230 664..1364 100 -> Plus
3L 1198299..1198486 1365..1552 100 -> Plus
3L 1198555..1199118 1553..2116 100 -> Plus
3L 1199181..1199339 2117..2275 100   Plus

RH26053.pep Sequence

Translation from 173 to 1624

> RH26053.pep
MADSEFEEFHRPIFEPHTIAGFGSGAGSKKNNPHAFYSLIPNDDLEDSHS
SKSDGDGSDQEDGIGLVDHEPKMRQVEDDELGDGLKVTLSSDGSLDTNDS
FNSHRHHPLNHQDAIGGFLGMDTSGLGGNSAPVTIGASTDLLAPNTAATR
RRRKLPEIPKNKKCGSNFGSLADEFRNGGGGGIPPAVRSGQQRSFLSLKC
GYLMDEDSSPDSERMQSLGDVDSGHSTAHSPNDFKSMSPQITSPVSQSPF
PPPFGGVPFGQLEMLEATHRGLHKFVPRHHDEIELEIGDAIYVQKEAEDL
WCEGVNLRTGRQGIFPSAYAVDLDYNEFDPTVQLVKKERYLLGYLGSVET
LAHKGTGVVCQAVRKIVGEYGNSPTGQTCILEVSDQGLRMVDRSGPNQNK
KDKKPCIDYFYSLKNVSFCAFHPRDHRFIGFITKHPTVQRFACHVFKGSE
STRPVAEAVGRAFQRFYQKFIETAYPIEDIYIE*

RH26053.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:14:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24433-PA 497 GF24433-PA 1..497 1..483 2272 91.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:14:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14757-PA 490 GG14757-PA 1..490 1..483 2551 97.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:14:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15822-PA 482 GH15822-PA 1..482 1..483 2093 85.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:39
Subject Length Description Subject Range Query Range Score Percent Strand
Aplip1-PA 483 CG1200-PA 1..483 1..483 2582 100 Plus
Aplip1-PB 490 CG1200-PB 1..490 1..483 2554 98.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:14:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12603-PA 487 GI12603-PA 1..487 1..483 2085 83.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:14:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20958-PA 466 GL20958-PA 1..466 30..483 2078 89.8 Plus
Dper\GL15754-PA 466 GL15754-PA 1..466 30..483 2066 89.1 Plus
Dper\GL20960-PA 559 GL20960-PA 97..559 27..483 2048 89.5 Plus
Dper\GL15408-PA 444 GL15408-PA 1..444 45..483 2018 91.1 Plus
Dper\GL17806-PA 444 GL17806-PA 1..444 45..483 2003 90.6 Plus
Dper\GL20960-PA 559 GL20960-PA 47..109 398..460 347 96.8 Plus
Dper\GL20960-PA 559 GL20960-PA 1..82 45..123 160 50.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:14:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11322-PA 489 GA11322-PA 1..489 1..483 2230 90.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:14:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14376-PA 483 GM14376-PA 1..483 1..483 2501 96.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:14:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12726-PA 501 GJ12726-PA 1..501 1..483 2093 80.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:14:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17331-PA 507 GK17331-PA 1..507 1..483 2014 82.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:14:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21120-PA 492 GE21120-PA 1..492 1..483 2530 97.2 Plus

RH26053.hyp Sequence

Translation from 173 to 1624

> RH26053.hyp
MADSEFEEFHRPIFEPHTIAGFGSGAGSKKNNPHAFYSLIPNDDLEDSHS
SKSDGDGSDQEDGIGLVDHEPKMRQVEDDELGDGLKVTLSSDGSLDTNDS
FNSHRHHPLNHQDAIGGFLGMDTSGLGGNSAPVTIGASTDLLAPNTAATR
RRRKLPEIPKNKKCGSNFGSLADEFRNGGGGGIPPAVRSGQQRSFLSLKC
GYLMDEDSSPDSERMQSLGDVDSGHSTAHSPNDFKSMSPQITSPVSQSPF
PPPFGGVPFGQLEMLEATHRGLHKFVPRHHDEIELEIGDAIYVQKEAEDL
WCEGVNLRTGRQGIFPSAYAVDLDYNEFDPTVQLVKKERYLLGYLGSVET
LAHKGTGVVCQAVRKIVGEYGNSPTGQTCILEVSDQGLRMVDRSGPNQNK
KDKKPCIDYFYSLKNVSFCAFHPRDHRFIGFITKHPTVQRFACHVFKGSE
STRPVAEAVGRAFQRFYQKFIETAYPIEDIYIE*

RH26053.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:25:58
Subject Length Description Subject Range Query Range Score Percent Strand
Aplip1-PA 483 CG1200-PA 1..483 1..483 2582 100 Plus
Aplip1-PB 490 CG1200-PB 1..490 1..483 2554 98.4 Plus