Clone RH27559 Report

Search the DGRC for RH27559

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:275
Well:59
Vector:pFlc-1
Associated Gene/TranscriptGstE14-RA
Protein status:RH27559.pep: gold
Preliminary Size:699
Sequenced Size:1025

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4688 2001-12-17 Blastp of sequenced clone
CG4688 2002-01-01 Sim4 clustering to Release 2
CG4688 2003-01-01 Sim4 clustering to Release 3
CG4688 2008-04-29 Release 5.5 accounting
CG4688 2008-08-15 Release 5.9 accounting
CG4688 2008-12-18 5.12 accounting

Clone Sequence Records

RH27559.complete Sequence

1025 bp (1025 high quality bases) assembled on 2001-12-17

GenBank Submission: AY071713

> RH27559.complete
GAGTTACTGATCGACTTTCAAGGCGTTCGTTTGTCTGTTTTTCTACCTGA
TCCTAACTTAATGTCTCAGCCCAAGCCGATTTTGTATTACGACGAGCGCA
GTCCGCCGGTCCGCAGTTGCCTTATGCTAATCAAATTGCTCGATATAGAT
GTGGAGCTCAGGTTTGTGAATCTCTTCAAGGGCGAGCAATTCCAAAAAGA
TTTCTTAGCGTTAAATCCCCAGCACAGTGTTCCCACCCTAGTCCACGGTG
ATCTGGTGCTGACGGACAGTCATGCTATACTCATTCACCTGGCGGAGAAG
TTCGATGAGGGCGGTAGTTTGTGGCCGCAGGAGCACGCAGAACGGATGAA
GGTTCTGAACCTCCTGCTCTTCGAGTGCTCCTTTTTGTTCCGACGTGACA
GTGATTTTATGTCGGCGACTGTCCGCCAGGGATTCGCCAATGTCGATGTG
GCACATCATGAACGCAAGCTGACCGAGGCGTATATTATCATGGAGCGTTA
CCTGGAAAATAGCGATTTTATGGCCGGGCCACAGCTGACGCTCGCCGACT
TATCCATCGTGACCACATTGAGCACCGTCAATCTCATGTTTCCCCTGTCG
CAGTTCCCACGTCTGCGGCGCTGGTTCACCGCGATGCAGCAGCTGGATGC
CTACGAGGCCAACTGCAGTGGCTTGGAGAAGCTCCGCCAAACGATGGAGA
GCGTCGGTAGCTTTCAGTTCCCATCGTCATCAGCGGTAGTCACCGAGAAG
GTGGAGTAGCACTAGAGGGTTATCAAAAGGCTTGTTTAACTAAGCATTGA
ATCGGATTTAATTTTATGGTTGGTTTGGGTTTTCTTAACCTCTTACATTT
GAATAAATTCTAAAACAATGTGTAAATTATATTTAGCAAATTCTTATATA
AGATCTAATGCAACATACAATGTGCATATGTAAAAGTCTTAACTCAAAGA
TAAATAAACCGATTCATGGCAGACAATAATAATGACTCGCCAATAGAAAT
TCATGACAGAAAAAAAAAAAAAAAA

RH27559.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:37:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG4688-RA 1051 CG4688-RA 39..1049 2..1012 5055 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:28:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 9127898..9128375 532..1009 2375 99.8 Plus
chr2R 21145070 chr2R 9127091..9127303 2..214 1050 99.5 Plus
chr2R 21145070 chr2R 9127426..9127627 210..411 1010 100 Plus
chr2R 21145070 chr2R 9127685..9127808 411..534 605 99.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:25:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:28:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13240536..13241016 532..1012 2405 100 Plus
2R 25286936 2R 13239729..13239941 2..214 1050 99.5 Plus
2R 25286936 2R 13240064..13240265 210..411 1010 100 Plus
2R 25286936 2R 13240323..13240446 411..534 620 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:04:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 13241735..13242215 532..1012 2405 100 Plus
2R 25260384 2R 13240928..13241140 2..214 1050 99.5 Plus
2R 25260384 2R 13241263..13241464 210..411 1010 100 Plus
2R 25260384 2R 13241522..13241645 411..534 620 100 Plus
Blast to na_te.dros performed 2019-03-16 07:28:47
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 41..112 824..902 117 67.1 Plus
roo 9092 roo DM_ROO 9092bp 8705..8776 824..902 117 67.1 Plus

