Clone RH28890 Report

Search the DGRC for RH28890

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:288
Well:90
Vector:pFlc-1
Associated Gene/TranscriptCG10253-RA
Protein status:RH28890.pep: gold
Preliminary Size:1896
Sequenced Size:2391

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10253 2002-01-01 Sim4 clustering to Release 2
CG10253 2002-03-28 Blastp of sequenced clone
CG10253 2003-01-01 Sim4 clustering to Release 3
CG10253 2008-04-29 Release 5.5 accounting
CG10253 2008-08-15 Release 5.9 accounting
CG10253 2008-12-18 5.12 accounting

Clone Sequence Records

RH28890.complete Sequence

2391 bp (2391 high quality bases) assembled on 2002-03-28

GenBank Submission: AY094917

> RH28890.complete
AACTGAGTTGAGGAAACGAAAGCCAAGTGCGCGCAACATAGGCCGCATAA
ATTTCTAGTGCAATTTCTATTTAGGTAAATTTAGTTTTTAGCGCAAAGTG
AATTCCTGGCACTTTAGGAATCCACTCATAAGTTGATACATCTTATTCGA
AAAAAAAGTGTCAGATATCTATAAAGAAAAAAGCAGGCCAAGTTTTTTTT
CGGACGCCGCAAAAAAAGGAATCACATCAATTATCGATTTTGTGCACATG
AAAAGCGTTTCTGCAATTACCTAGAAATAATTGCTCAAATTCCCTCAAAA
GTCAAGTGCACAAATCGGCGAAATAATGGCAGCCAAGCGGAATGCGGTGA
CCACGGAAGCTCCGGAATCGTCGGCGCCCGGCGAAGGTACCGCCCTCGCC
CTCGACTCCCGCCTGTCCAAGCGCGTGGAGAGCGTCATCCCCAAGAAGCG
ACATGAGGCGCTTAAGTGGTTCGGATGGGGATATAACGACTCGCAGTTTT
ATGGTAAGGATGGTATCATCTGTTTTCGCGGTGAAAAATATCCCCTCGGT
GGATGCGAGCTGCCCAGTTTCACCAAGTGGGTGGAGAAGAAGTTCGATCT
GCGAGTGGATACCACCAAGCAGTATCCCCAGTTGCCACGAACGTATCCGC
GGCCAGTGGAGAACGCACCCTTCCTGCACGAACTGAAGGGCACCACCCAG
GTGGATTACTCTGCGGAGGGAATCGATCGGTTGGTGCGGTGCCATGGCCA
GACCCTCAACGATATATACAGCCTGTGGCACCACAAGTTTCGACGGATAC
CCGATTTGGTGGTGTGGCCACGTTGCCACGATGAGGTAGTCCAGTTGGTG
CGGCTGGCCAACAAGCACAATGTGATGCTGGTGCCTTTTGGTGGTGGAAC
GAGTGTATCGGGAGCCATCACCTGTCCGCAGAACGAGAGCCGAATGATCT
GCGCCCTGGACACCTCTCAGATGAATCGACTATTGTGGCTAAACCGGGAG
AATCTCACCGTATGCTTTGAGTCCGGCATTGTGGGTCAGGATCTGGAGAG
GGTGTTGCGAAGTGAAGGTCTGACAGTTGGCCACGAACCGGATTCGTATG
AGTTCAGCACCCTGGGCGGCTGGGTGGCAACTCGTGCATCTGGCATGAAG
AAGAACGTCTATGGTAACATAGAGGATCTGGTGGTGCGAGTTAGGATGGT
CACTCCGTCGGGAACGCTGGAACGTGAATGCAGTGCGCCGCGCGTGAGTT
GTGGACCTGATTTCAACCATGTCATCTTGGGATCCGAGGGCACTCTGGGA
GTAATCACCGAAGTGGTGCTCAAGGTGCGTCCCCTGCCATCGTTGAGGCG
TTACGGATCCCTGGCCTTTCCCAACTTCGAGCAGGGAGTGCTCTTCATGC
GCGAAGTGGCGCGGAGGAGATGTCAACCCGCCTCCGTCCGGCTGATGGAC
AACGAGCAGTTCATGTTCGGCCAGGCCCTGAAACCGGAGAAGTCCTGGTG
GGCCAGTGTGGTGGATGCCATGAAGCAGCGCTACGTTACCTCCTGGAAGG
GCATCGATCTCAATCAGATCTGCGCGGCCACCTTGCTTTTCGAGGGCGAT
TTAAAGGATGTCCAGCGGCAGGAGGCACTCATTTACGAGATTGCCGAAAA
GTTTCAGGGATTTCCGGCAGGTGGACAAAATGGGGAACGGGGCTATATAC
TCACCTTTGTGATTGCCTACATTAGGGACTTTGGACTACATCAGGGAATT
GTGGCGGAGTCCTTTGAGACATCGGTGCCTTGGGATCGCTGCAGTCTGCT
CTGTCGTTCTGTGAAGCAGCGTGTTGTTTCGGAGTGCAGCAAACGTAGTA
TTAACTACTATACCATTTCGTGTAGAGTAACCCAAACCTACGATGCCGGT
GCCTGCATCTACTTCTACTTTGGATTCCGCAGTACGGACGTGGCCGATCC
CGTCGAGCTTTTCGAGGCCATCGAGCACAGTGCCCGCGATGAGATACTGT
CCTGCGGCGGATCACTGTCCCATCACCATGGCGTGGGAAAGATACGAAGC
CATTGGTACCGCAATGCCGTCACGGAAACGGGCAGTTCACTATATTCGGC
GGCCAAGCGGCATCTCGATCCGAAGAATATCTTTGCTCTCGGTAACCTTC
TGCCCCTGGAGGAGGCTCAGGCTTCTCCGCCACCACCCACATCATCGACA
CCACCAAAGGCCAAATTGTAGAGGGTAGCCAACTAGATAGTGCGCTTAGT
TCGTTTACTAGTCTTAGTCACTTTACTGATTTTCCTAGTCGCTCTTGGGG
GTTCGGGTCTCCAGTTCTTTTGTAGCGGGCTCATGTTTTCTATGGGTTTT
GATAAATAAATGGAGTATTTCTCTTGAAAAAAAAAAAAAAA

