Clone RH29724 Report

Search the DGRC for RH29724

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:297
Well:24
Vector:pFlc-1
Associated Gene/TranscriptCG17378-RA
Protein status:RH29724.pep: gold
Preliminary Size:1770
Sequenced Size:3151

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17378 2002-01-01 Sim4 clustering to Release 2
CG17378 2002-05-16 Blastp of sequenced clone
CG17378 2003-01-01 Sim4 clustering to Release 3
CG17378 2008-04-29 Release 5.5 accounting
CG17378 2008-08-15 Release 5.9 accounting
CG17378 2008-12-18 5.12 accounting

Clone Sequence Records

RH29724.complete Sequence

3151 bp (3151 high quality bases) assembled on 2002-05-16

GenBank Submission: AY119166

> RH29724.complete
GATTCGCGAAATGTTCGCTGCAGGCAATGGACGCGAGTGGAAAACTCAAA
GGAAAATATTTACGGTTAGCCTGCCGCCATCGTGTTGCGTGTACAAAAGG
GGCGTGTGCGTGCGCTAGTGTGTGTGAGAGAGTGTGTAGTTGTGGGCCAG
GGGAATTGAGAATTTACTAGTAGTATCCCAGTTGGGCGCTCAAGCAGTAC
GTGCGAAAAATTAAGCGTTAAAAAAGTGCCTTTATAATTTACCGATTATC
CTGACATTACTTTGCCCTATACTAGTTTAGTAGCCCAAAAACCTACGATC
ATTCAATCAGGTATATATTTAAAACAAAAGAAGCTGAGTGTTTGCTTAGC
AAAAAGTTGCATAAATTGGCAAAAATAATAATGAAAATTAATCAAAAAGG
GTGACGAATTTAAGGTACAAGAATTTAAGCTTGCAAAGTACATGAAGTGC
GCCAAAAAAACTGCAGTGCAATGTTCACCTTCACCCAGTGTGTATGACAT
GCAGGCAAATGAAAAATCGATACCAGAAGCATCAGCAGTTGCAACGCTCT
ACGACCGCTCCCAATTAGCCACAAGGAACTGCATCATCGCGCAGCAGGTC
CCTTGAGCCCGAACATCGTACTTCCAGTGGACTTGGGGCAGGACACTATC
TCCATGGTGGATGCCAAGCCGCAGCCACCCACTCCGGGCGCAATGCCTGG
AACGGGAACACCGCCGGGCGGATTCGCCGGCGAGCGATCGAAGATCAAAC
TGTTCATGGAACGGACGCCCAGCATTGGAGCCCTCAAGTCCAAGTTCCTC
ACCGTGCTGGGCAACAGCAACGAGCTGCTCAACGGAATATCGAACAAGCT
GACCCTGAGCAGCAGTTCCAGCGACTCTGATTACTGCGATGACGATGAAG
ATATACCCAAGTTTGACGAGAGCATTGATTATACCAAGATCGACTTCGAA
GGACGACGTGTGAAGGCGCGACGAGCTCACGAGGAGATCATCTCAGGACG
ATATCGTCAGCCCAATTTGGCACCGAGGCCACGTCTGGAACCATCACGTG
GGCGTCATGCGGCCAGCAAACTGGGTGCACCCCTTCGCTCCAGCTCCGGC
TCCTCGAGCAGCTCCAGCAGCAGCGACGACAGCAGCTCTGTATCCCTGCC
CGAGCATATGGCCAATCGTTCTCATGACGTGAGCAGCACCACACGCTCGG
ATTCCATAGAGTCGCGTCACTCCGGCGGATATGAGAGGGCCAGGGCAATC
GCAGGAGCCCGTCGCAGCGAGATGGACATGCAAAAGGATGTCCAGAGGAT
CGGCGAAGTGGGCGACACTGTGCCGCCGCACATAGATGTTCAGCCGCCGA
CGGAGGCGGGAGCGGGATCCGGAGGACGGCAGCAGTGGGCGGGCGGAAGC
AACTCGATGCGCCTTCCGTCGCGCAGTCGCGCCTCGAACAGCAGCACTCT
GACCAGCCTGCGCGATGAGCCGGATCAGCTATTGGCCAGCCCCAGCATGG
AGTCCACCGACTGGCGGCACTTTATCCGATCGGAGTCGCAGAACTCGGTG
CCCTCATGGGCTTCCTCCATCAGCCTGGATTGCCGAGCGGGCGAGGAACC
GGTCAAGGAGTTTATGAAGCACTTTACCGCTCTGCTATTTGGCGGATCTC
CGGGAGCCGTTGATCTTGAGCTGAAGTCGGAGTTTGGCGTATTGCTGCGT
CTGGAGATCGGTCGACTGTGGTTCACCCGCTTTCTCACCGAGCAGCGCCA
CAAGTCCAAGCGACTGGACTCGGTCACGTTCGGCAGTCTGGCCCAATACT
TTGCACTGGCCCTGTTTGAGTGCAGCGAGTGCGAGGATTATGGCCCGGCT
GCGGTACTGATGAACCTCTGTTTCCTTTTCTACCACGAGGTCGAGGTGCC
CGGCTGCGATCCTTATCGCGAGTACCTGTTCTCCTCGCTGCGCCAGCAAC
CCATCTGGCAGCAGGCGCGGTTCTGGAACGCAATCTTCCACGACGGCATG
CAGGCGGAACGGGAGCATCGGGGTCAGAGCCAGATGAGGCGCCAAAAGCG
TCGACAGCAGAAGCAGCAGCAACGGCAGGCAGCTGCCGGAGCAGGATCAG
GAGCGGGAACTGCAGATGGCCCGCCTACCAAGTCGCAGCGCAAACAGGGC
GGCGACTCCTCCTCCAGCTCCTCGCATCAGGCGGCACAGTCGGGCACTCC
GGCGGCTCAAGCCTGCACTGGTTCCATTCCAGCCAACCGGAGGCCCAGCA
AGACCAGTCTCACCCAGGCGCATTCGCTTCGGGACCAGGAGGACATTGCA
TTTCGGCAGCTTGGGGCATTGACGTGCAATATGCACTCACTGGGGACATC
CCAGGAATTGTGCCTTGACTTTCTGAAAAAGAACGTGGTGGCCCATAACC
TATCCAAGGATAAAGCCAAACTAATCAGAGACAATATATATCGAATGTAC
CATGAGACGCAACTTTGGGGAGCTCGACACGCCTGAGCAGTAACAATTGT
AAAAGTACCTAACAAAATCGAGTTTCAATCTTCGTCTCAACTAAAGCTAA
ACTTTTGTCTTAAGTCAGCCGACACCTCGAAACTAATCCTAACTAAAGTA
GCAGATCAATGAAGTTTTATCTGAAATCTGGTGTTTTTACTCGCGTTGTC
GTAACCGTAAAGATATTAATACGATAGTCATTCTTGTAACTGGATTTGAA
ATATAATGAATGTATGGGGAAATGCTTGTATTTATTTTAACATCTATAAA
GACGAATATTATATAATGTTGTTAATAAATTGGGATTTCTAAAGACGTCA
TCGTTCAATTTTCAACGTAGCTAAACAAATTGGAATCGCATATCAAAATT
AAGTTTGGAATCAAAACCAGTTACAAGAACATCCGTACTGCGAATGATAA
GAGGGCACTTTAACCAATACTGTACGTGTATCCATAAATTGTGATAATAA
TATTTTGTGATTACTTTATATAGACCTAAATACTATGAAATTATGCAGTG
CATATAGTTAAAATATCGCAGTTTAAATTGTTACAAATCAAGATCAATAA
CTATGCTATAACTATGTTTGTAATGAAAGAGATAATATTTCGCAATTGTT
TAATACATTCAAATTAATAAAAGTCTAACGAAATTCAAAAAAAAAAAAAA
A

