Clone RH26459 Report

Search the DGRC for RH26459

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:264
Well:59
Vector:pFlc-1
Associated Gene/Transcriptcpx-RU
Protein status:RH26459.pep: gold
Sequenced Size:3562

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32490 2002-10-28 Blastp of sequenced clone
cpx 2008-04-29 Release 5.5 accounting
cpx 2008-08-15 Release 5.9 accounting
cpx 2008-12-18 5.12 accounting

Clone Sequence Records

RH26459.complete Sequence

3562 bp (3562 high quality bases) assembled on 2002-10-28

GenBank Submission: BT001797

> RH26459.complete
GACTGTGAACAACTAAACGACGCCTTCTGTGTCTCTGTTTGTCTTTCAGG
AAGCCTATCTGCCTAATGCACGCTCTTCACAGTGGATTTCCTTAGAACAA
ACACATTTCGCGCAGACTAGTCGGAACTTTGCTCCTCATCAACCAAGTCC
ACGCACTCACAGGAATCTTCAAGCAAAATCTGAAAGGAATACTTGCTGAA
CTAAGGCCAGCTTACCGAGCACCCAGGACCCAGCAACCGGGACTCAGGAG
CCAGCGCGGACACAAGTGCATCTCTTCGAGCGGAAGCAGAGGACCACAAC
CAGGCGCAGCCACGCCCCTAGAGCGACAGCCCAAAGATGGCGGCCTTCAT
AGCTAAGCAGATGGTTGGAAACCAATTAAGTGCCGTTAAAGATGCTGCAG
GCGGAGGTGATGGAGGCGATGATGGCGACGACAAGGAAAAGGCAGAGGAG
GAGGAGAGGGAGCGTCAGGAGGCCATCAAGGAGGCCGAGGACCGCCGAAA
GGAAAAGCACCGGAAAATGGAGGAGGAGCGCGAGAAGATGAGGCAAGACA
TTCGCGATAAGTACAACATCAAGAAGAAGGAGGAGATCGTGGAGGCGGCC
CCCCAAGAAGAGCCCAATCCCCTGATGCGGAAAAAGAAGACGCCCGAGGA
ACTCGCCGCCGAAGCGGAGCAGGAAGAGCTCGACGATTTTACAAAACTGA
AAAATCAAATAGAAACGCAAGTAAATGAGCTAAAAACTCAAATAGAGGGA
AAATGTGTCATGCAGTGATATGTCAGTCACCATAATAACAGATAAATAAA
TATGATGATAAAACACGTGTAATACTGATAACATAGCCCATAAACGGAAA
TTAATTTAACTCAACTTAATATTGAATTTGTTAATATGAGATCAGTTCAT
TTACATGGGAACCATAAATGAATTAAAACTACTGCGAATCTAGAGCGTAA
TATAACTTTACCCGGCAGCAGCATAACGCCTTTTAAACACTAAATCTCAA
AATCGACGACAGCTATAATTCGAAATGCATAATCAAAATCCGAACGAGGC
GGTGAACTTTATGAATTTTAAAGTAGCTAAATCGCGTACCAAATCATTTA
AATCCCAACTATAGTGAAAGCCTTTAATAATATTCAAATCACTTTGCTAC
GATAATAATGTAATATACTCAAACCCAATATACAATACATAATCGTTGTT
TAGCTGATAACATACAACAAAAAGTAACGAAATAATGAATATATTGAATC
GGCACGATGACACTCGAATGCAAATAGAAAAAAGAATAATAAAATAACAT
AAAACAAAAATACCAATCCTAAAAAACATTAAGCCAATGGTGCGACAGAG
GAGGCTACCGAGTTTGTCGAGCCGTCGAAGTACATACATATGTTGCTGAA
ATCACACTGGACTTGAAATCCATCTATAAGTATAGATATACATATTATAA
AATAAATCGGCGAACATGTTAGAATGGTCATTCAAATACACCCGTTGTGT
ATATATGTAAATTTCAAGAATTTTACTAGGAGTAATAATACTTGCAAACG
AATTGACTGCAGGATACGTTAAAATGGCTGATTCTCTAAATTGTTTTTCA
TAACCAAGAAAAAATGGTTACAAATATATGAAAAAAGATTCAGTCAATTT
GTTTTTCAACGTTTGACTCAAACATCTTTAACAGCTGTTACATTTTGTTT
TTTTCTTATACAAACATCATACCTACACAACAATTGAGAATTTCGAACTC
TTTGAGACAGTTAATGATCTCTCTGATTGATGCTTCTGAAATAACAACAT
ATGCAAAAACACGAAACAACAACAATATCAACTATTACAACAACATCAAC
AACAATTCTACCAATTCTTCACAACTACGTCTTGATCGTCCCACTTAGAC
ATGTTCTCTCGGTGTTTTATAAGTTTCATCAACAACAGCCAGAACAACAG
CACAAGAAAACGCCTACAGCCAGTACAAGAACAACATCAACAACAACATC
AACTACAGAAGAATCCAAATATGTATTATAAGAGATGAACAATACTTTCC
AAGCAAACAGTAGATGAAAACAACAAGCTGCATGAACAACAGCATCAACT
AAATCAGATCATTGCAATTTGCAGGCCAGCATTCCCTATCTTATTTCTGA
ACATTGTGAATAAATTCGGATGTGGTTTACCAAATATGCCAAACCAAACA
GGCTCATATATATACCATACATGGTCACTAATCACCAGCAATCAAATGGC
TATATGGTGTTGCAAATGCTTTAAATAATGTACAGATCCAATAAAAAGCA
ACGAAATATGCATATACATCTGTGCAACATTCATTAGAAGTCACTTAATT
AAAGAGCTAAATATGACATTCTGTACTCACAATAGAAAGCTAAACTTCCA
AATCCCAAAAGAGAGTTTCAAGATATCAGTTAGAGCTTCGTGTCACAATG
CTTCTTAAAATTCTCAACATCATGTTTTTCATAAGTCGGTGGGACAGCGA
TAAAGCAACCAGGCTTAACGCCCTTCTCTGTCAATCTAATAAAGCAATCC
TCTAGTGCCCCTCGCTCCATACAGAGTTAGGAACGATCAAACTAATGAAT
GAATGCCTTAACGTGGCTCAAATGACTAGACCATGAATAGCGAATAGTTG
ATGATAAGAAAAGTTGATTCTACCCTAAGAAAGCAATTTGCCAGCCCTTG
CTTTGTTTCCCTATTGTCTGTTACTGAACCTGCACCCAGAAATGTATCTT
AGCTATGATCCTTTTAAACTCAAAACTAACAGTCTATAAAGAAACCGCTT
TTCAAATACTTATAGAAAATGTTTACCTAGATTCTACTATATGAATTGCG
TTTTGTCTCAGATATTTATATACGATTGAAGGCCACTTTAATTGTTCAAT
ATGGTGAACGAACTAACACATAATTAAAACCAACACAACTTATTGAAGCA
TACTATTCAATCTTAACCAAGTTTTAACGTTATCATAAATGTTTAAAGTG
TTAAATGGTTCAGCCGCTTTCGTTTTCATTTATAATTTGTTAATACTATG
TTAACGTTTAAAATATAGTATTGAAAATGTAATCATATGTATATCAGAAA
GTTCACGAAACCACAGATTATTAAATATTAATATCTATCTATATGTATGT
ATATATGTATACATGTATATATACATATATGTATATATGTATATATGTAT
GTATGTGTATATGTGTGTATGTATATATGTATATATATATATGCATATAC
ATATATGCATGTGTATATTTATATATGTGTGTGAATATGTGTAACTTAAT
AGGAAAATGAATTTAATAGAGAAACAACAGACAAAAATTATAAATAATGT
TGAAAAGAATACCATTCAAGTCATTATTAGATGTGAAAGACGTTCTATAC
CCAGCAAAACAGAAACAAAAACATAAGAAAATCGTTAATAGTTGATTAAT
TATATTGTTACTTTGAACATTTAACTAAAACGAACGAAAAACAAAAGATG
CTATAATAAAAAAGTATATATGTTTAAATATATATGAGAAACACAACAAA
AAAAAAAAAAAA