RH28890.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:18:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG10253.a 2683 CG10253.a 88..2460 6..2378 11865 100 Plus
CG10253-RA 2607 CG10253-RA 12..2384 6..2378 11865 100 Plus
CG10253.f 2838 CG10253.f 88..2460 6..2378 11865 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:05:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 10818455..10819644 1727..538 5845 99.4 Minus
chr2R 21145070 chr2R 10817386..10817931 2376..1831 2700 99.6 Minus
chr2R 21145070 chr2R 10820159..10820603 450..6 2210 99.8 Minus
chr2R 21145070 chr2R 10817985..10818099 1836..1722 545 98.3 Minus
chr2R 21145070 chr2R 10819706..10819793 537..450 440 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:26:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:05:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14931151..14932340 1727..538 5950 100 Minus
2R 25286936 2R 14930081..14930628 2378..1831 2740 100 Minus
2R 25286936 2R 14932855..14933299 450..6 2225 100 Minus
2R 25286936 2R 14930682..14930796 1836..1722 545 98.3 Minus
2R 25286936 2R 14932402..14932489 537..450 440 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:48:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 14932350..14933539 1727..538 5950 100 Minus
2R 25260384 2R 14931280..14931827 2378..1831 2740 100 Minus
2R 25260384 2R 14934054..14934498 450..6 2225 100 Minus
2R 25260384 2R 14931881..14931995 1836..1722 545 98.2 Minus
2R 25260384 2R 14933601..14933688 537..450 440 100 Minus
Blast to na_te.dros performed on 2019-03-16 13:05:12 has no hits.