RH29724.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:07:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG17378-RA 3201 CG17378-RA 55..3196 2..3143 15710 100 Plus
CG17378-RB 2052 CG17378-RB 133..1962 847..2676 9150 100 Plus
CG17378-RB 2052 CG17378-RB 1963..2052 2878..2967 450 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:22:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6775178..6776466 1027..2315 6400 99.8 Plus
chr2L 23010047 chr2L 6773080..6773926 2..848 4235 100 Plus
chr2L 23010047 chr2L 6776833..6777482 2486..3135 3235 99.8 Plus
chr2L 23010047 chr2L 6775004..6775118 913..1027 575 100 Plus
chr2L 23010047 chr2L 6776538..6776638 2314..2414 490 99 Plus
chr2L 23010047 chr2L 6776695..6776773 2409..2487 395 100 Plus
chr2L 23010047 chr2L 6774868..6774937 847..916 320 97.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:26:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:22:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6776139..6777427 1027..2315 6445 100 Plus
2L 23513712 2L 6774041..6774887 2..848 4235 100 Plus
2L 23513712 2L 6777794..6778451 2486..3143 3290 100 Plus
2L 23513712 2L 6775965..6776079 913..1027 575 100 Plus
2L 23513712 2L 6777499..6777599 2314..2414 490 99 Plus
2L 23513712 2L 6777656..6777734 2409..2487 395 100 Plus
2L 23513712 2L 6775829..6775898 847..916 335 98.6 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:38:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6776139..6777427 1027..2315 6445 100 Plus
2L 23513712 2L 6774041..6774887 2..848 4235 100 Plus
2L 23513712 2L 6777794..6778451 2486..3143 3290 100 Plus
2L 23513712 2L 6775965..6776079 913..1027 575 100 Plus
2L 23513712 2L 6777499..6777599 2314..2414 490 99 Plus
2L 23513712 2L 6777656..6777734 2409..2487 395 100 Plus
2L 23513712 2L 6775829..6775898 847..916 335 98.5 Plus
Blast to na_te.dros performed 2019-03-16 04:22:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6736..6850 2000..2115 163 61.2 Plus
roo 9092 roo DM_ROO 9092bp 1064..1122 2055..2114 144 73.3 Plus
roo 9092 roo DM_ROO 9092bp 1064..1146 2031..2114 138 64.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2337..2411 2043..2115 136 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6756..6865 2008..2115 131 59.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6773..6903 1988..2117 130 58.6 Plus

