BDGP Sequence Production Resources |
Search the DGRC for RH28890
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 288 |
Well: | 90 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG10253-RA |
Protein status: | RH28890.pep: gold |
Preliminary Size: | 1896 |
Sequenced Size: | 2391 |
Gene | Date | Evidence |
---|---|---|
CG10253 | 2002-01-01 | Sim4 clustering to Release 2 |
CG10253 | 2002-03-28 | Blastp of sequenced clone |
CG10253 | 2003-01-01 | Sim4 clustering to Release 3 |
CG10253 | 2008-04-29 | Release 5.5 accounting |
CG10253 | 2008-08-15 | Release 5.9 accounting |
CG10253 | 2008-12-18 | 5.12 accounting |
2391 bp (2391 high quality bases) assembled on 2002-03-28
GenBank Submission: AY094917
> RH28890.complete AACTGAGTTGAGGAAACGAAAGCCAAGTGCGCGCAACATAGGCCGCATAA ATTTCTAGTGCAATTTCTATTTAGGTAAATTTAGTTTTTAGCGCAAAGTG AATTCCTGGCACTTTAGGAATCCACTCATAAGTTGATACATCTTATTCGA AAAAAAAGTGTCAGATATCTATAAAGAAAAAAGCAGGCCAAGTTTTTTTT CGGACGCCGCAAAAAAAGGAATCACATCAATTATCGATTTTGTGCACATG AAAAGCGTTTCTGCAATTACCTAGAAATAATTGCTCAAATTCCCTCAAAA GTCAAGTGCACAAATCGGCGAAATAATGGCAGCCAAGCGGAATGCGGTGA CCACGGAAGCTCCGGAATCGTCGGCGCCCGGCGAAGGTACCGCCCTCGCC CTCGACTCCCGCCTGTCCAAGCGCGTGGAGAGCGTCATCCCCAAGAAGCG ACATGAGGCGCTTAAGTGGTTCGGATGGGGATATAACGACTCGCAGTTTT ATGGTAAGGATGGTATCATCTGTTTTCGCGGTGAAAAATATCCCCTCGGT GGATGCGAGCTGCCCAGTTTCACCAAGTGGGTGGAGAAGAAGTTCGATCT GCGAGTGGATACCACCAAGCAGTATCCCCAGTTGCCACGAACGTATCCGC GGCCAGTGGAGAACGCACCCTTCCTGCACGAACTGAAGGGCACCACCCAG GTGGATTACTCTGCGGAGGGAATCGATCGGTTGGTGCGGTGCCATGGCCA GACCCTCAACGATATATACAGCCTGTGGCACCACAAGTTTCGACGGATAC CCGATTTGGTGGTGTGGCCACGTTGCCACGATGAGGTAGTCCAGTTGGTG CGGCTGGCCAACAAGCACAATGTGATGCTGGTGCCTTTTGGTGGTGGAAC GAGTGTATCGGGAGCCATCACCTGTCCGCAGAACGAGAGCCGAATGATCT GCGCCCTGGACACCTCTCAGATGAATCGACTATTGTGGCTAAACCGGGAG AATCTCACCGTATGCTTTGAGTCCGGCATTGTGGGTCAGGATCTGGAGAG GGTGTTGCGAAGTGAAGGTCTGACAGTTGGCCACGAACCGGATTCGTATG AGTTCAGCACCCTGGGCGGCTGGGTGGCAACTCGTGCATCTGGCATGAAG AAGAACGTCTATGGTAACATAGAGGATCTGGTGGTGCGAGTTAGGATGGT CACTCCGTCGGGAACGCTGGAACGTGAATGCAGTGCGCCGCGCGTGAGTT GTGGACCTGATTTCAACCATGTCATCTTGGGATCCGAGGGCACTCTGGGA GTAATCACCGAAGTGGTGCTCAAGGTGCGTCCCCTGCCATCGTTGAGGCG TTACGGATCCCTGGCCTTTCCCAACTTCGAGCAGGGAGTGCTCTTCATGC GCGAAGTGGCGCGGAGGAGATGTCAACCCGCCTCCGTCCGGCTGATGGAC AACGAGCAGTTCATGTTCGGCCAGGCCCTGAAACCGGAGAAGTCCTGGTG GGCCAGTGTGGTGGATGCCATGAAGCAGCGCTACGTTACCTCCTGGAAGG GCATCGATCTCAATCAGATCTGCGCGGCCACCTTGCTTTTCGAGGGCGAT TTAAAGGATGTCCAGCGGCAGGAGGCACTCATTTACGAGATTGCCGAAAA GTTTCAGGGATTTCCGGCAGGTGGACAAAATGGGGAACGGGGCTATATAC TCACCTTTGTGATTGCCTACATTAGGGACTTTGGACTACATCAGGGAATT GTGGCGGAGTCCTTTGAGACATCGGTGCCTTGGGATCGCTGCAGTCTGCT CTGTCGTTCTGTGAAGCAGCGTGTTGTTTCGGAGTGCAGCAAACGTAGTA TTAACTACTATACCATTTCGTGTAGAGTAACCCAAACCTACGATGCCGGT GCCTGCATCTACTTCTACTTTGGATTCCGCAGTACGGACGTGGCCGATCC CGTCGAGCTTTTCGAGGCCATCGAGCACAGTGCCCGCGATGAGATACTGT