BDGP Sequence Production Resources |
Search the DGRC for RH29536
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 295 |
Well: | 36 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG6330-RB |
Protein status: | RH29536.pep: gold |
Sequenced Size: | 2086 |
Gene | Date | Evidence |
---|---|---|
CG6330-RB | 2009-06-22 | Replacement based on scoring |
2086 bp assembled on 2009-09-22
GenBank Submission: BT099788.1
> RH29536.complete GAGTTGGTTTCCAAACCTCGCGCAGCTCTGTTCGTCGCTCTTCTGTCCGT TTTGCCATTGCGATTTAGTATCGGAAAAGAGAGTGTGTAGAAGAGGAAGA AAGCGTTCCTGTTTGCTTCACGTGCCTACAGATAAACAAAGCAATTCAGC AATCGAAATACCAACGAGAATATCGTGACAAGGCAACGCGATATAATAAT AGTGCTGCGATTTTCTTTATTTGGTGCATATCAGGCAAATTACAGCCAAG AGGCAACAACACAACACCTAGAACTCTTTACGCTCCCACCGCAAGATGTC GCTGCTGCTCACCGGAAACAGTGCCTCCCTTTCCGAGGAGGAGCTCGACG AGTACTCCGATGGAACCGTCAAATTGCGCAACTCGAACATTGAGCTCATG GACCAGGATATCCTCTATCACCTGGCCTTGGGCAGCGAGAGCCACGACCT GCAGGAGATGTTTGGCGACGTTAAGTTCGTTTGCATGGGCGGCACACCAA AGCGCATGGAGAATTTTGCCCATTTCATAATGAACGAGATTGGCTACAAG TTGCCAGCGGGCACCCAGCTGCAGGACATCAGCGCCTATTCGTATCGCTA CTCCATGTACAAAGTGGGACCGGTGCTGTGCGTCAGCCATGGCATGGGTA CGCCCTCGGTCAGCATCCTGATGCATGAGATGATCAAGCTGATGTACCAC GCCAAGTGCAAGGATCCCGTCTTCATCAGGATAGGAACGTGCGGAGGAAT TGGCGTCGACGGCGGCACCGTCATCATCACCGAAGATGCCCTCGATGGGC AGCTGAGGAACTCCCATGAGTTTACCATTCTCGGCAAGACCATCCATCGT CCTGCCAAGCTGGACAAAAAGCTGGCCCGTGAGCTAAAGTCCCTGGCCAG TCCCGATGATCCGTACGATACCATTATTGGCAAGACGCTGTGCACCAACG ATTTCTACGAGGGCCAGGGTCGTTTGGACGGCGCATTCTGTGATTTCAGC GAGAACGAGAAGATGGCCTATCTGGAGAAGCTGCGCGAGAACGGCGTGGT CAACATCGAGATGGAGAGCACCATCTTTGCGGCCCTGACCCACCATGCCG GCATCAAGGCAGCGGTGGTGTGTGTCGCCCTGCTGAACCGCCTCAATGGG GATCAGGTCAACGCGCCCAAGGAGGTCATGAACGAGTGGCAAGCGCGTCC GCAGATCCTCGTGTCGCGCTATATTCGCAAGGTCCTTACGCACAATGGAC AGCTGAAGGCGCTATTCGGACACCAGGGATCCATCAAGTCACCCCGGCGC TTCAAGCTCGTCCAGCAGGAGTCTCAGGCCCACGAGTAAATGGGATCATG TGACCAGTTCCATCTCATTTCACCTTCTTACATTATATGTGCGCATCTCT CCAGTATACAATGATGTTTCAACATTCCCTAGTTTAGCTCTGATTAAGTT CCTAGCTTTATTTCTGTGTATATCGCCCACAACCTCATCGGATAATTTAA AACCGATCATATTGTACGTGCATATGTTCATATGTTACCACAATTTAATA TATATATGTATATCAATAATATATAAAAATAGTATCACTGAGTGTGACGT TCAAAGGTTATCAGAAATAAACGCTTTTGAGATCACAAAACAAATAACGA ATAATATAGAAGAATTATGAAATTGTTAATTGTTATGTTGCATATTTTAA ATGGGGCTAATCTATTAAGCAAAGATTCAACAATACCAAACAAAACTAAA TGCTACATTTCCATTTTATAAATTATTATATTATAATGTATTGAAATTCC TAAAGATTTGTTAAATGTACGTGTTGATTAGTGTTGCTACCGTACACTCG ACTCTAAACCAAATCCAACAGCACTTAATCTTTCTCTGTCTAGTTATATC CAAATTAAATGAAAACAATACGATGAAGAACAAAATGCTGAAAATAACAT CAATACAATTACGGATAGCACACGATAAAACCAAATATACAAGTTATATT GTAAAAAAACGAAATTTATGACAAATATTTCAACGGTATATTAAAAGAAA TTGTAATTAAATTATACAAACCAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 22772730..22773607 | 2072..1195 | 4360 | 99.8 | Minus |
chr3R | 27901430 | chr3R | 22773676..22774047 | 1195..824 | 1815 | 99.2 | Minus |
chr3R | 27901430 | chr3R | 22774110..22774466 | 823..467 | 1725 | 98.9 | Minus |
chr3R | 27901430 | chr3R | 22781250..22781530 | 282..2 | 1360 | 98.9 | Minus |
chr3R | 27901430 | chr3R | 22774813..22774936 | 475..352 | 620 | 100 | Minus |
chr3R | 27901430 | chr3R | 22779554..22779626 | 354..282 | 365 | 100 | Minus |
