BDGP Sequence Production Resources |
Search the DGRC for RH26459
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 264 |
Well: | 59 |
Vector: | pFlc-1 |
Associated Gene/Transcript | cpx-RU |
Protein status: | RH26459.pep: gold |
Sequenced Size: | 3562 |
Gene | Date | Evidence |
---|---|---|
CG32490 | 2002-10-28 | Blastp of sequenced clone |
cpx | 2008-04-29 | Release 5.5 accounting |
cpx | 2008-08-15 | Release 5.9 accounting |
cpx | 2008-12-18 | 5.12 accounting |
3562 bp (3562 high quality bases) assembled on 2002-10-28
GenBank Submission: BT001797
> RH26459.complete GACTGTGAACAACTAAACGACGCCTTCTGTGTCTCTGTTTGTCTTTCAGG AAGCCTATCTGCCTAATGCACGCTCTTCACAGTGGATTTCCTTAGAACAA ACACATTTCGCGCAGACTAGTCGGAACTTTGCTCCTCATCAACCAAGTCC ACGCACTCACAGGAATCTTCAAGCAAAATCTGAAAGGAATACTTGCTGAA CTAAGGCCAGCTTACCGAGCACCCAGGACCCAGCAACCGGGACTCAGGAG CCAGCGCGGACACAAGTGCATCTCTTCGAGCGGAAGCAGAGGACCACAAC CAGGCGCAGCCACGCCCCTAGAGCGACAGCCCAAAGATGGCGGCCTTCAT AGCTAAGCAGATGGTTGGAAACCAATTAAGTGCCGTTAAAGATGCTGCAG GCGGAGGTGATGGAGGCGATGATGGCGACGACAAGGAAAAGGCAGAGGAG GAGGAGAGGGAGCGTCAGGAGGCCATCAAGGAGGCCGAGGACCGCCGAAA GGAAAAGCACCGGAAAATGGAGGAGGAGCGCGAGAAGATGAGGCAAGACA TTCGCGATAAGTACAACATCAAGAAGAAGGAGGAGATCGTGGAGGCGGCC CCCCAAGAAGAGCCCAATCCCCTGATGCGGAAAAAGAAGACGCCCGAGGA ACTCGCCGCCGAAGCGGAGCAGGAAGAGCTCGACGATTTTACAAAACTGA AAAATCAAATAGAAACGCAAGTAAATGAGCTAAAAACTCAAATAGAGGGA AAATGTGTCATGCAGTGATATGTCAGTCACCATAATAACAGATAAATAAA TATGATGATAAAACACGTGTAATACTGATAACATAGCCCATAAACGGAAA TTAATTTAACTCAACTTAATATTGAATTTGTTAATATGAGATCAGTTCAT TTACATGGGAACCATAAATGAATTAAAACTACTGCGAATCTAGAGCGTAA TATAACTTTACCCGGCAGCAGCATAACGCCTTTTAAACACTAAATCTCAA AATCGACGACAGCTATAATTCGAAATGCATAATCAAAATCCGAACGAGGC GGTGAACTTTATGAATTTTAAAGTAGCTAAATCGCGTACCAAATCATTTA AATCCCAACTATAGTGAAAGCCTTTAATAATATTCAAATCACTTTGCTAC GATAATAATGTAATATACTCAAACCCAATATACAATACATAATCGTTGTT TAGCTGATAACATACAACAAAAAGTAACGAAATAATGAATATATTGAATC GGCACGATGACACTCGAATGCAAATAGAAAAAAGAATAATAAAATAACAT AAAACAAAAATACCAATCCTAAAAAACATTAAGCCAATGGTGCGACAGAG GAGGCTACCGAGTTTGTCGAGCCGTCGAAGTACATACATATGTTGCTGAA ATCACACTGGACTTGAAATCCATCTATAAGTATAGATATACATATTATAA AATAAATCGGCGAACATGTTAGAATGGTCATTCAAATACACCCGTTGTGT ATATATGTAAATTTCAAGAATTTTACTAGGAGTAATAATACTTGCAAACG AATTGACTGCAGGATACGTTAAAATGGCTGATTCTCTAAATTGTTTTTCA TAACCAAGAAAAAATGGTTACAAATATATGAAAAAAGATTCAGTCAATTT GTTTTTCAACGTTTGACTCAAACATCTTTAACAGCTGTTACATTTTGTTT TTTTCTTATACAAACATCATACCTACACAACAATTGAGAATTTCGAACTC TTTGAGACAGTTAATGATCTCTCTGATTGATGCTTCTGAAATAACAACAT ATGCAAAAACACGAAACAACAACAATATCAACTATTACAACAACATCAAC AACAATTCTACCAATTCTTCACAACTACGTCTTGATCGTCCCACTTAGAC ATGTTCTCTCGGTGTTTTATAAGTTTCATCAACAACAGCCAGAACAACAG CACAAGAAAACGCCTACAGCCAGTACAAGAACAACATCAACAACAACATC AACTACAGAAGAATCCAAATATGTATTATAAGAGATGAACAATACTTTCC AAGCAAACAGTAGATGAAAACAACAAGCTGCATGAACAACAGCATCAACT AAATCAGATCATTGCAATTTGCAGGCCAGCATTCCCTATCTTATTTCTGA ACATTGTGAATAAATTCGGATGTGGTTTACCAAATATGCCAAACCAAACA GGCTCATATATATACCATACATGGTCACTAATCACCAGCAATCAAATGGC TATATGGTGTTGCAAATGCTTTAAATAATGTACAGATCCAATAAAAAGCA ACGAAATATGCATATACATCTGTGCAACATTCATTAGAAGTCACTTAATT AAAGAGCTAAATATGACATTCTGTACTCACAATAGAAAGCTAAACTTCCA AATCCCAAAAGAGAGTTTCAAGATATCAGTTAGAGCTTCGTGTCACAATG CTTCTTAAAATTCTCAACATCATGTTTTTCATAAGTCGGTGGGACAGCGA TAAAGCAACCAGGCTTAACGCCCTTCTCTGTCAATCTAATAAAGCAATCC