Clone RH26533 Report

Search the DGRC for RH26533

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:265
Well:33
Vector:pFlc-1
Associated Gene/TranscriptCG31769-RA
Protein status:RH26533.pep: gold
Sequenced Size:1102

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31769 2001-12-13 Blastp of sequenced clone
CG15293 2002-01-01 Sim4 clustering to Release 2
CG31769 2003-01-01 Sim4 clustering to Release 3
CG31769 2008-04-29 Release 5.5 accounting
CG31769 2008-08-15 Release 5.9 accounting
CG31769 2008-12-18 5.12 accounting

Clone Sequence Records

RH26533.complete Sequence

1102 bp (1102 high quality bases) assembled on 2001-12-13

GenBank Submission: AY070692

> RH26533.complete
TTGCAGTTTCAACTAGGTACTCGAAGCGGTCGCATGTTCCGGTTTAAAAC
AAAGAATGAATTTCGAAAGTCATCTGATTGTTTGCATTAGTTTGCTTCTT
CAATTACGGATGGGAGCAACTATGCCTATGGAACGGCCACTCCCCCCCTC
TGTGTATGCACAGGCTAGGCATTGGAACGTGCTTGAAACAGTCGTAAATA
ATATGCGGATCACTAAAAGGCCGTGGATAGTTACAAAAACTAAACCGTGC
GGTGAGGTGATTAGGGAAACCTACATGTTGAGCCCCAACGAAGAGGAACT
CATAAGGAGAACGGAAGTCATGCTCTTGCAAGCTCAAGGAAAATTGGAAT
GTTTACTTAGCCAGTTTCAACCGACATTACGACTTGGCAGTGTCTACAAT
AATCCCTTTCTAAACCCGGTCGGTTTTGGTTTTCCTGACTATAACGTCTT
CCAAAATTTTCCGTTTATCCCGGAATTTAAGCCGCAACGTATTCCTCCCG
AAGAAGATCGCAGTAATGAAAATAATCCTCGCCGAGAAGATCCGCGGGTA
AATGAGCAGGATGCGTGGAATTTACGCCCTCAAGACGTCCCCAAAGAAAA
TGAACACATTCCCAATAGTGAATCGGATAGTGATAGATGGCTGCCAAATC
CAACATCCACACACCGGCCTATCGTAACTTTGCCTACCCTGGCACCCCCA
AACTTGAAGGATACGGAGCCCATATGGGTTCCAGTCCCAGAACCAACATC
AACCGAGCGAAGTTCGGTCCCGCTGCCCACGCTCGCACCCAAAGGCGACG
GAACTGACTCGACAATCGATGACTTTTTGGCAAAGGTGGATCTCACTGTC
GCGGACATCAAAGAGGAGGATGGCCAGGTGGTCACCACAATCGTGGACAA
ACAAGGACGCGTTCTAAGTGCCAGTTTTGCACTGAGCAATGAGAACGAAC
AAGGGGGTGCGGCAAACTATCAAAGTCGCACTGGAAAATGATATACATAA
ATAAAGAGATATGTGAACAAGAAAAGCTCAATTTAAATTAACAGAAAAGT
TTAGTATAAATAATATAAATAAATCTATGTTTACCGCAAAAAAAAAAAAA
AA

RH26533.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG31769-RA 1129 CG31769-RA 23..1107 4..1088 5425 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 14108361..14109339 1087..109 4820 99.5 Minus
chr2L 23010047 chr2L 14109396..14109501 109..4 530 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:25:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:50:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14109596..14110575 1088..109 4900 100 Minus
2L 23513712 2L 14110632..14110737 109..4 530 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:14:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14109596..14110575 1088..109 4900 100 Minus
2L 23513712 2L 14110632..14110737 109..4 530 100 Minus
Blast to na_te.dros performed 2019-03-16 20:50:19
Subject Length Description Subject Range Query Range Score Percent Strand
opus 7521 opus OPUS 7521bp 6113..6200 985..1074 147 65.6 Plus
copia 5143 copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). 3708..3788 997..1073 124 66.7 Plus
Dbuz\BuT2 2775 Dbuz\BuT2 BUT2 2775bp 280..353 991..1066 114 63.2 Plus

