BDGP Sequence Production Resources |
Search the DGRC for RH26504
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 265 |
Well: | 4 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG5104-RB |
Protein status: | RH26504.pep: gold |
Preliminary Size: | 492 |
Sequenced Size: | 1137 |
Gene | Date | Evidence |
---|---|---|
CG5104 | 2002-01-01 | Sim4 clustering to Release 2 |
CG5104 | 2002-05-23 | Blastp of sequenced clone |
CG5104 | 2003-01-01 | Sim4 clustering to Release 3 |
CG5104 | 2008-04-29 | Release 5.5 accounting |
CG5104 | 2008-08-15 | Release 5.9 accounting |
CG5104 | 2008-12-18 | 5.12 accounting |
1137 bp (1137 high quality bases) assembled on 2002-05-23
GenBank Submission: AY118429
> RH26504.complete GACACTAGGTATGATCTTGGATTTATTTTGGTGTGAAAATTCCGGAGCAT AAAAACAGAAGAGACCCTTGTATGTGCAAAACCCCCCGAGAGGAGTGCCG GTAATTCCAAGTCAGCCACCTGTTGAACATTATTCAATCGCCGCATAATG GACAAGTTGCGCCGCGTTCTGAGTGGAGATGAGCCCACTCCGGAGGAGGA GAGCAGTATCATTACGCAGATCAACGACATGTCCACTTTGAGCTGGTCCA CTCGGATCAAGGGATTCGTCATCTGCTTTGCCTTGGGCATCTTACTTTCC CTACTCGGCTCGGTCGCCCTATTTCTGCACAGGGGCATTGTGGTCTTTGC GGTCTTCTACACTCTAGGAAACGTCATCTCGATGGCCAGTACCTGCTTTC TCATGGGTCCCTTCAAGCAGATCAAGAAAATGTTTGCGGAAACACGGCTG ATCGCCACCATCATCGTGCTCGTCATGATGGTCCTGACGTTCATCGCTGC TATTGTGTGGAAAAAGGCGGGACTCACGCTTATATTCATTATCATACAAT CTCTGGCCATGACCTGGTACTCGCTGTCGTACATCCCCTACGCCCGCGAT GCGGTCAAGAAGACCATGTCGGCAATTCTGGAGGTCTAGAATCAGATGCG CTTCTGTACATAGCTCGAGAAAAGCCAGATTGGTTTGTAGCTTAAGCTAA GACAATTAAATCTTTTGTATTGTATTAACCTAGCACTAGAACATAGAATG TCCTTTATATTCTCTTATTAACAAGTACAATAATTCCATTTTGTCTTTTT AATAAATATATATATATATATATATATATCTTTTATACATATATATATAT ATATTTACATGTTATGTATTTAATTTAATCAGTACAGTTTTCTTTAGTTT ATGTACATAATTCTCTTCTCTGTTTTGGTTTTTAATTTAAAGAATGGCCC GATCCACTTTGTTTCTGCAGCTTTAAAGTTTATTTATATCAACTTCTTAT TTTAGTTTCTTCTCTTTTTGCGGCGACAATTTACCTAGAAAAGTGAAATG AAAAATTGTAGATCAAAAGTAGCAGATATAAAAGTTAACAATAACTGGTT AGACTATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 20511144..20511747 | 507..1110 | 3020 | 100 | Plus |
chr3L | 24539361 | chr3L | 20510000..20510217 | 2..219 | 1090 | 100 | Plus |
chr3L | 24539361 | chr3L | 20510398..20510574 | 213..389 | 885 | 100 | Plus |
chr3L | 24539361 | chr3L | 20510647..20510767 | 387..507 | 605 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 20522154..20522759 | 507..1112 | 3030 | 100 | Plus |
3L | 28110227 | 3L | 20521010..20521227 | 2..219 | 1090 | 100 | Plus |
3L | 28110227 | 3L | 20521408..20521584 | 213..389 | 885 | 100 | Plus |
3L | 28110227 | 3L | 20521657..20521777 | 387..507 | 605 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 20515254..20515859 | 507..1112 | 3030 | 100 | Plus |
3L | 28103327 | 3L | 20514110..20514327 | 2..219 | 1090 | 100 | Plus |
3L | 28103327 | 3L | 20514508..20514684 | 213..389 | 885 | 100 | Plus |
3L | 28103327 | 3L | 20514757..20514877 | 387..507 | 605 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 20510405..20510574 | 220..389 | 100 | -> | Plus |
chr3L | 20510650..20510767 | 390..507 | 100 | -> | Plus |
chr3L | 20509999..20510217 | 1..219 | 99 | -> | Plus |
chr3L | 20511145..20511438 | 508..801 | 100 | == | Plus |
chr3L | 20511492..20511747 | 855..1110 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5104-RB | 1..492 | 148..639 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5104-RB | 1..492 | 148..639 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5104-RB | 1..492 | 148..639 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5104-RB | 1..492 | 148..639 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5104-RB | 1..492 | 148..639 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5104-RB | 2..1110 | 2..1110 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5104-RB | 2..1110 | 2..1110 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5104-RB | 2..788 | 2..788 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5104-RB | 2..1110 | 2..1110 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5104-RB | 2..787 | 2..787 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20521009..20521227 | 1..219 | 99 | -> | Plus |
