BDGP Sequence Production Resources |
Search the DGRC for RH29724
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 297 |
Well: | 24 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG17378-RA |
Protein status: | RH29724.pep: gold |
Preliminary Size: | 1770 |
Sequenced Size: | 3151 |
Gene | Date | Evidence |
---|---|---|
CG17378 | 2002-01-01 | Sim4 clustering to Release 2 |
CG17378 | 2002-05-16 | Blastp of sequenced clone |
CG17378 | 2003-01-01 | Sim4 clustering to Release 3 |
CG17378 | 2008-04-29 | Release 5.5 accounting |
CG17378 | 2008-08-15 | Release 5.9 accounting |
CG17378 | 2008-12-18 | 5.12 accounting |
3151 bp (3151 high quality bases) assembled on 2002-05-16
GenBank Submission: AY119166
> RH29724.complete GATTCGCGAAATGTTCGCTGCAGGCAATGGACGCGAGTGGAAAACTCAAA GGAAAATATTTACGGTTAGCCTGCCGCCATCGTGTTGCGTGTACAAAAGG GGCGTGTGCGTGCGCTAGTGTGTGTGAGAGAGTGTGTAGTTGTGGGCCAG GGGAATTGAGAATTTACTAGTAGTATCCCAGTTGGGCGCTCAAGCAGTAC GTGCGAAAAATTAAGCGTTAAAAAAGTGCCTTTATAATTTACCGATTATC CTGACATTACTTTGCCCTATACTAGTTTAGTAGCCCAAAAACCTACGATC ATTCAATCAGGTATATATTTAAAACAAAAGAAGCTGAGTGTTTGCTTAGC AAAAAGTTGCATAAATTGGCAAAAATAATAATGAAAATTAATCAAAAAGG GTGACGAATTTAAGGTACAAGAATTTAAGCTTGCAAAGTACATGAAGTGC GCCAAAAAAACTGCAGTGCAATGTTCACCTTCACCCAGTGTGTATGACAT GCAGGCAAATGAAAAATCGATACCAGAAGCATCAGCAGTTGCAACGCTCT ACGACCGCTCCCAATTAGCCACAAGGAACTGCATCATCGCGCAGCAGGTC CCTTGAGCCCGAACATCGTACTTCCAGTGGACTTGGGGCAGGACACTATC TCCATGGTGGATGCCAAGCCGCAGCCACCCACTCCGGGCGCAATGCCTGG AACGGGAACACCGCCGGGCGGATTCGCCGGCGAGCGATCGAAGATCAAAC TGTTCATGGAACGGACGCCCAGCATTGGAGCCCTCAAGTCCAAGTTCCTC ACCGTGCTGGGCAACAGCAACGAGCTGCTCAACGGAATATCGAACAAGCT GACCCTGAGCAGCAGTTCCAGCGACTCTGATTACTGCGATGACGATGAAG ATATACCCAAGTTTGACGAGAGCATTGATTATACCAAGATCGACTTCGAA GGACGACGTGTGAAGGCGCGACGAGCTCACGAGGAGATCATCTCAGGACG ATATCGTCAGCCCAATTTGGCACCGAGGCCACGTCTGGAACCATCACGTG GGCGTCATGCGGCCAGCAAACTGGGTGCACCCCTTCGCTCCAGCTCCGGC TCCTCGAGCAGCTCCAGCAGCAGCGACGACAGCAGCTCTGTATCCCTGCC CGAGCATATGGCCAATCGTTCTCATGACGTGAGCAGCACCACACGCTCGG ATTCCATAGAGTCGCGTCACTCCGGCGGATATGAGAGGGCCAGGGCAATC GCAGGAGCCCGTCGCAGCGAGATGGACATGCAAAAGGATGTCCAGAGGAT CGGCGAAGTGGGCGACACTGTGCCGCCGCACATAGATGTTCAGCCGCCGA CGGAGGCGGGAGCGGGATCCGGAGGACGGCAGCAGTGGGCGGGCGGAAGC AACTCGATGCGCCTTCCGTCGCGCAGTCGCGCCTCGAACAGCAGCACTCT GACCAGCCTGCGCGATGAGCCGGATCAGCTATTGGCCAGCCCCAGCATGG AGTCCACCGACTGGCGGCACTTTATCCGATCGGAGTCGCAGAACTCGGTG CCCTCATGGGCTTCCTCCATCAGCCTGGATTGCCGAGCGGGCGAGGAACC GGTCAAGGAGTTTATGAAGCACTTTACCGCTCTGCTATTTGGCGGATCTC CGGGAGCCGTTGATCTTGAGCTGAAGTCGGAGTTTGGCGTATTGCTGCGT CTGGAGATCGGTCGACTGTGGTTCACCCGCTTTCTCACCGAGCAGCGCCA CAAGTCCAAGCGACTGGACTCGGTCACGTTCGGCAGTCTGGCCCAATACT