RH26459.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:37:11
Subject Length Description Subject Range Query Range Score Percent Strand
cpx-RY 3807 cpx-RY 119..3666 2..3549 17575 99.6 Plus
cpx-RA 3862 cpx-RA 177..3721 2..3549 17460 99.5 Plus
cpx.e 3814 cpx.e 173..3673 49..3549 17340 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:28:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 125510..127264 1793..3547 8610 99.4 Plus
chr3R 27901430 chr3R 123200..124305 687..1792 5515 99.9 Plus
chr3R 27901430 chr3R 108347..108555 2..210 1045 100 Plus
chr3R 27901430 chr3R 109945..110127 209..391 915 100 Plus
chr3R 27901430 chr3R 120848..121006 403..561 795 100 Plus
chr3R 27901430 chr3R 121286..121420 560..694 675 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:25:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:28:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4299790..4301546 1793..3549 8620 99.4 Plus
3R 32079331 3R 4297480..4298585 687..1792 5515 99.9 Plus
3R 32079331 3R 4282626..4282834 2..210 1045 100 Plus
3R 32079331 3R 4284224..4284406 209..391 915 100 Plus
3R 32079331 3R 4295128..4295286 403..561 795 100 Plus
3R 32079331 3R 4295566..4295700 560..694 675 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:11:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 4040621..4042377 1793..3549 8620 99.3 Plus
3R 31820162 3R 4038311..4039416 687..1792 5515 99.9 Plus
3R 31820162 3R 4023457..4023665 2..210 1045 100 Plus
3R 31820162 3R 4025055..4025237 209..391 915 100 Plus
3R 31820162 3R 4035959..4036117 403..561 795 100 Plus
3R 31820162 3R 4036397..4036531 560..694 675 100 Plus
Blast to na_te.dros performed 2019-03-16 07:28:39
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 1008..1251 3303..3056 184 56.6 Minus
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 1090..1214 1245..1125 146 60.8 Minus
rover 7318 rover ROVER 7318bp 5408..5524 1207..1328 146 62.3 Plus
Quasimodo 7387 Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. 6182..6627 2917..3347 129 53.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 8203..8392 3052..2867 128 55.5 Minus
accord2 7650 accord2 QBERT 7650bp 554..688 3534..3406 128 61.3 Minus
412 7567 412 412 7567bp 1722..1847 783..911 124 58.5 Plus