chr2R | 21145070 | chr2R | 18819267..18819443 | 777..601 | 360 | 80.2 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 26949691..26950569 | 2073..1195 | 4395 | 100 | Minus |
3R | 32079331 | 3R | 26950638..26951009 | 1195..824 | 1860 | 100 | Minus |
3R | 32079331 | 3R | 26951072..26951428 | 823..467 | 1755 | 99.4 | Minus |
3R | 32079331 | 3R | 26958207..26958487 | 282..2 | 1405 | 100 | Minus |
3R | 32079331 | 3R | 26951775..26951898 | 475..352 | 620 | 100 | Minus |
3R | 32079331 | 3R | 26956517..26956589 | 354..282 | 365 | 100 | Minus |
2R | 25286936 | 2R | 22932746..22932922 | 777..601 | 345 | 79.7 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 26690522..26691400 | 2073..1195 | 4395 | 100 | Minus |
3R | 31820162 | 3R | 26691469..26691840 | 1195..824 | 1860 | 100 | Minus |
3R | 31820162 | 3R | 26691903..26692259 | 823..467 | 1755 | 99.4 | Minus |
3R | 31820162 | 3R | 26699038..26699318 | 282..2 | 1405 | 100 | Minus |
3R | 31820162 | 3R | 26692606..26692729 | 475..352 | 620 | 100 | Minus |
3R | 31820162 | 3R | 26697348..26697420 | 354..282 | 365 | 100 | Minus |
2R | 25260384 | 2R | 22933945..22934121 | 777..601 | 345 | 79.6 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 22772730..22773606 | 1196..2072 | 92 | <- | Minus |
chr3R | 22773676..22774047 | 824..1195 | 99 | <- | Minus |
chr3R | 22774110..22774457 | 476..823 | 99 | <- | Minus |
chr3R | 22774813..22774936 | 352..475 | 100 | <- | Minus |
chr3R | 22779557..22779626 | 282..351 | 100 | <- | Minus |
chr3R | 22781251..22781530 | 1..281 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6330-RB | 1..1044 | 296..1339 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6330-RB | 1..1044 | 296..1339 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6330-RB | 1..1044 | 296..1339 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6330-RB | 1..1044 | 296..1339 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6330-RB | 1..1640 | 2..1641 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6330-RB | 1..1640 | 2..1641 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6330-RB | 4..2075 | 1..2072 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6330-RB | 4..2075 | 1..2072 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 26956520..26956589 | 282..351 | 100 | <- | Minus |
3R | 26949692..26950568 | 1196..2072 | 100 | <- | Minus |
3R | 26950638..26951009 | 824..1195 | 100 | <- | Minus |
3R | 26951072..26951419 | 476..823 | 100 | <- | Minus |
3R | 26951775..26951898 | 352..475 | 100 | <- | Minus |
3R | 26958208..26958487 | 1..281 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 26956520..26956589 | 282..351 | 100 | <- | Minus |
3R | 26949692..26950568 | 1196..2072 | 100 | <- | Minus |
3R | 26950638..26951009 | 824..1195 | 100 | <- | Minus |
3R | 26951072..26951419 | 476..823 | 100 | <- | Minus |
3R | 26951775..26951898 | 352..475 | 100 | <- | Minus |
3R | 26958208..26958487 | 1..281 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 26956520..26956589 | 282..351 | 100 | <- | Minus |
3R | 26949692..26950568 | 1196..2072 | 100 | <- | Minus |