TCTAGTGCCCCTCGCTCCATACAGAGTTAGGAACGATCAAACTAATGAAT GAATGCCTTAACGTGGCTCAAATGACTAGACCATGAATAGCGAATAGTTG ATGATAAGAAAAGTTGATTCTACCCTAAGAAAGCAATTTGCCAGCCCTTG CTTTGTTTCCCTATTGTCTGTTACTGAACCTGCACCCAGAAATGTATCTT AGCTATGATCCTTTTAAACTCAAAACTAACAGTCTATAAAGAAACCGCTT TTCAAATACTTATAGAAAATGTTTACCTAGATTCTACTATATGAATTGCG TTTTGTCTCAGATATTTATATACGATTGAAGGCCACTTTAATTGTTCAAT ATGGTGAACGAACTAACACATAATTAAAACCAACACAACTTATTGAAGCA TACTATTCAATCTTAACCAAGTTTTAACGTTATCATAAATGTTTAAAGTG TTAAATGGTTCAGCCGCTTTCGTTTTCATTTATAATTTGTTAATACTATG TTAACGTTTAAAATATAGTATTGAAAATGTAATCATATGTATATCAGAAA GTTCACGAAACCACAGATTATTAAATATTAATATCTATCTATATGTATGT ATATATGTATACATGTATATATACATATATGTATATATGTATATATGTAT GTATGTGTATATGTGTGTATGTATATATGTATATATATATATGCATATAC ATATATGCATGTGTATATTTATATATGTGTGTGAATATGTGTAACTTAAT AGGAAAATGAATTTAATAGAGAAACAACAGACAAAAATTATAAATAATGT TGAAAAGAATACCATTCAAGTCATTATTAGATGTGAAAGACGTTCTATAC CCAGCAAAACAGAAACAAAAACATAAGAAAATCGTTAATAGTTGATTAAT TATATTGTTACTTTGAACATTTAACTAAAACGAACGAAAAACAAAAGATG CTATAATAAAAAAGTATATATGTTTAAATATATATGAGAAACACAACAAA AAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 125510..127264 | 1793..3547 | 8610 | 99.4 | Plus |
chr3R | 27901430 | chr3R | 123200..124305 | 687..1792 | 5515 | 99.9 | Plus |
chr3R | 27901430 | chr3R | 108347..108555 | 2..210 | 1045 | 100 | Plus |
chr3R | 27901430 | chr3R | 109945..110127 | 209..391 | 915 | 100 | Plus |
chr3R | 27901430 | chr3R | 120848..121006 | 403..561 | 795 | 100 | Plus |
chr3R | 27901430 | chr3R | 121286..121420 | 560..694 | 675 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 4299790..4301546 | 1793..3549 | 8620 | 99.4 | Plus |
3R | 32079331 | 3R | 4297480..4298585 | 687..1792 | 5515 | 99.9 | Plus |
3R | 32079331 | 3R | 4282626..4282834 | 2..210 | 1045 | 100 | Plus |
3R | 32079331 | 3R | 4284224..4284406 | 209..391 | 915 | 100 | Plus |
3R | 32079331 | 3R | 4295128..4295286 | 403..561 | 795 | 100 | Plus |
3R | 32079331 | 3R | 4295566..4295700 | 560..694 | 675 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 4040621..4042377 | 1793..3549 | 8620 | 99.3 | Plus |
3R | 31820162 | 3R | 4038311..4039416 | 687..1792 | 5515 | 99.9 | Plus |
3R | 31820162 | 3R | 4023457..4023665 | 2..210 | 1045 | 100 | Plus |
3R | 31820162 | 3R | 4025055..4025237 | 209..391 | 915 | 100 | Plus |
3R | 31820162 | 3R | 4035959..4036117 | 403..561 | 795 | 100 | Plus |
3R | 31820162 | 3R | 4036397..4036531 | 560..694 | 675 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 1008..1251 | 3303..3056 | 184 | 56.6 | Minus |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 1090..1214 | 1245..1125 | 146 | 60.8 | Minus |
rover | 7318 | rover ROVER 7318bp | 5408..5524 | 1207..1328 | 146 | 62.3 | Plus |
Quasimodo | 7387 | Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. | 6182..6627 | 2917..3347 | 129 | 53.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 8203..8392 | 3052..2867 | 128 | 55.5 | Minus |
accord2 | 7650 | accord2 QBERT 7650bp | 554..688 | 3534..3406 | 128 | 61.3 | Minus |
412 | 7567 | 412 412 7567bp | 1722..1847 | 783..911 | 124 | 58.5 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 108345..108555 | 1..210 | 99 | -> | Plus |
chr3R | 109947..110127 | 211..391 | 100 | -> | Plus |
chr3R | 120840..121006 | 392..561 | 96 | -> | Plus |