CCTGCGGCGGATCACTGTCCCATCACCATGGCGTGGGAAAGATACGAAGC CATTGGTACCGCAATGCCGTCACGGAAACGGGCAGTTCACTATATTCGGC GGCCAAGCGGCATCTCGATCCGAAGAATATCTTTGCTCTCGGTAACCTTC TGCCCCTGGAGGAGGCTCAGGCTTCTCCGCCACCACCCACATCATCGACA CCACCAAAGGCCAAATTGTAGAGGGTAGCCAACTAGATAGTGCGCTTAGT TCGTTTACTAGTCTTAGTCACTTTACTGATTTTCCTAGTCGCTCTTGGGG GTTCGGGTCTCCAGTTCTTTTGTAGCGGGCTCATGTTTTCTATGGGTTTT GATAAATAAATGGAGTATTTCTCTTGAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 10818455..10819644 | 1727..538 | 5845 | 99.4 | Minus |
chr2R | 21145070 | chr2R | 10817386..10817931 | 2376..1831 | 2700 | 99.6 | Minus |
chr2R | 21145070 | chr2R | 10820159..10820603 | 450..6 | 2210 | 99.8 | Minus |
chr2R | 21145070 | chr2R | 10817985..10818099 | 1836..1722 | 545 | 98.3 | Minus |
chr2R | 21145070 | chr2R | 10819706..10819793 | 537..450 | 440 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 14931151..14932340 | 1727..538 | 5950 | 100 | Minus |
2R | 25286936 | 2R | 14930081..14930628 | 2378..1831 | 2740 | 100 | Minus |
2R | 25286936 | 2R | 14932855..14933299 | 450..6 | 2225 | 100 | Minus |
2R | 25286936 | 2R | 14930682..14930796 | 1836..1722 | 545 | 98.3 | Minus |
2R | 25286936 | 2R | 14932402..14932489 | 537..450 | 440 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 14932350..14933539 | 1727..538 | 5950 | 100 | Minus |
2R | 25260384 | 2R | 14931280..14931827 | 2378..1831 | 2740 | 100 | Minus |
2R | 25260384 | 2R | 14934054..14934498 | 450..6 | 2225 | 100 | Minus |
2R | 25260384 | 2R | 14931881..14931995 | 1836..1722 | 545 | 98.2 | Minus |
2R | 25260384 | 2R | 14933601..14933688 | 537..450 | 440 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 10817990..10818094 | 1727..1831 | 100 | <- | Minus |
chr2R | 10817386..10817930 | 1832..2376 | 99 | <- | Minus |
chr2R | 10818456..10819644 | 538..1726 | 99 | <- | Minus |
chr2R | 10819706..10819792 | 451..537 | 100 | <- | Minus |
chr2R | 10820159..10820604 | 1..450 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10253-RA | 1..1896 | 326..2221 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10253-RB | 1..1896 | 326..2221 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10253-RD | 1..1896 | 326..2221 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10253-RA | 1..1896 | 326..2221 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10253-RD | 1..1896 | 326..2221 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10253-RA | 2..2372 | 6..2376 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10253-RC | 81..2458 | 1..2376 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10253-RA | 1..2376 | 3..2376 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10253-RA | 2..2372 | 6..2376 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10253-RA | 1..2376 | 3..2376 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14930083..14930627 | 1832..2376 | 100 | <- | Minus |