TTGCACTGGCCCTGTTTGAGTGCAGCGAGTGCGAGGATTATGGCCCGGCT GCGGTACTGATGAACCTCTGTTTCCTTTTCTACCACGAGGTCGAGGTGCC CGGCTGCGATCCTTATCGCGAGTACCTGTTCTCCTCGCTGCGCCAGCAAC CCATCTGGCAGCAGGCGCGGTTCTGGAACGCAATCTTCCACGACGGCATG CAGGCGGAACGGGAGCATCGGGGTCAGAGCCAGATGAGGCGCCAAAAGCG TCGACAGCAGAAGCAGCAGCAACGGCAGGCAGCTGCCGGAGCAGGATCAG GAGCGGGAACTGCAGATGGCCCGCCTACCAAGTCGCAGCGCAAACAGGGC GGCGACTCCTCCTCCAGCTCCTCGCATCAGGCGGCACAGTCGGGCACTCC GGCGGCTCAAGCCTGCACTGGTTCCATTCCAGCCAACCGGAGGCCCAGCA AGACCAGTCTCACCCAGGCGCATTCGCTTCGGGACCAGGAGGACATTGCA TTTCGGCAGCTTGGGGCATTGACGTGCAATATGCACTCACTGGGGACATC CCAGGAATTGTGCCTTGACTTTCTGAAAAAGAACGTGGTGGCCCATAACC TATCCAAGGATAAAGCCAAACTAATCAGAGACAATATATATCGAATGTAC CATGAGACGCAACTTTGGGGAGCTCGACACGCCTGAGCAGTAACAATTGT AAAAGTACCTAACAAAATCGAGTTTCAATCTTCGTCTCAACTAAAGCTAA ACTTTTGTCTTAAGTCAGCCGACACCTCGAAACTAATCCTAACTAAAGTA GCAGATCAATGAAGTTTTATCTGAAATCTGGTGTTTTTACTCGCGTTGTC GTAACCGTAAAGATATTAATACGATAGTCATTCTTGTAACTGGATTTGAA ATATAATGAATGTATGGGGAAATGCTTGTATTTATTTTAACATCTATAAA GACGAATATTATATAATGTTGTTAATAAATTGGGATTTCTAAAGACGTCA TCGTTCAATTTTCAACGTAGCTAAACAAATTGGAATCGCATATCAAAATT AAGTTTGGAATCAAAACCAGTTACAAGAACATCCGTACTGCGAATGATAA GAGGGCACTTTAACCAATACTGTACGTGTATCCATAAATTGTGATAATAA TATTTTGTGATTACTTTATATAGACCTAAATACTATGAAATTATGCAGTG CATATAGTTAAAATATCGCAGTTTAAATTGTTACAAATCAAGATCAATAA CTATGCTATAACTATGTTTGTAATGAAAGAGATAATATTTCGCAATTGTT TAATACATTCAAATTAATAAAAGTCTAACGAAATTCAAAAAAAAAAAAAA A
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG17378-RA | 3201 | CG17378-RA | 55..3196 | 2..3143 | 15710 | 100 | Plus |
CG17378-RB | 2052 | CG17378-RB | 133..1962 | 847..2676 | 9150 | 100 | Plus |
CG17378-RB | 2052 | CG17378-RB | 1963..2052 | 2878..2967 | 450 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 6775178..6776466 | 1027..2315 | 6400 | 99.8 | Plus |
chr2L | 23010047 | chr2L | 6773080..6773926 | 2..848 | 4235 | 100 | Plus |
chr2L | 23010047 | chr2L | 6776833..6777482 | 2486..3135 | 3235 | 99.8 | Plus |
chr2L | 23010047 | chr2L | 6775004..6775118 | 913..1027 | 575 | 100 | Plus |
chr2L | 23010047 | chr2L | 6776538..6776638 | 2314..2414 | 490 | 99 | Plus |
chr2L | 23010047 | chr2L | 6776695..6776773 | 2409..2487 | 395 | 100 | Plus |
chr2L | 23010047 | chr2L | 6774868..6774937 | 847..916 | 320 | 97.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 6776139..6777427 | 1027..2315 | 6445 | 100 | Plus |
2L | 23513712 | 2L | 6774041..6774887 | 2..848 | 4235 | 100 | Plus |
2L | 23513712 | 2L | 6777794..6778451 | 2486..3143 | 3290 | 100 | Plus |
2L | 23513712 | 2L | 6775965..6776079 | 913..1027 | 575 | 100 | Plus |