RH29724.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:23:19 Download gff for RH29724.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6773078..6773926 1..848 99 -> Plus
chr2L 6774870..6774933 849..912 98 -> Plus
chr2L 6775004..6775117 913..1026 100 -> Plus
chr2L 6775178..6776197 1027..2046 99 == Plus
chr2L 6776267..6776465 2116..2314 100 -> Plus
chr2L 6776539..6776633 2315..2409 100 -> Plus
chr2L 6776696..6776773 2410..2487 100 -> Plus
chr2L 6776835..6777482 2488..3136 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:44:28 Download gff for RH29724.complete
Subject Subject Range Query Range Percent Splice Strand
CG17378-RA 1..1833 654..2486 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:50:20 Download gff for RH29724.complete
Subject Subject Range Query Range Percent Splice Strand
CG17378-RA 1..1833 654..2486 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:27:32 Download gff for RH29724.complete
Subject Subject Range Query Range Percent Splice Strand
CG17378-RA 1..1833 654..2486 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:42:55 Download gff for RH29724.complete
Subject Subject Range Query Range Percent Splice Strand
CG17378-RA 1..1833 654..2486 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:37:14 Download gff for RH29724.complete
Subject Subject Range Query Range Percent Splice Strand
CG17378-RA 1..1833 654..2486 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:27:37 Download gff for RH29724.complete
Subject Subject Range Query Range Percent Splice Strand
CG17378-RA 1..3137 1..3136 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:50:19 Download gff for RH29724.complete
Subject Subject Range Query Range Percent Splice Strand
CG17378-RA 1..3137 1..3136 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:27:32 Download gff for RH29724.complete
Subject Subject Range Query Range Percent Splice Strand
CG17378-RA 1..3135 2..3136 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:42:55 Download gff for RH29724.complete
Subject Subject Range Query Range Percent Splice Strand
CG17378-RA 1..3137 1..3136 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:37:14 Download gff for RH29724.complete
Subject Subject Range Query Range Percent Splice Strand
CG17378-RA 1..3135 2..3136 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:23:19 Download gff for RH29724.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6774039..6774887 1..848 99 -> Plus
2L 6775831..6775894 849..912 100 -> Plus
2L 6775965..6776078 913..1026 100 -> Plus
2L 6776139..6777426 1027..2314 100 -> Plus
2L 6777500..6777594 2315..2409 100 -> Plus
2L 6777657..6777734 2410..2487 100 -> Plus
2L 6777796..6778444 2488..3136 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:23:19 Download gff for RH29724.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6774039..6774887 1..848 99 -> Plus
2L 6775831..6775894 849..912 100 -> Plus
2L 6775965..6776078 913..1026 100 -> Plus
2L 6776139..6777426 1027..2314 100 -> Plus
2L 6777500..6777594 2315..2409 100 -> Plus
2L 6777657..6777734 2410..2487 100 -> Plus
2L 6777796..6778444 2488..3136 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:23:19 Download gff for RH29724.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6774039..6774887 1..848 99 -> Plus
2L 6775831..6775894 849..912 100 -> Plus
2L 6775965..6776078 913..1026 100 -> Plus
2L 6776139..6777426 1027..2314 100 -> Plus
2L 6777500..6777594 2315..2409 100 -> Plus
2L 6777657..6777734 2410..2487 100 -> Plus
2L 6777796..6778444 2488..3136 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:27:32 Download gff for RH29724.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6775965..6776078 913..1026 100 -> Plus
arm_2L 6774039..6774887 1..848 99 -> Plus
arm_2L 6775831..6775894 849..912 100 -> Plus
arm_2L 6776139..6777426 1027..2314 100 -> Plus
arm_2L 6777500..6777594 2315..2409 100 -> Plus
arm_2L 6777657..6777734 2410..2487 100 -> Plus
arm_2L 6777796..6778444 2488..3136 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:15:15 Download gff for RH29724.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6774039..6774887 1..848 99 -> Plus
2L 6775831..6775894 849..912 100 -> Plus
2L 6775965..6776078 913..1026 100 -> Plus
2L 6776139..6777426 1027..2314 100 -> Plus
2L 6777500..6777594 2315..2409 100 -> Plus
2L 6777657..6777734 2410..2487 100 -> Plus
2L 6777796..6778444 2488..3136 100   Plus