2R | 14930687..14930791 | 1727..1831 | 100 | <- | Minus |
2R | 14931152..14932340 | 538..1726 | 100 | <- | Minus |
2R | 14932402..14932488 | 451..537 | 100 | <- | Minus |
2R | 14932855..14933300 | 1..450 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14930083..14930627 | 1832..2376 | 100 | <- | Minus |
2R | 14930687..14930791 | 1727..1831 | 100 | <- | Minus |
2R | 14931152..14932340 | 538..1726 | 100 | <- | Minus |
2R | 14932402..14932488 | 451..537 | 100 | <- | Minus |
2R | 14932855..14933300 | 1..450 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14930083..14930627 | 1832..2376 | 100 | <- | Minus |
2R | 14930687..14930791 | 1727..1831 | 100 | <- | Minus |
2R | 14931152..14932340 | 538..1726 | 100 | <- | Minus |
2R | 14932402..14932488 | 451..537 | 100 | <- | Minus |
2R | 14932855..14933300 | 1..450 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 10817588..10818132 | 1832..2376 | 100 | <- | Minus |
arm_2R | 10818192..10818296 | 1727..1831 | 100 | <- | Minus |
arm_2R | 10818657..10819845 | 538..1726 | 100 | <- | Minus |
arm_2R | 10819907..10819993 | 451..537 | 100 | <- | Minus |
arm_2R | 10820360..10820805 | 1..450 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14931282..14931826 | 1832..2376 | 100 | <- | Minus |
2R | 14931886..14931990 | 1727..1831 | 100 | <- | Minus |
2R | 14932351..14933539 | 538..1726 | 100 | <- | Minus |
2R | 14933601..14933687 | 451..537 | 100 | <- | Minus |
2R | 14934054..14934499 | 1..450 | 99 | Minus |
Translation from 325 to 2220
> RH28890.pep MAAKRNAVTTEAPESSAPGEGTALALDSRLSKRVESVIPKKRHEALKWFG WGYNDSQFYGKDGIICFRGEKYPLGGCELPSFTKWVEKKFDLRVDTTKQY PQLPRTYPRPVENAPFLHELKGTTQVDYSAEGIDRLVRCHGQTLNDIYSL WHHKFRRIPDLVVWPRCHDEVVQLVRLANKHNVMLVPFGGGTSVSGAITC PQNESRMICALDTSQMNRLLWLNRENLTVCFESGIVGQDLERVLRSEGLT VGHEPDSYEFSTLGGWVATRASGMKKNVYGNIEDLVVRVRMVTPSGTLER ECSAPRVSCGPDFNHVILGSEGTLGVITEVVLKVRPLPSLRRYGSLAFPN FEQGVLFMREVARRRCQPASVRLMDNEQFMFGQALKPEKSWWASVVDAMK QRYVTSWKGIDLNQICAATLLFEGDLKDVQRQEALIYEIAEKFQGFPAGG QNGERGYILTFVIAYIRDFGLHQGIVAESFETSVPWDRCSLLCRSVKQRV VSECSKRSINYYTISCRVTQTYDAGACIYFYFGFRSTDVADPVELFEAIE HSARDEILSCGGSLSHHHGVGKIRSHWYRNAVTETGSSLYSAAKRHLDPK NIFALGNLLPLEEAQASPPPPTSSTPPKAKL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12633-PA | 637 | GF12633-PA | 1..637 | 1..631 | 3038 | 87.4 | Plus |
Dana\GF21462-PA | 473 | GF21462-PA | 49..224 | 154..332 | 170 | 27.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22382-PA | 636 | GG22382-PA | 1..636 | 1..631 | 3290 | 96.1 | Plus |
Dere\GG12909-PA | 531 | GG12909-PA | 107..282 | 154..332 | 171 | 27.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20803-PA | 627 | GH20803-PA | 1..608 | 1..610 | 2760 | 80.8 | Plus |