RH27559.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:29:37 Download gff for RH27559.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 9127090..9127299 1..210 99 -> Plus
chr2R 9127427..9127627 211..411 100 -> Plus
chr2R 9127686..9127808 412..534 99 -> Plus
chr2R 9127901..9128375 535..1009 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:44:14 Download gff for RH27559.complete
Subject Subject Range Query Range Percent Splice Strand
CG4688-RA 1..699 61..759 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:00:49 Download gff for RH27559.complete
Subject Subject Range Query Range Percent Splice Strand
CG4688-RA 1..699 61..759 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:44:57 Download gff for RH27559.complete
Subject Subject Range Query Range Percent Splice Strand
GstE14-RA 1..699 61..759 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:25:28 Download gff for RH27559.complete
Subject Subject Range Query Range Percent Splice Strand
CG4688-RA 1..699 61..759 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:32:30 Download gff for RH27559.complete
Subject Subject Range Query Range Percent Splice Strand
GstE14-RA 1..699 61..759 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:26:57 Download gff for RH27559.complete
Subject Subject Range Query Range Percent Splice Strand
CG4688-RA 2..1009 2..1009 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:00:48 Download gff for RH27559.complete
Subject Subject Range Query Range Percent Splice Strand
CG4688-RA 1..1008 2..1009 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:44:57 Download gff for RH27559.complete
Subject Subject Range Query Range Percent Splice Strand
GstE14-RA 1..1008 2..1009 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:25:28 Download gff for RH27559.complete
Subject Subject Range Query Range Percent Splice Strand
CG4688-RA 2..1009 2..1009 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:32:30 Download gff for RH27559.complete
Subject Subject Range Query Range Percent Splice Strand
GstE14-RA 1..1008 2..1009 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:29:37 Download gff for RH27559.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13239728..13239937 1..210 99 -> Plus
2R 13240065..13240265 211..411 100 -> Plus
2R 13240324..13240446 412..534 100 -> Plus
2R 13240539..13241013 535..1009 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:29:37 Download gff for RH27559.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13239728..13239937 1..210 99 -> Plus
2R 13240065..13240265 211..411 100 -> Plus
2R 13240324..13240446 412..534 100 -> Plus
2R 13240539..13241013 535..1009 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:29:37 Download gff for RH27559.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13239728..13239937 1..210 99 -> Plus
2R 13240065..13240265 211..411 100 -> Plus
2R 13240324..13240446 412..534 100 -> Plus
2R 13240539..13241013 535..1009 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:44:57 Download gff for RH27559.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9127233..9127442 1..210 99 -> Plus
arm_2R 9127570..9127770 211..411 100 -> Plus
arm_2R 9127829..9127951 412..534 100 -> Plus
arm_2R 9128044..9128518 535..1009 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:00:56 Download gff for RH27559.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13240927..13241136 1..210 99 -> Plus
2R 13241264..13241464 211..411 100 -> Plus
2R 13241523..13241645 412..534 100 -> Plus
2R 13241738..13242212 535..1009 100   Plus

RH27559.hyp Sequence

Translation from 0 to 758

> RH27559.hyp
QLLIDFQGVRLSVFLPDPNLMSQPKPILYYDERSPPVRSCLMLIKLLDID
VELRFVNLFKGEQFQKDFLALNPQHSVPTLVHGDLVLTDSHAILIHLAEK
FDEGGSLWPQEHAERMKVLNLLLFECSFLFRRDSDFMSATVRQGFANVDV
AHHERKLTEAYIIMERYLENSDFMAGPQLTLADLSIVTTLSTVNLMFPLS
QFPRLRRWFTAMQQLDAYEANCSGLEKLRQTMESVGSFQFPSSSAVVTEK
VE*

RH27559.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:49:46
Subject Length Description Subject Range Query Range Score Percent Strand
GstE14-PA 232 CG4688-PA 1..232 21..252 1192 100 Plus
GstE4-PA 222 CG17525-PA 6..215 28..234 331 34.8 Plus
GstE12-PC 223 CG16936-PC 3..215 25..234 314 34.3 Plus
GstE12-PB 223 CG16936-PB 3..215 25..234 314 34.3 Plus
GstE12-PD 223 CG16936-PD 3..215 25..234 314 34.3 Plus

RH27559.pep Sequence

Translation from 60 to 758

> RH27559.pep
MSQPKPILYYDERSPPVRSCLMLIKLLDIDVELRFVNLFKGEQFQKDFLA
LNPQHSVPTLVHGDLVLTDSHAILIHLAEKFDEGGSLWPQEHAERMKVLN
LLLFECSFLFRRDSDFMSATVRQGFANVDVAHHERKLTEAYIIMERYLEN
SDFMAGPQLTLADLSIVTTLSTVNLMFPLSQFPRLRRWFTAMQQLDAYEA
NCSGLEKLRQTMESVGSFQFPSSSAVVTEKVE*

