BDGP Sequence Production Resources |
Search the DGRC for RH28596
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 285 |
Well: | 96 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG14787-RA |
Protein status: | RH28596.pep: gold |
Preliminary Size: | 843 |
Sequenced Size: | 877 |
Gene | Date | Evidence |
---|---|---|
CG14787 | 2002-01-01 | Sim4 clustering to Release 2 |
CG14787 | 2002-05-20 | Blastp of sequenced clone |
CG14787 | 2003-01-01 | Sim4 clustering to Release 3 |
CG14787 | 2008-04-29 | Release 5.5 accounting |
CG14787 | 2008-08-15 | Release 5.9 accounting |
CG14787 | 2008-12-18 | 5.12 accounting |
877 bp (877 high quality bases) assembled on 2002-05-20
GenBank Submission: AY118430
> RH28596.complete GCTCTATCACGCAGTCTTCAGCGATGGCCACAAACGAGAGCTGCAAGCAC TTCAGGGAGCTGGTCGTCGAACAGCGTTCTGGGCTGCTCCACATACGCTT CCAGCGGCGCTGGCAACGCCGAACCCTCTACGAGCTGATGCGCGCCCTGG ACCTGGCGAGTGCAGACGCCGCCGTTAAGGTGGTCGTGCTCTCGGGCGAG TTTTCTGCAGCATGTGGCGGTGAGATGGAACCGTTGGCTCTCAAACAGGG TCTGGAGAATAGGAGTAGGCGTACCGCTTCCCACGAAGAAGCTGTGGGCA GTGGTGATGCCGAGGAGCAGTACATCCATGAGAAGGCGGCCAATTTTGTG ATGCGCTCGCTGGCCAAGAAGCTGCTTGTGCACCGCAAACTCCTAGTGGC TTTTGTGGAGAGGCAGTGCGTCGGTCTGGGCCTGAGCGTGTGCAGCCTGT GCGATCTGGTCTTCGCAACGGAGTTATCTGCCTTTGTGCCCGCTTTCTCG CACCTGGATCCCTGCACCAAGGTGGGTCCCGGCTGGACTGTGCCACACGT CCACTGGCTGCTTCGTCTGGGCGATCAAGCGAGCTCCAGCATTGCCCTCC AGTGTGGCCTTGTGGCCAGTGTGGTGCGAGAGCCGCAGGAGTTTTGGCAC CGCGTCGACCAATACTTGCGCTTGCCTTCCGCCTCCCTGTTGGCGACAAA GCGCCTCCTGTTTCGTCCCTGGCAGGACTCCCTCTTGGCCGAATTGCGCG AGGAGGGCACTCCGCTGGCTGCGCAGCGACGCCGCTTGGCCAGATCCTCG CTGTAGGGTTGCGCTTCCAGATCCGTTGAATCGATTAAGTAAATAAATAG CGATTATAAAATAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG14787-RA | 861 | CG14787-RA | 1..861 | 2..862 | 4305 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 1354746..1355606 | 862..2 | 4275 | 99.8 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 1460805..1461667 | 864..2 | 4315 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 1468903..1469765 | 864..2 | 4315 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 1354746..1355606 | 1..862 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14787-RA | 1..783 | 24..806 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14787-RA | 1..783 | 24..806 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14787-RA | 1..783 | 24..806 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14787-RA | 1..783 | 24..806 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14787-RA | 1..783 | 24..806 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14787-RA | 1..861 | 2..862 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14787-RA | 1..861 | 2..862 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14787-RA | 8..870 | 1..862 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14787-RA | 1..861 | 2..862 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14787-RA | 8..870 | 1..862 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 1460807..1461667 | 1..862 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 1460807..1461667 | 1..862 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 1460807..1461667 | 1..862 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 1354840..1355700 | 1..862 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 1468905..1469765 | 1..862 | 99 | Minus |
Translation from 2 to 805
> RH28596.hyp SITQSSAMATNESCKHFRELVVEQRSGLLHIRFQRRWQRRTLYELMRALD LASADAAVKVVVLSGEFSAACGGEMEPLALKQGLENRSRRTASHEEAVGS GDAEEQYIHEKAANFVMRSLAKKLLVHRKLLVAFVERQCVGLGLSVCSLC DLVFATELSAFVPAFSHLDPCTKVGPGWTVPHVHWLLRLGDQASSSIALQ CGLVASVVREPQEFWHRVDQYLRLPSASLLATKRLLFRPWQDSLLAELRE EGTPLAAQRRRLARSSL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG14787-PA | 260 | CG14787-PA | 1..260 | 8..267 | 1330 | 100 | Plus |
Translation from 23 to 805
> RH28596.pep MATNESCKHFRELVVEQRSGLLHIRFQRRWQRRTLYELMRALDLASADAA VKVVVLSGEFSAACGGEMEPLALKQGLENRSRRTASHEEAVGSGDAEEQY IHEKAANFVMRSLAKKLLVHRKLLVAFVERQCVGLGLSVCSLCDLVFATE LSAFVPAFSHLDPCTKVGPGWTVPHVHWLLRLGDQASSSIALQCGLVASV VREPQEFWHRVDQYLRLPSASLLATKRLLFRPWQDSLLAELREEGTPLAA QRRRLARSSL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21279-PA | 260 | GF21279-PA | 1..260 | 1..260 | 813 | 61.8 | Plus |
Dana\GF24414-PA | 260 | GF24414-PA | 2..227 | 6..238 | 166 | 23.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12699-PA | 260 | GG12699-PA | 1..260 | 1..260 | 1182 | 90.4 | Plus |
Dere\GG14742-PA | 262 | GG14742-PA | 2..227 | 6..238 | 162 | 22.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11876-PA | 272 | GH11876-PA | 5..252 | 2..253 | 430 | 37.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG14787-PA | 260 | CG14787-PA | 1..260 | 1..260 | 1330 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15664-PA | 275 | GI15664-PA | 17..257 | 8..252 | 460 | 41.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14379-PA | 268 | GL14379-PA | 24..268 | 4..260 | 711 | 55.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13245-PA | 252 | GA13245-PA | 8..252 | 4..260 | 715 | 55.6 | Plus |
Dpse\GA12604-PA | 260 | GA12604-PA | 6..218 | 10..229 | 152 | 23.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18975-PA | 243 | GM18975-PA | 1..243 | 1..260 | 1128 | 89.2 | Plus |
Dsec\GM14360-PA | 262 | GM14360-PA | 6..240 | 10..251 | 171 | 23.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16421-PA | 260 | GD16421-PA | 1..260 | 1..260 | 1223 | 94.6 | Plus |
Dsim\GD13579-PA | 262 | GD13579-PA | 4..227 | 8..238 | 164 | 22.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19197-PA | 274 | GJ19197-PA | 13..257 | 5..253 | 487 | 41.2 | Plus |