chr3R | 121288..121420 | 562..694 | 100 | -> | Plus |
chr3R | 123208..124305 | 695..1792 | 100 | -> | Plus |
chr3R | 125510..125643 | 1793..1926 | 68 | == | Plus |
chr3R | 125725..126847 | 2008..3130 | 100 | == | Plus |
chr3R | 126998..127264 | 3281..3547 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cpx-RN | 1..420 | 337..768 | 97 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cpx-RY | 1..432 | 337..768 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cpx-RU | 1..432 | 337..768 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cpx-RN | 1..420 | 337..768 | 97 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cpx-RU | 1..432 | 337..768 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cpx-RA | 88..3632 | 1..3547 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cpx-RY | 88..3632 | 1..3544 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cpx-RY | 88..3632 | 1..3544 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cpx-RA | 88..3632 | 1..3547 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cpx-RY | 2..3544 | 2..3544 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 4282624..4282834 | 1..210 | 99 | -> | Plus |
3R | 4284226..4284406 | 211..391 | 100 | -> | Plus |
3R | 4295120..4295286 | 392..561 | 96 | -> | Plus |
3R | 4295568..4295700 | 562..694 | 100 | -> | Plus |
3R | 4297488..4298585 | 695..1792 | 100 | -> | Plus |
3R | 4299790..4301544 | 1793..3547 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 4282624..4282834 | 1..210 | 99 | -> | Plus |
3R | 4284226..4284406 | 211..391 | 100 | -> | Plus |
3R | 4295120..4295286 | 392..561 | 96 | -> | Plus |
3R | 4295568..4295700 | 562..694 | 100 | -> | Plus |
3R | 4297488..4298585 | 695..1792 | 100 | -> | Plus |
3R | 4299790..4301544 | 1793..3547 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 4282624..4282834 | 1..210 | 99 | -> | Plus |
3R | 4284226..4284406 | 211..391 | 100 | -> | Plus |
3R | 4295120..4295286 | 392..561 | 96 | -> | Plus |
3R | 4295568..4295700 | 562..694 | 100 | -> | Plus |
3R | 4297488..4298585 | 695..1792 | 100 | -> | Plus |
3R | 4299790..4301544 | 1793..3547 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 120842..121008 | 392..561 | 96 | -> | Plus |
arm_3R | 121290..121422 | 562..694 | 100 | -> | Plus |
arm_3R | 108346..108556 | 1..210 | 99 | -> | Plus |
arm_3R | 109948..110128 | 211..391 | 100 | -> | Plus |
arm_3R | 123210..124307 | 695..1792 | 100 | -> | Plus |
arm_3R | 125512..127266 | 1793..3547 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 4023455..4023665 | 1..210 | 99 | -> | Plus |
3R | 4025057..4025237 | 211..391 | 100 | -> | Plus |
3R | 4035951..4036117 | 392..561 | 96 | -> | Plus |
3R | 4036399..4036531 | 562..694 | 100 | -> | Plus |
3R | 4038319..4039416 | 695..1792 | 100 | -> | Plus |
3R | 4040621..4042375 | 1793..3547 | 99 | Plus |
Translation from 336 to 767
> RH26459.hyp MAAFIAKQMVGNQLSAVKGAVGGDGGDDGDDKEKAEEEERERQEAIKEAE DRRKEKHRKMEEEREKMRQDIRDKYNIKKKEEIVEAAPQEEPNPLMRKKK TPEELAAEAEQEELDDFTKLKNQIETQVNELKTQIEGKCVMQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
cpx-PX | 142 | CG32490-PX | 1..142 | 1..142 | 719 | 100 | Plus |
cpx-PV | 142 | CG32490-PV | 1..142 | 1..142 | 719 | 100 | Plus |