RH26459.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:29:33 Download gff for RH26459.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 108345..108555 1..210 99 -> Plus
chr3R 109947..110127 211..391 100 -> Plus
chr3R 120840..121006 392..561 96 -> Plus
chr3R 121288..121420 562..694 100 -> Plus
chr3R 123208..124305 695..1792 100 -> Plus
chr3R 125510..125643 1793..1926 68 == Plus
chr3R 125725..126847 2008..3130 100 == Plus
chr3R 126998..127264 3281..3547 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:04:15 Download gff for RH26459.complete
Subject Subject Range Query Range Percent Splice Strand
cpx-RN 1..420 337..768 97   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:08:51 Download gff for RH26459.complete
Subject Subject Range Query Range Percent Splice Strand
cpx-RY 1..432 337..768 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:44:50 Download gff for RH26459.complete
Subject Subject Range Query Range Percent Splice Strand
cpx-RU 1..432 337..768 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:59:48 Download gff for RH26459.complete
Subject Subject Range Query Range Percent Splice Strand
cpx-RN 1..420 337..768 97   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:32:23 Download gff for RH26459.complete
Subject Subject Range Query Range Percent Splice Strand
cpx-RU 1..432 337..768 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:04:15 Download gff for RH26459.complete
Subject Subject Range Query Range Percent Splice Strand
cpx-RA 88..3632 1..3547 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:08:51 Download gff for RH26459.complete
Subject Subject Range Query Range Percent Splice Strand
cpx-RY 88..3632 1..3544 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:44:50 Download gff for RH26459.complete
Subject Subject Range Query Range Percent Splice Strand
cpx-RY 88..3632 1..3544 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:59:48 Download gff for RH26459.complete
Subject Subject Range Query Range Percent Splice Strand
cpx-RA 88..3632 1..3547 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:32:23 Download gff for RH26459.complete
Subject Subject Range Query Range Percent Splice Strand
cpx-RY 2..3544 2..3544 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:29:33 Download gff for RH26459.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4282624..4282834 1..210 99 -> Plus
3R 4284226..4284406 211..391 100 -> Plus
3R 4295120..4295286 392..561 96 -> Plus
3R 4295568..4295700 562..694 100 -> Plus
3R 4297488..4298585 695..1792 100 -> Plus
3R 4299790..4301544 1793..3547 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:29:33 Download gff for RH26459.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4282624..4282834 1..210 99 -> Plus
3R 4284226..4284406 211..391 100 -> Plus
3R 4295120..4295286 392..561 96 -> Plus
3R 4295568..4295700 562..694 100 -> Plus
3R 4297488..4298585 695..1792 100 -> Plus
3R 4299790..4301544 1793..3547 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:29:33 Download gff for RH26459.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4282624..4282834 1..210 99 -> Plus
3R 4284226..4284406 211..391 100 -> Plus
3R 4295120..4295286 392..561 96 -> Plus
3R 4295568..4295700 562..694 100 -> Plus
3R 4297488..4298585 695..1792 100 -> Plus
3R 4299790..4301544 1793..3547 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:44:50 Download gff for RH26459.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 120842..121008 392..561 96 -> Plus
arm_3R 121290..121422 562..694 100 -> Plus
arm_3R 108346..108556 1..210 99 -> Plus
arm_3R 109948..110128 211..391 100 -> Plus
arm_3R 123210..124307 695..1792 100 -> Plus
arm_3R 125512..127266 1793..3547 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:31:14 Download gff for RH26459.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4023455..4023665 1..210 99 -> Plus
3R 4025057..4025237 211..391 100 -> Plus
3R 4035951..4036117 392..561 96 -> Plus
3R 4036399..4036531 562..694 100 -> Plus
3R 4038319..4039416 695..1792 100 -> Plus
3R 4040621..4042375 1793..3547 99   Plus