2L | 23513712 | 2L | 6777499..6777599 | 2314..2414 | 490 | 99 | Plus |
2L | 23513712 | 2L | 6777656..6777734 | 2409..2487 | 395 | 100 | Plus |
2L | 23513712 | 2L | 6775829..6775898 | 847..916 | 335 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 6776139..6777427 | 1027..2315 | 6445 | 100 | Plus |
2L | 23513712 | 2L | 6774041..6774887 | 2..848 | 4235 | 100 | Plus |
2L | 23513712 | 2L | 6777794..6778451 | 2486..3143 | 3290 | 100 | Plus |
2L | 23513712 | 2L | 6775965..6776079 | 913..1027 | 575 | 100 | Plus |
2L | 23513712 | 2L | 6777499..6777599 | 2314..2414 | 490 | 99 | Plus |
2L | 23513712 | 2L | 6777656..6777734 | 2409..2487 | 395 | 100 | Plus |
2L | 23513712 | 2L | 6775829..6775898 | 847..916 | 335 | 98.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6850 | 2000..2115 | 163 | 61.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1064..1122 | 2055..2114 | 144 | 73.3 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1064..1146 | 2031..2114 | 138 | 64.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2411 | 2043..2115 | 136 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6756..6865 | 2008..2115 | 131 | 59.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6903 | 1988..2117 | 130 | 58.6 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 6773078..6773926 | 1..848 | 99 | -> | Plus |
chr2L | 6774870..6774933 | 849..912 | 98 | -> | Plus |
chr2L | 6775004..6775117 | 913..1026 | 100 | -> | Plus |
chr2L | 6775178..6776197 | 1027..2046 | 99 | == | Plus |
chr2L | 6776267..6776465 | 2116..2314 | 100 | -> | Plus |
chr2L | 6776539..6776633 | 2315..2409 | 100 | -> | Plus |
chr2L | 6776696..6776773 | 2410..2487 | 100 | -> | Plus |
chr2L | 6776835..6777482 | 2488..3136 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17378-RA | 1..1833 | 654..2486 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17378-RA | 1..1833 | 654..2486 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17378-RA | 1..1833 | 654..2486 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17378-RA | 1..1833 | 654..2486 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17378-RA | 1..1833 | 654..2486 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17378-RA | 1..3137 | 1..3136 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17378-RA | 1..3137 | 1..3136 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17378-RA | 1..3135 | 2..3136 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17378-RA | 1..3137 | 1..3136 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17378-RA | 1..3135 | 2..3136 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6774039..6774887 | 1..848 | 99 | -> | Plus |