Dgri\GH24571-PA | 486 | GH24571-PA | 53..237 | 146..332 | 186 | 29.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ADPS-PC | 631 | CG10253-PC | 1..631 | 1..631 | 3355 | 100 | Plus |
ADPS-PB | 631 | CG10253-PB | 1..631 | 1..631 | 3355 | 100 | Plus |
ADPS-PD | 631 | CG10253-PD | 1..631 | 1..631 | 3355 | 100 | Plus |
ADPS-PA | 631 | CG10253-PA | 1..631 | 1..631 | 3355 | 100 | Plus |
D2hgdh-PA | 533 | CG3835-PA | 116..282 | 161..330 | 173 | 28.7 | Plus |
D2hgdh-PC | 533 | CG3835-PC | 116..282 | 161..330 | 173 | 28.7 | Plus |
D2hgdh-PB | 533 | CG3835-PB | 116..282 | 161..330 | 173 | 28.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20890-PA | 635 | GI20890-PA | 1..611 | 1..613 | 2844 | 83.8 | Plus |
Dmoj\GI11068-PA | 530 | GI11068-PA | 106..281 | 154..332 | 175 | 28.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11706-PA | 596 | GL11706-PA | 5..575 | 43..613 | 2814 | 89.3 | Plus |
Dper\GL14161-PA | 513 | GL14161-PA | 89..264 | 154..332 | 177 | 29.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA24243-PA | 641 | GA24243-PA | 1..614 | 1..613 | 2978 | 88.6 | Plus |
Dpse\GA17719-PA | 513 | GA17719-PA | 89..264 | 154..332 | 177 | 29.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20165-PA | 635 | GM20165-PA | 1..635 | 1..631 | 3363 | 98.6 | Plus |
Dsec\GM19199-PA | 533 | GM19199-PA | 109..284 | 154..332 | 172 | 27.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25643-PA | 635 | GD25643-PA | 1..635 | 1..631 | 3349 | 98.1 | Plus |
Dsim\GD16587-PA | 533 | GD16587-PA | 109..284 | 154..332 | 174 | 27.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20622-PA | 642 | GJ20622-PA | 1..611 | 1..613 | 2860 | 84.7 | Plus |
Dvir\GJ16929-PA | 520 | GJ16929-PA | 96..271 | 154..332 | 168 | 27.9 | Plus |
Translation from 325 to 2220
> RH28890.hyp MAAKRNAVTTEAPESSAPGEGTALALDSRLSKRVESVIPKKRHEALKWFG WGYNDSQFYGKDGIICFRGEKYPLGGCELPSFTKWVEKKFDLRVDTTKQY PQLPRTYPRPVENAPFLHELKGTTQVDYSAEGIDRLVRCHGQTLNDIYSL WHHKFRRIPDLVVWPRCHDEVVQLVRLANKHNVMLVPFGGGTSVSGAITC PQNESRMICALDTSQMNRLLWLNRENLTVCFESGIVGQDLERVLRSEGLT VGHEPDSYEFSTLGGWVATRASGMKKNVYGNIEDLVVRVRMVTPSGTLER ECSAPRVSCGPDFNHVILGSEGTLGVITEVVLKVRPLPSLRRYGSLAFPN FEQGVLFMREVARRRCQPASVRLMDNEQFMFGQALKPEKSWWASVVDAMK QRYVTSWKGIDLNQICAATLLFEGDLKDVQRQEALIYEIAEKFQGFPAGG QNGERGYILTFVIAYIRDFGLHQGIVAESFETSVPWDRCSLLCRSVKQRV VSECSKRSINYYTISCRVTQTYDAGACIYFYFGFRSTDVADPVELFEAIE HSARDEILSCGGSLSHHHGVGKIRSHWYRNAVTETGSSLYSAAKRHLDPK NIFALGNLLPLEEAQASPPPPTSSTPPKAKL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG10253-PC | 631 | CG10253-PC | 1..631 | 1..631 | 3355 | 100 | Plus |
CG10253-PB | 631 | CG10253-PB | 1..631 | 1..631 | 3355 | 100 | Plus |
CG10253-PD | 631 | CG10253-PD | 1..631 | 1..631 | 3355 | 100 | Plus |
CG10253-PA | 631 | CG10253-PA | 1..631 | 1..631 | 3355 | 100 | Plus |
CG3835-PA | 533 | CG3835-PA | 116..282 | 161..330 | 173 | 28.7 | Plus |