Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
RH26533.complete Sequence
1102 bp (1102 high quality bases) assembled on 2001-12-13
GenBank Submission: AY070692
> RH26533.complete
TTGCAGTTTCAACTAGGTACTCGAAGCGGTCGCATGTTCCGGTTTAAAAC
AAAGAATGAATTTCGAAAGTCATCTGATTGTTTGCATTAGTTTGCTTCTT
CAATTACGGATGGGAGCAACTATGCCTATGGAACGGCCACTCCCCCCCTC
TGTGTATGCACAGGCTAGGCATTGGAACGTGCTTGAAACAGTCGTAAATA
ATATGCGGATCACTAAAAGGCCGTGGATAGTTACAAAAACTAAACCGTGC
GGTGAGGTGATTAGGGAAACCTACATGTTGAGCCCCAACGAAGAGGAACT
CATAAGGAGAACGGAAGTCATGCTCTTGCAAGCTCAAGGAAAATTGGAAT
GTTTACTTAGCCAGTTTCAACCGACATTACGACTTGGCAGTGTCTACAAT
AATCCCTTTCTAAACCCGGTCGGTTTTGGTTTTCCTGACTATAACGTCTT
CCAAAATTTTCCGTTTATCCCGGAATTTAAGCCGCAACGTATTCCTCCCG
AAGAAGATCGCAGTAATGAAAATAATCCTCGCCGAGAAGATCCGCGGGTA
AATGAGCAGGATGCGTGGAATTTACGCCCTCAAGACGTCCCCAAAGAAAA
TGAACACATTCCCAATAGTGAATCGGATAGTGATAGATGGCTGCCAAATC
CAACATCCACACACCGGCCTATCGTAACTTTGCCTACCCTGGCACCCCCA
AACTTGAAGGATACGGAGCCCATATGGGTTCCAGTCCCAGAACCAACATC
AACCGAGCGAAGTTCGGTCCCGCTGCCCACGCTCGCACCCAAAGGCGACG
GAACTGACTCGACAATCGATGACTTTTTGGCAAAGGTGGATCTCACTGTC
GCGGACATCAAAGAGGAGGATGGCCAGGTGGTCACCACAATCGTGGACAA
ACAAGGACGCGTTCTAAGTGCCAGTTTTGCACTGAGCAATGAGAACGAAC
AAGGGGGTGCGGCAAACTATCAAAGTCGCACTGGAAAATGATATACATAA
ATAAAGAGATATGTGAACAAGAAAAGCTCAATTTAAATTAACAGAAAAGT
TTAGTATAAATAATATAAATAAATCTATGTTTACCGCAAAAAAAAAAAAA
AA
RH26533.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:48:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31769-RA | 1129 | CG31769-RA | 23..1107 | 4..1088 | 5425 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:50:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2L | 23010047 | chr2L | 14108361..14109339 | 1087..109 | 4820 | 99.5 | Minus |
chr2L | 23010047 | chr2L | 14109396..14109501 | 109..4 | 530 | 100 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:25:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:50:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14109596..14110575 | 1088..109 | 4900 | 100 | Minus |
2L | 23513712 | 2L | 14110632..14110737 | 109..4 | 530 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:14:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14109596..14110575 | 1088..109 | 4900 | 100 | Minus |
2L | 23513712 | 2L | 14110632..14110737 | 109..4 | 530 | 100 | Minus |
Blast to na_te.dros performed 2019-03-16 20:50:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
opus | 7521 | opus OPUS 7521bp | 6113..6200 | 985..1074 | 147 | 65.6 | Plus |
copia | 5143 | copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). | 3708..3788 | 997..1073 | 124 | 66.7 | Plus |
Dbuz\BuT2 | 2775 | Dbuz\BuT2 BUT2 2775bp | 280..353 | 991..1066 | 114 | 63.2 | Plus |
RH26533.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:51:09 Download gff for
RH26533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2L | 14108361..14109338 | 110..1087 | 99 | <- | Minus |
chr2L | 14109396..14109503 | 1..109 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:44:09 Download gff for
RH26533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31769-RA | 1..936 | 56..991 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:16:42 Download gff for
RH26533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31769-RA | 1..936 | 56..991 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:40:29 Download gff for
RH26533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31769-RA | 1..936 | 56..991 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:42:49 Download gff for
RH26533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31769-RA | 1..936 | 56..991 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:56:24 Download gff for
RH26533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31769-RA | 1..936 | 56..991 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:49:07 Download gff for
RH26533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31769-RA | 1..1086 | 2..1087 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:16:42 Download gff for
RH26533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31769-RA | 1..1086 | 2..1087 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:40:29 Download gff for
RH26533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31769-RA | 1..1086 | 2..1087 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:42:49 Download gff for