RH26533.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:51:09 Download gff for RH26533.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 14108361..14109338 110..1087 99 <- Minus
chr2L 14109396..14109503 1..109 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:44:09 Download gff for RH26533.complete
Subject Subject Range Query Range Percent Splice Strand
CG31769-RA 1..936 56..991 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:16:42 Download gff for RH26533.complete
Subject Subject Range Query Range Percent Splice Strand
CG31769-RA 1..936 56..991 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:40:29 Download gff for RH26533.complete
Subject Subject Range Query Range Percent Splice Strand
CG31769-RA 1..936 56..991 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:42:49 Download gff for RH26533.complete
Subject Subject Range Query Range Percent Splice Strand
CG31769-RA 1..936 56..991 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:56:24 Download gff for RH26533.complete
Subject Subject Range Query Range Percent Splice Strand
CG31769-RA 1..936 56..991 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:49:07 Download gff for RH26533.complete
Subject Subject Range Query Range Percent Splice Strand
CG31769-RA 1..1086 2..1087 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:16:42 Download gff for RH26533.complete
Subject Subject Range Query Range Percent Splice Strand
CG31769-RA 1..1086 2..1087 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:40:29 Download gff for RH26533.complete
Subject Subject Range Query Range Percent Splice Strand
CG31769-RA 1..1086 2..1087 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:42:49 Download gff for RH26533.complete
Subject Subject Range Query Range Percent Splice Strand
CG31769-RA 1..1086 2..1087 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:24 Download gff for RH26533.complete
Subject Subject Range Query Range Percent Splice Strand
CG31769-RA 1..1086 2..1087 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:51:09 Download gff for RH26533.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14109597..14110574 110..1087 100 <- Minus
2L 14110632..14110739 1..109 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:51:09 Download gff for RH26533.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14109597..14110574 110..1087 100 <- Minus
2L 14110632..14110739 1..109 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:51:09 Download gff for RH26533.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14109597..14110574 110..1087 100 <- Minus
2L 14110632..14110739 1..109 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:40:29 Download gff for RH26533.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14109597..14110574 110..1087 100 <- Minus
arm_2L 14110632..14110739 1..109 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:18:55 Download gff for RH26533.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14109597..14110574 110..1087 100 <- Minus
2L 14110632..14110739 1..109 99   Minus

RH26533.pep Sequence

Translation from 55 to 990

> RH26533.pep
MNFESHLIVCISLLLQLRMGATMPMERPLPPSVYAQARHWNVLETVVNNM
RITKRPWIVTKTKPCGEVIRETYMLSPNEEELIRRTEVMLLQAQGKLECL
LSQFQPTLRLGSVYNNPFLNPVGFGFPDYNVFQNFPFIPEFKPQRIPPEE
DRSNENNPRREDPRVNEQDAWNLRPQDVPKENEHIPNSESDSDRWLPNPT
STHRPIVTLPTLAPPNLKDTEPIWVPVPEPTSTERSSVPLPTLAPKGDGT
DSTIDDFLAKVDLTVADIKEEDGQVVTTIVDKQGRVLSASFALSNENEQG
GAANYQSRTGK*

RH26533.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:33:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15602-PA 359 GF15602-PA 1..343 3..294 288 31.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:33:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10161-PA 329 GG10161-PA 1..314 1..295 233 29.5 Plus
Dere\GG10160-PA 66 GG10160-PA 2..51 247..296 216 82 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:19:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG31769-PA 311 CG31769-PA 1..311 1..311 1652 100 Plus
CG15293-PC 333 CG15293-PC 1..318 1..295 226 26.2 Plus
CG15293-PA 333 CG15293-PA 1..318 1..295 226 26.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:33:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13631-PA 376 GA13631-PA 1..365 1..299 164 25.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:33:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14929-PA 311 GM14929-PA 1..311 1..311 1387 84.2 Plus
Dsec\GM14940-PA 330 GM14940-PA 1..326 1..306 250 29.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:33:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22017-PA 311 GD22017-PA 1..311 1..311 1400 84.9 Plus
Dsim\GD22018-PA 330 GD22018-PA 1..326 1..306 250 29.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:33:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25126-PA 282 GE25126-PA 1..282 1..304 805 58.7 Plus
Dyak\GE25137-PA 334 GE25137-PA 244..318 222..294 194 54.7 Plus

RH26533.hyp Sequence

Translation from 55 to 990

> RH26533.hyp
MNFESHLIVCISLLLQLRMGATMPMERPLPPSVYAQARHWNVLETVVNNM
RITKRPWIVTKTKPCGEVIRETYMLSPNEEELIRRTEVMLLQAQGKLECL
LSQFQPTLRLGSVYNNPFLNPVGFGFPDYNVFQNFPFIPEFKPQRIPPEE
DRSNENNPRREDPRVNEQDAWNLRPQDVPKENEHIPNSESDSDRWLPNPT
STHRPIVTLPTLAPPNLKDTEPIWVPVPEPTSTERSSVPLPTLAPKGDGT
DSTIDDFLAKVDLTVADIKEEDGQVVTTIVDKQGRVLSASFALSNENEQG
GAANYQSRTGK*

RH26533.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:03:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG31769-PA 311 CG31769-PA 1..311 1..311 1652 100 Plus
CG15293-PC 333 CG15293-PC 1..318 1..295 226 26.2 Plus
CG15293-PA 333 CG15293-PA 1..318 1..295 226 26.2 Plus