2L | 6775831..6775894 | 849..912 | 100 | -> | Plus |
2L | 6775965..6776078 | 913..1026 | 100 | -> | Plus |
2L | 6776139..6777426 | 1027..2314 | 100 | -> | Plus |
2L | 6777500..6777594 | 2315..2409 | 100 | -> | Plus |
2L | 6777657..6777734 | 2410..2487 | 100 | -> | Plus |
2L | 6777796..6778444 | 2488..3136 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6774039..6774887 | 1..848 | 99 | -> | Plus |
2L | 6775831..6775894 | 849..912 | 100 | -> | Plus |
2L | 6775965..6776078 | 913..1026 | 100 | -> | Plus |
2L | 6776139..6777426 | 1027..2314 | 100 | -> | Plus |
2L | 6777500..6777594 | 2315..2409 | 100 | -> | Plus |
2L | 6777657..6777734 | 2410..2487 | 100 | -> | Plus |
2L | 6777796..6778444 | 2488..3136 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6774039..6774887 | 1..848 | 99 | -> | Plus |
2L | 6775831..6775894 | 849..912 | 100 | -> | Plus |
2L | 6775965..6776078 | 913..1026 | 100 | -> | Plus |
2L | 6776139..6777426 | 1027..2314 | 100 | -> | Plus |
2L | 6777500..6777594 | 2315..2409 | 100 | -> | Plus |
2L | 6777657..6777734 | 2410..2487 | 100 | -> | Plus |
2L | 6777796..6778444 | 2488..3136 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 6775965..6776078 | 913..1026 | 100 | -> | Plus |
arm_2L | 6774039..6774887 | 1..848 | 99 | -> | Plus |
arm_2L | 6775831..6775894 | 849..912 | 100 | -> | Plus |
arm_2L | 6776139..6777426 | 1027..2314 | 100 | -> | Plus |
arm_2L | 6777500..6777594 | 2315..2409 | 100 | -> | Plus |
arm_2L | 6777657..6777734 | 2410..2487 | 100 | -> | Plus |
arm_2L | 6777796..6778444 | 2488..3136 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6774039..6774887 | 1..848 | 99 | -> | Plus |
2L | 6775831..6775894 | 849..912 | 100 | -> | Plus |
2L | 6775965..6776078 | 913..1026 | 100 | -> | Plus |
2L | 6776139..6777426 | 1027..2314 | 100 | -> | Plus |
2L | 6777500..6777594 | 2315..2409 | 100 | -> | Plus |
2L | 6777657..6777734 | 2410..2487 | 100 | -> | Plus |
2L | 6777796..6778444 | 2488..3136 | 100 | Plus |
Translation from 653 to 2485
> RH29724.pep MVDAKPQPPTPGAMPGTGTPPGGFAGERSKIKLFMERTPSIGALKSKFLT VLGNSNELLNGISNKLTLSSSSSDSDYCDDDEDIPKFDESIDYTKIDFEG RRVKARRAHEEIISGRYRQPNLAPRPRLEPSRGRHAASKLGAPLRSSSGS SSSSSSSDDSSSVSLPEHMANRSHDVSSTTRSDSIESRHSGGYERARAIA GARRSEMDMQKDVQRIGEVGDTVPPHIDVQPPTEAGAGSGGRQQWAGGSN SMRLPSRSRASNSSTLTSLRDEPDQLLASPSMESTDWRHFIRSESQNSVP SWASSISLDCRAGEEPVKEFMKHFTALLFGGSPGAVDLELKSEFGVLLRL EIGRLWFTRFLTEQRHKSKRLDSVTFGSLAQYFALALFECSECEDYGPAA VLMNLCFLFYHEVEVPGCDPYREYLFSSLRQQPIWQQARFWNAIFHDGMQ AEREHRGQSQMRRQKRRQQKQQQRQAAAGAGSGAGTADGPPTKSQRKQGG DSSSSSSHQAAQSGTPAAQACTGSIPANRRPSKTSLTQAHSLRDQEDIAF RQLGALTCNMHSLGTSQELCLDFLKKNVVAHNLSKDKAKLIRDNIYRMYH ETQLWGARHA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15426-PA | 612 | GF15426-PA | 1..612 | 1..610 | 2302 | 82.