RH26533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31769-RA | 1..1086 | 2..1087 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:24 Download gff for
RH26533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31769-RA | 1..1086 | 2..1087 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:51:09 Download gff for
RH26533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14109597..14110574 | 110..1087 | 100 | <- | Minus |
2L | 14110632..14110739 | 1..109 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:51:09 Download gff for
RH26533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14109597..14110574 | 110..1087 | 100 | <- | Minus |
2L | 14110632..14110739 | 1..109 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:51:09 Download gff for
RH26533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14109597..14110574 | 110..1087 | 100 | <- | Minus |
2L | 14110632..14110739 | 1..109 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:40:29 Download gff for
RH26533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14109597..14110574 | 110..1087 | 100 | <- | Minus |
arm_2L | 14110632..14110739 | 1..109 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:18:55 Download gff for
RH26533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14109597..14110574 | 110..1087 | 100 | <- | Minus |
2L | 14110632..14110739 | 1..109 | 99 | | Minus |
RH26533.pep Sequence
Translation from 55 to 990
> RH26533.pep
MNFESHLIVCISLLLQLRMGATMPMERPLPPSVYAQARHWNVLETVVNNM
RITKRPWIVTKTKPCGEVIRETYMLSPNEEELIRRTEVMLLQAQGKLECL
LSQFQPTLRLGSVYNNPFLNPVGFGFPDYNVFQNFPFIPEFKPQRIPPEE
DRSNENNPRREDPRVNEQDAWNLRPQDVPKENEHIPNSESDSDRWLPNPT
STHRPIVTLPTLAPPNLKDTEPIWVPVPEPTSTERSSVPLPTLAPKGDGT
DSTIDDFLAKVDLTVADIKEEDGQVVTTIVDKQGRVLSASFALSNENEQG
GAANYQSRTGK*
RH26533.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:33:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF15602-PA | 359 | GF15602-PA | 1..343 | 3..294 | 288 | 31.6 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:33:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG10161-PA | 329 | GG10161-PA | 1..314 | 1..295 | 233 | 29.5 | Plus |
Dere\GG10160-PA | 66 | GG10160-PA | 2..51 | 247..296 | 216 | 82 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:19:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31769-PA | 311 | CG31769-PA | 1..311 | 1..311 | 1652 | 100 | Plus |
CG15293-PC | 333 | CG15293-PC | 1..318 | 1..295 | 226 | 26.2 | Plus |
CG15293-PA | 333 | CG15293-PA | 1..318 | 1..295 | 226 | 26.2 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:33:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA13631-PA | 376 | GA13631-PA | 1..365 | 1..299 | 164 | 25.8 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:33:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM14929-PA | 311 | GM14929-PA | 1..311 | 1..311 | 1387 | 84.2 | Plus |
Dsec\GM14940-PA | 330 | GM14940-PA | 1..326 | 1..306 | 250 | 29.5 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:33:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD22017-PA | 311 | GD22017-PA | 1..311 | 1..311 | 1400 | 84.9 | Plus |
Dsim\GD22018-PA | 330 | GD22018-PA | 1..326 | 1..306 | 250 | 29.8 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:33:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE25126-PA | 282 | GE25126-PA | 1..282 | 1..304 | 805 | 58.7 | Plus |
Dyak\GE25137-PA | 334 | GE25137-PA | 244..318 | 222..294 | 194 | 54.7 | Plus |
RH26533.hyp Sequence
Translation from 55 to 990
> RH26533.hyp
MNFESHLIVCISLLLQLRMGATMPMERPLPPSVYAQARHWNVLETVVNNM
RITKRPWIVTKTKPCGEVIRETYMLSPNEEELIRRTEVMLLQAQGKLECL
LSQFQPTLRLGSVYNNPFLNPVGFGFPDYNVFQNFPFIPEFKPQRIPPEE
DRSNENNPRREDPRVNEQDAWNLRPQDVPKENEHIPNSESDSDRWLPNPT
STHRPIVTLPTLAPPNLKDTEPIWVPVPEPTSTERSSVPLPTLAPKGDGT
DSTIDDFLAKVDLTVADIKEEDGQVVTTIVDKQGRVLSASFALSNENEQG
GAANYQSRTGK*
RH26533.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:03:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31769-PA | 311 | CG31769-PA | 1..311 | 1..311 | 1652 | 100 | Plus |
CG15293-PC | 333 | CG15293-PC | 1..318 | 1..295 | 226 | 26.2 | Plus |
CG15293-PA | 333 | CG15293-PA | 1..318 | 1..295 | 226 | 26.2 | Plus |