RH28890.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:06:04 Download gff for RH28890.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 10817990..10818094 1727..1831 100 <- Minus
chr2R 10817386..10817930 1832..2376 99 <- Minus
chr2R 10818456..10819644 538..1726 99 <- Minus
chr2R 10819706..10819792 451..537 100 <- Minus
chr2R 10820159..10820604 1..450 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:44:23 Download gff for RH28890.complete
Subject Subject Range Query Range Percent Splice Strand
CG10253-RA 1..1896 326..2221 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:22:55 Download gff for RH28890.complete
Subject Subject Range Query Range Percent Splice Strand
CG10253-RB 1..1896 326..2221 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:15:26 Download gff for RH28890.complete
Subject Subject Range Query Range Percent Splice Strand
CG10253-RD 1..1896 326..2221 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:59:26 Download gff for RH28890.complete
Subject Subject Range Query Range Percent Splice Strand
CG10253-RA 1..1896 326..2221 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:13:33 Download gff for RH28890.complete
Subject Subject Range Query Range Percent Splice Strand
CG10253-RD 1..1896 326..2221 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:49:51 Download gff for RH28890.complete
Subject Subject Range Query Range Percent Splice Strand
CG10253-RA 2..2372 6..2376 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:22:55 Download gff for RH28890.complete
Subject Subject Range Query Range Percent Splice Strand
CG10253-RC 81..2458 1..2376 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:15:26 Download gff for RH28890.complete
Subject Subject Range Query Range Percent Splice Strand
CG10253-RA 1..2376 3..2376 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:59:26 Download gff for RH28890.complete
Subject Subject Range Query Range Percent Splice Strand
CG10253-RA 2..2372 6..2376 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:13:33 Download gff for RH28890.complete
Subject Subject Range Query Range Percent Splice Strand
CG10253-RA 1..2376 3..2376 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:06:04 Download gff for RH28890.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14930083..14930627 1832..2376 100 <- Minus
2R 14930687..14930791 1727..1831 100 <- Minus
2R 14931152..14932340 538..1726 100 <- Minus
2R 14932402..14932488 451..537 100 <- Minus
2R 14932855..14933300 1..450 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:06:04 Download gff for RH28890.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14930083..14930627 1832..2376 100 <- Minus
2R 14930687..14930791 1727..1831 100 <- Minus
2R 14931152..14932340 538..1726 100 <- Minus
2R 14932402..14932488 451..537 100 <- Minus
2R 14932855..14933300 1..450 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:06:04 Download gff for RH28890.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14930083..14930627 1832..2376 100 <- Minus
2R 14930687..14930791 1727..1831 100 <- Minus
2R 14931152..14932340 538..1726 100 <- Minus
2R 14932402..14932488 451..537 100 <- Minus
2R 14932855..14933300 1..450 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:15:26 Download gff for RH28890.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10817588..10818132 1832..2376 100 <- Minus
arm_2R 10818192..10818296 1727..1831 100 <- Minus
arm_2R 10818657..10819845 538..1726 100 <- Minus
arm_2R 10819907..10819993 451..537 100 <- Minus
arm_2R 10820360..10820805 1..450 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:32:17 Download gff for RH28890.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14931282..14931826 1832..2376 100 <- Minus
2R 14931886..14931990 1727..1831 100 <- Minus
2R 14932351..14933539 538..1726 100 <- Minus
2R 14933601..14933687 451..537 100 <- Minus
2R 14934054..14934499 1..450 99   Minus

RH28890.pep Sequence

Translation from 325 to 2220

> RH28890.pep
MAAKRNAVTTEAPESSAPGEGTALALDSRLSKRVESVIPKKRHEALKWFG
WGYNDSQFYGKDGIICFRGEKYPLGGCELPSFTKWVEKKFDLRVDTTKQY
PQLPRTYPRPVENAPFLHELKGTTQVDYSAEGIDRLVRCHGQTLNDIYSL
WHHKFRRIPDLVVWPRCHDEVVQLVRLANKHNVMLVPFGGGTSVSGAITC
PQNESRMICALDTSQMNRLLWLNRENLTVCFESGIVGQDLERVLRSEGLT
VGHEPDSYEFSTLGGWVATRASGMKKNVYGNIEDLVVRVRMVTPSGTLER
ECSAPRVSCGPDFNHVILGSEGTLGVITEVVLKVRPLPSLRRYGSLAFPN
FEQGVLFMREVARRRCQPASVRLMDNEQFMFGQALKPEKSWWASVVDAMK
QRYVTSWKGIDLNQICAATLLFEGDLKDVQRQEALIYEIAEKFQGFPAGG
QNGERGYILTFVIAYIRDFGLHQGIVAESFETSVPWDRCSLLCRSVKQRV
VSECSKRSINYYTISCRVTQTYDAGACIYFYFGFRSTDVADPVELFEAIE
HSARDEILSCGGSLSHHHGVGKIRSHWYRNAVTETGSSLYSAAKRHLDPK
NIFALGNLLPLEEAQASPPPPTSSTPPKAKL*