3R | 26950638..26951009 | 824..1195 | 100 | <- | Minus |
3R | 26951072..26951419 | 476..823 | 100 | <- | Minus |
3R | 26951775..26951898 | 352..475 | 100 | <- | Minus |
3R | 26958208..26958487 | 1..281 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 22775414..22776290 | 1196..2072 | 100 | <- | Minus |
arm_3R | 22776360..22776731 | 824..1195 | 100 | <- | Minus |
arm_3R | 22776794..22777141 | 476..823 | 100 | <- | Minus |
arm_3R | 22777497..22777620 | 352..475 | 100 | <- | Minus |
arm_3R | 22782242..22782311 | 282..351 | 100 | <- | Minus |
arm_3R | 22783930..22784209 | 1..281 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 26699039..26699318 | 1..281 | 99 | Minus | |
3R | 26690523..26691399 | 1196..2072 | 100 | <- | Minus |
3R | 26691469..26691840 | 824..1195 | 100 | <- | Minus |
3R | 26691903..26692250 | 476..823 | 100 | <- | Minus |
3R | 26692606..26692729 | 352..475 | 100 | <- | Minus |
3R | 26697351..26697420 | 282..351 | 100 | <- | Minus |
Translation from 295 to 1338
> RH29536.pep MSLLLTGNSASLSEEELDEYSDGTVKLRNSNIELMDQDILYHLALGSESH DLQEMFGDVKFVCMGGTPKRMENFAHFIMNEIGYKLPAGTQLQDISAYSY RYSMYKVGPVLCVSHGMGTPSVSILMHEMIKLMYHAKCKDPVFIRIGTCG GIGVDGGTVIITEDALDGQLRNSHEFTILGKTIHRPAKLDKKLARELKSL ASPDDPYDTIIGKTLCTNDFYEGQGRLDGAFCDFSENEKMAYLEKLRENG VVNIEMESTIFAALTHHAGIKAAVVCVALLNRLNGDQVNAPKEVMNEWQA RPQILVSRYIRKVLTHNGQLKALFGHQGSIKSPRRFKLVQQESQAHE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18559-PA | 368 | GF18559-PA | 37..368 | 16..347 | 1628 | 94 | Plus |
Dana\GF11317-PA | 383 | GF11317-PA | 48..346 | 18..314 | 941 | 56.9 | Plus |
Dana\GF18560-PA | 300 | GF18560-PA | 3..297 | 23..314 | 659 | 45.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12162-PA | 368 | GG12162-PA | 20..368 | 7..347 | 1668 | 93.1 | Plus |
Dere\GG20084-PA | 378 | GG20084-PA | 46..346 | 18..317 | 953 | 56.5 | Plus |
Dere\GG24468-PA | 308 | GG24468-PA | 1..306 | 12..314 | 710 | 43.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19373-PA | 346 | GH19373-PA | 3..346 | 4..347 | 1753 | 93.3 | Plus |
Dgri\GH19384-PA | 350 | GH19384-PA | 51..337 | 29..314 | 916 | 56.8 | Plus |
Dgri\GH19395-PA | 301 | GH19395-PA | 7..301 | 25..316 | 733 | 45.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG6330-PB | 347 | CG6330-PB | 1..347 | 1..347 | 1806 | 100 | Plus |
CG6330-PA | 368 | CG6330-PA | 23..368 | 10..347 | 1724 | 96 | Plus |
CG3788-PB | 378 | CG3788-PB | 46..346 | 18..317 | 932 | 57.5 | Plus |
CG3788-PA | 378 | CG3788-PA | 46..346 | 18..317 | 932 | 57.5 | Plus |
CG17224-PD | 300 | CG17224-PD | 2..298 | 21..314 | 693 | 45.2 | Plus |
CG17224-PC | 300 | CG17224-PC | 2..298 | 21..314 | 693 | 45.2 | Plus |
CG17224-PB | 300 | CG17224-PB | 2..298 | 21..314 | 693 | 45.2 | Plus |
CG17224-PA | 300 | CG17224-PA | 2..298 | 21..314 | 693 | 45.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22212-PA | 363 | GI22212-PA | 33..363 | 17..347 | 1676 | 93.1 | Plus |
Dmoj\GI22215-PA | 360 | GI22215-PA | 54..340 | 29..314 | 933 | 57.1 | Plus |
Dmoj\GI22213-PA | 297 | GI22213-PA | 5..296 | 26..314 | 706 | 45.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL27259-PA | 365 | GL27259-PA | 33..365 | 15..347 | 1675 | 91.9 | Plus |