RH26459.hyp Sequence

Translation from 336 to 767

> RH26459.hyp
MAAFIAKQMVGNQLSAVKGAVGGDGGDDGDDKEKAEEEERERQEAIKEAE
DRRKEKHRKMEEEREKMRQDIRDKYNIKKKEEIVEAAPQEEPNPLMRKKK
TPEELAAEAEQEELDDFTKLKNQIETQVNELKTQIEGKCVMQ*

RH26459.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:41:40
Subject Length Description Subject Range Query Range Score Percent Strand
cpx-PX 142 CG32490-PX 1..142 1..142 719 100 Plus
cpx-PV 142 CG32490-PV 1..142 1..142 719 100 Plus
cpx-PH 142 CG32490-PH 1..142 1..142 719 100 Plus
cpx-PG 142 CG32490-PG 1..142 1..142 719 100 Plus
cpx-PA 142 CG32490-PA 1..142 1..142 719 100 Plus

RH26459.pep Sequence

Translation from 336 to 767

> RH26459.pep
MAAFIAKQMVGNQLSAVKDAAGGGDGGDDGDDKEKAEEEERERQEAIKEA
EDRRKEKHRKMEEEREKMRQDIRDKYNIKKKEEIVEAAPQEEPNPLMRKK
KTPEELAAEAEQEELDDFTKLKNQIETQVNELKTQIEGKCVMQ*

RH26459.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:19:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18201-PA 142 GF18201-PA 1..142 1..143 677 96.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:19:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12264-PA 142 GG12264-PA 1..142 1..143 684 97.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:19:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19100-PA 142 GH19100-PA 1..142 1..143 676 96.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:34:52
Subject Length Description Subject Range Query Range Score Percent Strand
cpx-PY 143 CG32490-PY 1..143 1..143 725 100 Plus
cpx-PU 143 CG32490-PU 1..143 1..143 725 100 Plus
cpx-PS 146 CG32490-PS 1..146 1..143 711 97.9 Plus
cpx-PX 142 CG32490-PX 1..142 1..143 696 97.9 Plus
cpx-PV 142 CG32490-PV 1..142 1..143 696 97.9 Plus
cpx-PH 142 CG32490-PH 1..142 1..143 696 97.9 Plus
cpx-PG 142 CG32490-PG 1..142 1..143 696 97.9 Plus
cpx-PA 142 CG32490-PA 1..142 1..143 696 97.9 Plus
cpx-PI 142 CG32490-PI 1..142 1..143 696 97.9 Plus
cpx-PW 139 CG32490-PW 1..139 1..143 690 97.2 Plus
cpx-PP 139 CG32490-PP 1..139 1..143 690 97.2 Plus
cpx-PO 139 CG32490-PO 1..139 1..143 690 97.2 Plus
cpx-PM 139 CG32490-PM 1..139 1..143 690 97.2 Plus
cpx-PC 139 CG32490-PC 1..139 1..143 690 97.2 Plus
cpx-PL 128 CG32490-PL 6..128 21..143 622 99.2 Plus
cpx-PAA 125 CG32490-PAA 5..125 23..143 621 100 Plus
cpx-PE 138 CG32490-PE 1..125 1..125 580 94.4 Plus
cpx-PAB 157 CG32490-PAB 1..118 1..119 575 97.5 Plus
cpx-PK 83 CG32490-PK 1..83 61..143 421 100 Plus
cpx-PJ 83 CG32490-PJ 1..83 61..143 421 100 Plus
cpx-PZ 98 CG32490-PZ 1..59 61..119 300 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:19:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10852-PA 142 GI10852-PA 1..142 1..143 677 96.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:19:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12314-PA 123 GL12314-PA 1..101 1..103 244 80.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:19:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16944-PA 142 GA16944-PA 1..142 1..143 682 97.2 Plus
Dpse\GA16944-PB 83 GA16944-PB 1..83 61..143 415 100 Plus
Dpse\GA16944-PC 138 GA16944-PC 1..125 1..125 348 91.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:19:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10742-PA 142 GM10742-PA 1..142 1..143 684 97.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:19:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19714-PA 142 GD19714-PA 1..142 1..143 684 97.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:19:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14459-PA 142 GJ14459-PA 1..142 1..143 460 94.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:19:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10950-PA 142 GK10950-PA 1..142 1..143 677 96.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:19:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25403-PA 142 GE25403-PA 1..142 1..143 681 97.2 Plus