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10433-PA | 618 | GG10433-PA | 1..618 | 1..610 | 2694 | 92.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10944-PA | 614 | GH10944-PA | 1..612 | 1..608 | 1982 | 74.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG17378-PA | 610 | CG17378-PA | 1..610 | 1..610 | 3171 | 100 | Plus |
CG17378-PC | 561 | CG17378-PC | 16..561 | 65..610 | 2834 | 99.8 | Plus |
CG17378-PB | 561 | CG17378-PB | 16..561 | 65..610 | 2834 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13586-PA | 602 | GI13586-PA | 19..601 | 22..609 | 2034 | 74.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25788-PA | 631 | GL25788-PA | 1..631 | 1..608 | 2073 | 72.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14490-PA | 631 | GA14490-PA | 1..631 | 1..608 | 2072 | 72.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM16216-PA | 606 | GM16216-PA | 1..606 | 1..610 | 3157 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23431-PA | 610 | GD23431-PA | 1..610 | 1..610 | 3212 | 98.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12229-PA | 611 | GJ12229-PA | 19..610 | 22..609 | 1996 | 75.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24807-PA | 590 | GK24807-PA | 19..590 | 24..610 | 2046 | 75.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE14121-PA | 615 | GE14121-PA | 1..615 | 1..610 | 2624 | 92.4 | Plus |
Translation from 653 to 2485
> RH29724.hyp MVDAKPQPPTPGAMPGTGTPPGGFAGERSKIKLFMERTPSIGALKSKFLT VLGNSNELLNGISNKLTLSSSSSDSDYCDDDEDIPKFDESIDYTKIDFEG RRVKARRAHEEIISGRYRQPNLAPRPRLEPSRGRHAASKLGAPLRSSSGS SSSSSSSDDSSSVSLPEHMANRSHDVSSTTRSDSIESRHSGGYERARAIA GARRSEMDMQKDVQRIGEVGDTVPPHIDVQPPTEAGAGSGGRQQWAGGSN SMRLPSRSRASNSSTLTSLRDEPDQLLASPSMESTDWRHFIRSESQNSVP SWASSISLDCRAGEEPVKEFMKHFTALLFGGSPGAVDLELKSEFGVLLRL EIGRLWFTRFLTEQRHKSKRLDSVTFGSLAQYFALALFECSECEDYGPAA VLMNLCFLFYHEVEVPGCDPYREYLFSSLRQQPIWQQARFWNAIFHDGMQ AEREHRGQSQMRRQKRRQQKQQQRQAAAGAGSGAGTADGPPTKSQRKQGG DSSSSSSHQAAQSGTPAAQACTGSIPANRRPSKTSLTQAHSLRDQEDIAF RQLGALTCNMHSLGTSQELCLDFLKKNVVAHNLSKDKAKLIRDNIYRMYH ETQLWGARHA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG17378-PA | 610 | CG17378-PA | 1..610 | 1..610 | 3171 | 100 | Plus |
CG17378-PC | 561 | CG17378-PC | 16..561 | 65..610 | 2834 | 99.8 | Plus |
CG17378-PB | 561 | CG17378-PB | 16..561 | 65..610 | 2834 | 99.8 | Plus |