cpx-PH | 142 | CG32490-PH | 1..142 | 1..142 | 719 | 100 | Plus |
cpx-PG | 142 | CG32490-PG | 1..142 | 1..142 | 719 | 100 | Plus |
cpx-PA | 142 | CG32490-PA | 1..142 | 1..142 | 719 | 100 | Plus |
Translation from 336 to 767
> RH26459.pep MAAFIAKQMVGNQLSAVKDAAGGGDGGDDGDDKEKAEEEERERQEAIKEA EDRRKEKHRKMEEEREKMRQDIRDKYNIKKKEEIVEAAPQEEPNPLMRKK KTPEELAAEAEQEELDDFTKLKNQIETQVNELKTQIEGKCVMQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18201-PA | 142 | GF18201-PA | 1..142 | 1..143 | 677 | 96.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12264-PA | 142 | GG12264-PA | 1..142 | 1..143 | 684 | 97.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19100-PA | 142 | GH19100-PA | 1..142 | 1..143 | 676 | 96.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
cpx-PY | 143 | CG32490-PY | 1..143 | 1..143 | 725 | 100 | Plus |
cpx-PU | 143 | CG32490-PU | 1..143 | 1..143 | 725 | 100 | Plus |
cpx-PS | 146 | CG32490-PS | 1..146 | 1..143 | 711 | 97.9 | Plus |
cpx-PX | 142 | CG32490-PX | 1..142 | 1..143 | 696 | 97.9 | Plus |
cpx-PV | 142 | CG32490-PV | 1..142 | 1..143 | 696 | 97.9 | Plus |
cpx-PH | 142 | CG32490-PH | 1..142 | 1..143 | 696 | 97.9 | Plus |
cpx-PG | 142 | CG32490-PG | 1..142 | 1..143 | 696 | 97.9 | Plus |
cpx-PA | 142 | CG32490-PA | 1..142 | 1..143 | 696 | 97.9 | Plus |
cpx-PI | 142 | CG32490-PI | 1..142 | 1..143 | 696 | 97.9 | Plus |
cpx-PW | 139 | CG32490-PW | 1..139 | 1..143 | 690 | 97.2 | Plus |
cpx-PP | 139 | CG32490-PP | 1..139 | 1..143 | 690 | 97.2 | Plus |
cpx-PO | 139 | CG32490-PO | 1..139 | 1..143 | 690 | 97.2 | Plus |
cpx-PM | 139 | CG32490-PM | 1..139 | 1..143 | 690 | 97.2 | Plus |
cpx-PC | 139 | CG32490-PC | 1..139 | 1..143 | 690 | 97.2 | Plus |
cpx-PL | 128 | CG32490-PL | 6..128 | 21..143 | 622 | 99.2 | Plus |
cpx-PAA | 125 | CG32490-PAA | 5..125 | 23..143 | 621 | 100 | Plus |
cpx-PE | 138 | CG32490-PE | 1..125 | 1..125 | 580 | 94.4 | Plus |
cpx-PAB | 157 | CG32490-PAB | 1..118 | 1..119 | 575 | 97.5 | Plus |
cpx-PK | 83 | CG32490-PK | 1..83 | 61..143 | 421 | 100 | Plus |
cpx-PJ | 83 | CG32490-PJ | 1..83 | 61..143 | 421 | 100 | Plus |
cpx-PZ | 98 | CG32490-PZ | 1..59 | 61..119 | 300 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10852-PA | 142 | GI10852-PA | 1..142 | 1..143 | 677 | 96.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12314-PA | 123 | GL12314-PA | 1..101 | 1..103 | 244 | 80.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA16944-PA | 142 | GA16944-PA | 1..142 | 1..143 | 682 | 97.2 | Plus |
Dpse\GA16944-PB | 83 | GA16944-PB | 1..83 | 61..143 | 415 | 100 | Plus |
Dpse\GA16944-PC | 138 | GA16944-PC | 1..125 | 1..125 | 348 | 91.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10742-PA | 142 | GM10742-PA | 1..142 | 1..143 | 684 | 97.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19714-PA | 142 | GD19714-PA | 1..142 | 1..143 | 684 | 97.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14459-PA | 142 | GJ14459-PA | 1..142 | 1..143 | 460 | 94.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK10950-PA | 142 | GK10950-PA | 1..142 | 1..143 | 677 | 96.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE25403-PA | 142 | GE25403-PA | 1..142 | 1..143 | 681 | 97.2 | Plus |