Dper\GL23743-PA | 373 | GL23743-PA | 53..344 | 22..312 | 916 | 55.1 | Plus |
Dper\GL25985-PA | 256 | GL25985-PA | 1..243 | 79..321 | 739 | 54.5 | Plus |
Dper\GL27260-PA | 297 | GL27260-PA | 5..295 | 25..314 | 715 | 44.7 | Plus |
Dper\GL25965-PA | 223 | GL25965-PA | 73..218 | 24..170 | 454 | 55.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19516-PB | 347 | GA19516-PB | 1..347 | 1..347 | 1746 | 92.8 | Plus |
Dpse\GA19516-PA | 365 | GA19516-PA | 33..365 | 15..347 | 1675 | 91.9 | Plus |
Dpse\GA26722-PA | 373 | GA26722-PA | 53..344 | 22..312 | 915 | 55.1 | Plus |
Dpse\GA23650-PA | 377 | GA23650-PA | 63..353 | 24..314 | 887 | 54.8 | Plus |
Dpse\GA27021-PA | 297 | GA27021-PA | 5..295 | 25..314 | 720 | 44.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10155-PA | 347 | GM10155-PA | 1..347 | 1..347 | 1861 | 99.4 | Plus |
Dsec\GM15599-PA | 378 | GM15599-PA | 46..346 | 18..317 | 969 | 57.5 | Plus |
Dsec\GM18176-PA | 300 | GM18176-PA | 2..298 | 21..314 | 719 | 45.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18110-PA | 347 | GD18110-PA | 1..347 | 1..347 | 1861 | 99.4 | Plus |
Dsim\GD25095-PA | 378 | GD25095-PA | 46..346 | 18..317 | 971 | 57.8 | Plus |
Dsim\GD12000-PA | 279 | GD12000-PA | 2..279 | 21..295 | 675 | 46.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24332-PA | 346 | GJ24332-PA | 3..346 | 4..347 | 1711 | 90.7 | Plus |
Dvir\GJ24333-PA | 343 | GJ24333-PA | 37..323 | 29..314 | 969 | 59.9 | Plus |
Dvir\GJ24335-PA | 303 | GJ24335-PA | 1..283 | 35..314 | 784 | 50.5 | Plus |
Dvir\GJ24336-PA | 299 | GJ24336-PA | 5..297 | 25..314 | 755 | 48.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11445-PA | 368 | GK11445-PA | 20..368 | 7..347 | 1695 | 90.3 | Plus |
Dwil\GK15591-PA | 371 | GK15591-PA | 49..345 | 19..314 | 913 | 54.9 | Plus |
Dwil\GK11446-PA | 299 | GK11446-PA | 4..298 | 24..314 | 756 | 45.9 | Plus |
Dwil\GK11364-PA | 363 | GK11364-PA | 30..344 | 2..314 | 732 | 45.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10606-PA | 347 | GE10606-PA | 1..347 | 1..347 | 1859 | 99.1 | Plus |
Dyak\GE11621-PA | 382 | GE11621-PA | 46..346 | 18..317 | 960 | 57.1 | Plus |
Dyak\GE14961-PA | 300 | GE14961-PA | 2..298 | 21..314 | 714 | 44.8 | Plus |
Translation from 295 to 1338
> RH29536.hyp MSLLLTGNSASLSEEELDEYSDGTVKLRNSNIELMDQDILYHLALGSESH DLQEMFGDVKFVCMGGTPKRMENFAHFIMNEIGYKLPAGTQLQDISAYSY RYSMYKVGPVLCVSHGMGTPSVSILMHEMIKLMYHAKCKDPVFIRIGTCG GIGVDGGTVIITEDALDGQLRNSHEFTILGKTIHRPAKLDKKLARELKSL ASPDDPYDTIIGKTLCTNDFYEGQGRLDGAFCDFSENEKMAYLEKLRENG VVNIEMESTIFAALTHHAGIKAAVVCVALLNRLNGDQVNAPKEVMNEWQA RPQILVSRYIRKVLTHNGQLKALFGHQGSIKSPRRFKLVQQESQAHE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG6330-PB | 347 | CG6330-PB | 1..347 | 1..347 | 1806 | 100 | Plus |
CG6330-PA | 368 | CG6330-PA | 23..368 | 10..347 | 1724 | 96 | Plus |
CG3788-PB | 378 | CG3788-PB | 46..346 | 18..317 | 932 | 57.5 | Plus |
CG3788-PA | 378 | CG3788-PA | 46..346 | 18..317 | 932 | 57.5 | Plus |
CG17224-PD | 300 | CG17224-PD | 2..298 | 21..314 | 693 | 45.2 | Plus |