RH28890.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:05:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12633-PA 637 GF12633-PA 1..637 1..631 3038 87.4 Plus
Dana\GF21462-PA 473 GF21462-PA 49..224 154..332 170 27.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:05:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22382-PA 636 GG22382-PA 1..636 1..631 3290 96.1 Plus
Dere\GG12909-PA 531 GG12909-PA 107..282 154..332 171 27.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:05:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20803-PA 627 GH20803-PA 1..608 1..610 2760 80.8 Plus
Dgri\GH24571-PA 486 GH24571-PA 53..237 146..332 186 29.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:15
Subject Length Description Subject Range Query Range Score Percent Strand
ADPS-PC 631 CG10253-PC 1..631 1..631 3355 100 Plus
ADPS-PB 631 CG10253-PB 1..631 1..631 3355 100 Plus
ADPS-PD 631 CG10253-PD 1..631 1..631 3355 100 Plus
ADPS-PA 631 CG10253-PA 1..631 1..631 3355 100 Plus
D2hgdh-PA 533 CG3835-PA 116..282 161..330 173 28.7 Plus
D2hgdh-PC 533 CG3835-PC 116..282 161..330 173 28.7 Plus
D2hgdh-PB 533 CG3835-PB 116..282 161..330 173 28.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:05:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20890-PA 635 GI20890-PA 1..611 1..613 2844 83.8 Plus
Dmoj\GI11068-PA 530 GI11068-PA 106..281 154..332 175 28.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:05:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11706-PA 596 GL11706-PA 5..575 43..613 2814 89.3 Plus
Dper\GL14161-PA 513 GL14161-PA 89..264 154..332 177 29.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:05:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24243-PA 641 GA24243-PA 1..614 1..613 2978 88.6 Plus
Dpse\GA17719-PA 513 GA17719-PA 89..264 154..332 177 29.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:05:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20165-PA 635 GM20165-PA 1..635 1..631 3363 98.6 Plus
Dsec\GM19199-PA 533 GM19199-PA 109..284 154..332 172 27.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:05:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25643-PA 635 GD25643-PA 1..635 1..631 3349 98.1 Plus
Dsim\GD16587-PA 533 GD16587-PA 109..284 154..332 174 27.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:05:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20622-PA 642 GJ20622-PA 1..611 1..613 2860 84.7 Plus
Dvir\GJ16929-PA 520 GJ16929-PA 96..271 154..332 168 27.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:05:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21804-PA 628 GK21804-PA 1..628 1..631 2931 85.8 Plus
Dwil\GK10230-PA 521 GK10230-PA 97..272 154..332 177 29.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:05:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12271-PA 636 GE12271-PA 1..636 1..631 3329 97.6 Plus
Dyak\GE16237-PA 532 GE16237-PA 108..283 154..332 169 27.9 Plus

RH28890.hyp Sequence

Translation from 325 to 2220

> RH28890.hyp
MAAKRNAVTTEAPESSAPGEGTALALDSRLSKRVESVIPKKRHEALKWFG
WGYNDSQFYGKDGIICFRGEKYPLGGCELPSFTKWVEKKFDLRVDTTKQY
PQLPRTYPRPVENAPFLHELKGTTQVDYSAEGIDRLVRCHGQTLNDIYSL
WHHKFRRIPDLVVWPRCHDEVVQLVRLANKHNVMLVPFGGGTSVSGAITC
PQNESRMICALDTSQMNRLLWLNRENLTVCFESGIVGQDLERVLRSEGLT
VGHEPDSYEFSTLGGWVATRASGMKKNVYGNIEDLVVRVRMVTPSGTLER
ECSAPRVSCGPDFNHVILGSEGTLGVITEVVLKVRPLPSLRRYGSLAFPN
FEQGVLFMREVARRRCQPASVRLMDNEQFMFGQALKPEKSWWASVVDAMK
QRYVTSWKGIDLNQICAATLLFEGDLKDVQRQEALIYEIAEKFQGFPAGG
QNGERGYILTFVIAYIRDFGLHQGIVAESFETSVPWDRCSLLCRSVKQRV
VSECSKRSINYYTISCRVTQTYDAGACIYFYFGFRSTDVADPVELFEAIE
HSARDEILSCGGSLSHHHGVGKIRSHWYRNAVTETGSSLYSAAKRHLDPK
NIFALGNLLPLEEAQASPPPPTSSTPPKAKL*

RH28890.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:04:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG10253-PC 631 CG10253-PC 1..631 1..631 3355 100 Plus
CG10253-PB 631 CG10253-PB 1..631 1..631 3355 100 Plus
CG10253-PD 631 CG10253-PD 1..631 1..631 3355 100 Plus
CG10253-PA 631 CG10253-PA 1..631 1..631 3355 100 Plus
CG3835-PA 533 CG3835-PA 116..282 161..330 173 28.7 Plus