RH27559.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:14:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13683-PA 231 GF13683-PA 3..231 2..229 1002 81.2 Plus
Dana\GF13293-PA 223 GF13293-PA 3..215 5..214 330 35.2 Plus
Dana\GF11968-PA 972 GF11968-PA 4..225 5..222 326 35.4 Plus
Dana\GF17947-PA 214 GF17947-PA 3..208 8..213 324 34.8 Plus
Dana\GF11958-PA 226 GF11958-PA 3..216 5..214 303 34.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:14:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20370-PA 232 GG20370-PA 1..232 1..232 1204 97.4 Plus
Dere\GG21886-PA 222 GG21886-PA 6..215 8..214 339 36 Plus
Dere\GG21901-PA 225 GG21901-PA 4..203 5..201 326 36.3 Plus
Dere\GG19896-PA 223 GG19896-PA 3..215 5..214 318 33.3 Plus
Dere\GG18795-PA 224 GG18795-PA 2..214 4..215 315 31.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:14:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21620-PA 238 GH21620-PA 3..221 5..221 850 72.6 Plus
Dgri\GH21542-PA 224 GH21542-PA 3..210 5..209 334 35.4 Plus
Dgri\GH20548-PA 213 GH20548-PA 3..208 8..213 333 33.7 Plus
Dgri\GH17520-PA 213 GH17520-PA 3..208 8..213 333 33.7 Plus
Dgri\GH17521-PA 216 GH17521-PA 3..209 8..214 332 32.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:06:32
Subject Length Description Subject Range Query Range Score Percent Strand
GstE14-PA 232 CG4688-PA 1..232 1..232 1192 100 Plus
GstE4-PA 222 CG17525-PA 6..215 8..214 331 34.8 Plus
GstE12-PC 223 CG16936-PC 3..215 5..214 314 34.3 Plus
GstE12-PB 223 CG16936-PB 3..215 5..214 314 34.3 Plus
GstE12-PD 223 CG16936-PD 3..215 5..214 314 34.3 Plus
GstE12-PA 223 CG16936-PA 3..215 5..214 314 34.3 Plus
GstE11-PB 225 CG5224-PB 4..203 5..201 313 36.3 Plus
GstE11-PA 225 CG5224-PA 4..203 5..201 313 36.3 Plus
GstE13-PB 226 CG11784-PB 3..211 5..209 307 33.8 Plus
GstE13-PA 226 CG11784-PA 3..211 5..209 307 33.8 Plus
GstE7-PA 223 CG17531-PA 2..205 4..204 305 34.8 Plus
GstE10-PB 240 CG17522-PB 5..222 7..220 305 33.5 Plus
GstE10-PA 240 CG17522-PA 5..222 7..220 305 33.5 Plus
GstD11-PA 222 CG17639-PA 4..185 6..188 299 39.1 Plus
GstD11-PB 243 CG17639-PB 25..206 6..188 299 39.1 Plus
GstD4-PA 215 CG11512-PA 4..209 9..214 290 29.3 Plus
GstD8-PA 212 CG4421-PA 4..208 9..213 289 30 Plus
GstE2-PA 221 CG17523-PA 4..216 5..215 285 31 Plus
GstD7-PA 224 CG4371-PA 2..214 4..215 277 30.6 Plus
GstD9-PB 218 CG10091-PB 5..204 9..206 273 30.5 Plus
GstD9-PA 218 CG10091-PA 5..204 9..206 273 30.5 Plus
GstD1-PB 209 CG10045-PB 5..209 9..213 272 30.8 Plus
GstD1-PA 209 CG10045-PA 5..209 9..213 272 30.8 Plus
GstD6-PA 215 CG4423-PA 3..189 8..195 267 30.2 Plus
GstE6-PA 222 CG17530-PA 3..209 5..208 266 32.2 Plus
GstD3-PA 199 CG4381-PA 1..192 22..213 265 27.3 Plus
GstD5-PA 216 CG12242-PA 4..209 9..214 263 26.9 Plus
GstD2-PA 215 CG4181-PA 4..209 9..214 260 27.4 Plus
GstE9-PA 221 CG17534-PA 3..209 5..208 259 30.1 Plus
GstE5-PA 222 CG17527-PA 3..215 5..214 257 29.1 Plus
GstE1-PA 224 CG5164-PA 1..200 1..199 256 31.6 Plus
GstE3-PA 220 CG17524-PA 3..217 5..220 250 30.1 Plus
GstE8-PB 222 CG17533-PB 3..202 5..202 247 31 Plus
GstE8-PA 222 CG17533-PA 3..202 5..202 247 31 Plus
GstD10-PB 210 CG18548-PB 3..210 8..214 240 27.5 Plus
GstD10-PA 210 CG18548-PA 3..210 8..214 240 27.5 Plus
gfzf-PD 234 CG33546-PD 3..212 8..201 180 25 Plus