3L | 20521415..20521584 | 220..389 | 100 | -> | Plus |
3L | 20521660..20521777 | 390..507 | 100 | -> | Plus |
3L | 20522155..20522757 | 508..1110 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20521009..20521227 | 1..219 | 99 | -> | Plus |
3L | 20521415..20521584 | 220..389 | 100 | -> | Plus |
3L | 20521660..20521777 | 390..507 | 100 | -> | Plus |
3L | 20522155..20522757 | 508..1110 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20521009..20521227 | 1..219 | 99 | -> | Plus |
3L | 20521415..20521584 | 220..389 | 100 | -> | Plus |
3L | 20521660..20521777 | 390..507 | 100 | -> | Plus |
3L | 20522155..20522757 | 508..1110 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 20514515..20514684 | 220..389 | 100 | -> | Plus |
arm_3L | 20514760..20514877 | 390..507 | 100 | -> | Plus |
arm_3L | 20514109..20514327 | 1..219 | 99 | -> | Plus |
arm_3L | 20515255..20515857 | 508..1110 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20514515..20514684 | 220..389 | 100 | -> | Plus |
3L | 20514760..20514877 | 390..507 | 100 | -> | Plus |
3L | 20514109..20514327 | 1..219 | 99 | -> | Plus |
3L | 20515255..20515857 | 508..1110 | 100 | Plus |
Translation from 147 to 638
> RH26504.pep MDKLRRVLSGDEPTPEEESSIITQINDMSTLSWSTRIKGFVICFALGILL SLLGSVALFLHRGIVVFAVFYTLGNVISMASTCFLMGPFKQIKKMFAETR LIATIIVLVMMVLTFIAAIVWKKAGLTLIFIIIQSLAMTWYSLSYIPYAR DAVKKTMSAILEV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10353-PA | 163 | GF10353-PA | 1..163 | 1..163 | 764 | 89.6 | Plus |
Dana\GF19041-PA | 163 | GF19041-PA | 1..163 | 1..163 | 756 | 89 | Plus |
Dana\GF20483-PA | 163 | GF20483-PA | 1..163 | 1..163 | 756 | 89 | Plus |
Dana\GF24537-PA | 203 | GF24537-PA | 43..184 | 15..154 | 138 | 33.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16126-PA | 163 | GG16126-PA | 1..163 | 1..163 | 828 | 97.5 | Plus |
Dere\GG24673-PA | 199 | GG24673-PA | 40..180 | 15..154 | 150 | 31.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14556-PA | 163 | GH14556-PA | 1..163 | 1..163 | 730 | 84.7 | Plus |
Dgri\GH10230-PA | 204 | GH10230-PA | 34..185 | 4..154 | 153 | 30.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5104-PB | 163 | CG5104-PB | 1..163 | 1..163 | 804 | 100 | Plus |
CG33635-PA | 199 | CG33635-PA | 40..180 | 15..154 | 170 | 31.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13404-PA | 163 | GI13404-PA | 1..163 | 1..163 | 736 | 85.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12798-PA | 163 | GL12798-PA | 1..163 | 1..163 | 760 | 89 | Plus |
Dper\GL19288-PA | 205 | GL19288-PA | 41..186 | 12..154 | 149 | 30.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18661-PA | 163 | GA18661-PA | 1..163 | 1..163 | 760 | 89 | Plus |
Dpse\GA25900-PA | 205 | GA25900-PA | 41..186 | 12..154 | 149 | 30.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22305-PA | 163 | GM22305-PA | 1..163 | 1..163 | 827 | 97.5 | Plus |
Dsec\GM16692-PA | 199 | GM16692-PA | 40..180 | 15..154 | 151 | 31.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14898-PA | 163 | GD14898-PA | 1..163 | 1..163 | 832 | 98.2 | Plus |
Dsim\GD22980-PA | 199 | GD22980-PA | 40..180 | 15..154 | 151 | 31.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11529-PA | 163 | GJ11529-PA | 1..163 | 1..163 | 718 | 82.8 | Plus |
Dvir\GJ17253-PA | 204 | GJ17253-PA | 42..185 | 11..154 | 137 | 29.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12044-PA | 163 | GK12044-PA | 1..163 | 1..163 | 706 | 89 | Plus |
Dwil\GK23762-PA | 206 | GK23762-PA | 44..185 | 15..154 | 136 | 30.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE19694-PA | 163 | GE19694-PA | 1..163 | 1..163 | 832 | 98.8 | Plus |
Dyak\GE23240-PA | 163 | GE23240-PA | 1..163 | 1..163 | 832 | 98.8 | Plus |
Dyak\GE16372-PA | 199 | GE16372-PA | 40..180 | 15..154 | 145 | 30.5 | Plus |
Translation from 147 to 638
> RH26504.hyp MDKLRRVLSGDEPTPEEESSIITQINDMSTLSWSTRIKGFVICFALGILL SLLGSVALFLHRGIVVFAVFYTLGNVISMASTCFLMGPFKQIKKMFAETR LIATIIVLVMMVLTFIAAIVWKKAGLTLIFIIIQSLAMTWYSLSYIPYAR DAVKKTMSAILEV*