gfzf-PE 1045 CG33546-PE 814..1023 8..201 180 25 Plus
gfzf-PB 1045 CG33546-PB 814..1023 8..201 180 25 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:14:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20072-PA 225 GI20072-PA 4..222 6..222 850 71.2 Plus
Dmoj\GI19515-PA 223 GI19515-PA 3..210 5..209 333 35.4 Plus
Dmoj\GI20133-PA 225 GI20133-PA 8..221 5..215 332 34.9 Plus
Dmoj\GI23194-PA 213 GI23194-PA 3..210 8..215 325 32.4 Plus
Dmoj\GI20121-PA 222 GI20121-PA 3..215 5..214 317 34.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:14:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11001-PA 230 GL11001-PA 1..223 1..223 959 78.5 Plus
Dper\GL17783-PA 226 GL17783-PA 4..210 5..208 330 36.7 Plus
Dper\GL27303-PA 213 GL27303-PA 3..210 8..214 322 33.5 Plus
Dper\GL17702-PA 223 GL17702-PA 3..215 5..214 316 33.6 Plus
Dper\GL17623-PA 223 GL17623-PA 3..216 5..215 310 35.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:14:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18357-PA 230 GA18357-PA 1..229 1..229 952 76 Plus
Dpse\GA18748-PA 226 GA18748-PA 4..210 5..208 328 36.2 Plus
Dpse\GA14226-PA 223 GA14226-PA 3..215 5..214 326 33.6 Plus
Dpse\GA18171-PA 213 GA18171-PA 3..210 8..214 322 32.7 Plus
Dpse\GA11198-PA 224 GA11198-PA 3..217 5..215 314 35.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:15:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21457-PA 232 GM21457-PA 1..232 1..232 1211 97.4 Plus
Dsec\GM21879-PA 222 GM21879-PA 6..215 8..214 333 34.8 Plus
Dsec\GM21891-PA 225 GM21891-PA 4..203 5..201 325 36.8 Plus
Dsec\GM11796-PA 223 GM11796-PA 3..215 5..214 318 33.3 Plus
Dsec\GM19908-PA 240 GM19908-PA 5..222 7..220 306 34.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:15:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10955-PA 232 GD10955-PA 1..232 1..232 1208 97.4 Plus
Dsim\GD11373-PA 222 GD11373-PA 6..215 8..214 325 35 Plus
Dsim\GD10633-PA 226 GD10633-PA 3..211 5..209 318 34.3 Plus
Dsim\GD11376-PA 223 GD11376-PA 2..205 4..204 305 34.3 Plus
Dsim\GD18816-PA 215 GD18816-PA 3..208 8..213 300 28.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:15:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21166-PA 226 GJ21166-PA 4..223 6..222 858 72.7 Plus
Dvir\GJ21084-PA 223 GJ21084-PA 3..215 5..214 342 34.1 Plus
Dvir\GJ22854-PA 213 GJ22854-PA 3..211 8..216 331 32.2 Plus
Dvir\GJ19903-PA 228 GJ19903-PA 9..215 5..208 322 35.7 Plus
Dvir\GJ22450-PA 238 GJ22450-PA 4..220 7..220 318 35.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:15:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17977-PA 229 GK17977-PA 6..225 5..221 788 67.7 Plus
Dwil\GK23004-PA 226 GK23004-PA 4..203 5..201 337 37.3 Plus
Dwil\GK21654-PA 223 GK21654-PA 3..210 5..209 322 34.4 Plus
Dwil\GK11874-PA 219 GK11874-PA 3..209 8..214 313 30.6 Plus
Dwil\GK11202-PA 218 GK11202-PA 6..213 8..215 310 32.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:15:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12529-PA 232 GE12529-PA 1..232 1..232 1209 97.8 Plus
Dyak\GE11961-PA 222 GE11961-PA 6..215 8..214 337 35.2 Plus
Dyak\GE11975-PA 225 GE11975-PA 4..203 5..201 335 36.8 Plus
Dyak\GE11420-PA 223 GE11420-PA 3..215 5..214 327 33.8 Plus
Dyak\GE11964-PA 222 GE11964-PA 2..204 4..204 315 35.9 Plus