RH29724.pep Sequence

Translation from 653 to 2485

> RH29724.pep
MVDAKPQPPTPGAMPGTGTPPGGFAGERSKIKLFMERTPSIGALKSKFLT
VLGNSNELLNGISNKLTLSSSSSDSDYCDDDEDIPKFDESIDYTKIDFEG
RRVKARRAHEEIISGRYRQPNLAPRPRLEPSRGRHAASKLGAPLRSSSGS
SSSSSSSDDSSSVSLPEHMANRSHDVSSTTRSDSIESRHSGGYERARAIA
GARRSEMDMQKDVQRIGEVGDTVPPHIDVQPPTEAGAGSGGRQQWAGGSN
SMRLPSRSRASNSSTLTSLRDEPDQLLASPSMESTDWRHFIRSESQNSVP
SWASSISLDCRAGEEPVKEFMKHFTALLFGGSPGAVDLELKSEFGVLLRL
EIGRLWFTRFLTEQRHKSKRLDSVTFGSLAQYFALALFECSECEDYGPAA
VLMNLCFLFYHEVEVPGCDPYREYLFSSLRQQPIWQQARFWNAIFHDGMQ
AEREHRGQSQMRRQKRRQQKQQQRQAAAGAGSGAGTADGPPTKSQRKQGG
DSSSSSSHQAAQSGTPAAQACTGSIPANRRPSKTSLTQAHSLRDQEDIAF
RQLGALTCNMHSLGTSQELCLDFLKKNVVAHNLSKDKAKLIRDNIYRMYH
ETQLWGARHA*

RH29724.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:02:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15426-PA 612 GF15426-PA 1..612 1..610 2302 82.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:02:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10433-PA 618 GG10433-PA 1..618 1..610 2694 92.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:02:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10944-PA 614 GH10944-PA 1..612 1..608 1982 74.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:14:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG17378-PA 610 CG17378-PA 1..610 1..610 3171 100 Plus
CG17378-PC 561 CG17378-PC 16..561 65..610 2834 99.8 Plus
CG17378-PB 561 CG17378-PB 16..561 65..610 2834 99.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:02:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13586-PA 602 GI13586-PA 19..601 22..609 2034 74.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:02:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25788-PA 631 GL25788-PA 1..631 1..608 2073 72.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:02:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14490-PA 631 GA14490-PA 1..631 1..608 2072 72.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:02:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16216-PA 606 GM16216-PA 1..606 1..610 3157 97.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:02:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23431-PA 610 GD23431-PA 1..610 1..610 3212 98.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:03:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12229-PA 611 GJ12229-PA 19..610 22..609 1996 75.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:03:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24807-PA 590 GK24807-PA 19..590 24..610 2046 75.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:03:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14121-PA 615 GE14121-PA 1..615 1..610 2624 92.4 Plus

RH29724.hyp Sequence

Translation from 653 to 2485

> RH29724.hyp
MVDAKPQPPTPGAMPGTGTPPGGFAGERSKIKLFMERTPSIGALKSKFLT
VLGNSNELLNGISNKLTLSSSSSDSDYCDDDEDIPKFDESIDYTKIDFEG
RRVKARRAHEEIISGRYRQPNLAPRPRLEPSRGRHAASKLGAPLRSSSGS
SSSSSSSDDSSSVSLPEHMANRSHDVSSTTRSDSIESRHSGGYERARAIA
GARRSEMDMQKDVQRIGEVGDTVPPHIDVQPPTEAGAGSGGRQQWAGGSN
SMRLPSRSRASNSSTLTSLRDEPDQLLASPSMESTDWRHFIRSESQNSVP
SWASSISLDCRAGEEPVKEFMKHFTALLFGGSPGAVDLELKSEFGVLLRL
EIGRLWFTRFLTEQRHKSKRLDSVTFGSLAQYFALALFECSECEDYGPAA
VLMNLCFLFYHEVEVPGCDPYREYLFSSLRQQPIWQQARFWNAIFHDGMQ
AEREHRGQSQMRRQKRRQQKQQQRQAAAGAGSGAGTADGPPTKSQRKQGG
DSSSSSSHQAAQSGTPAAQACTGSIPANRRPSKTSLTQAHSLRDQEDIAF
RQLGALTCNMHSLGTSQELCLDFLKKNVVAHNLSKDKAKLIRDNIYRMYH
ETQLWGARHA*

RH29724.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:19:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG17378-PA 610 CG17378-PA 1..610 1..610 3171 100 Plus
CG17378-PC 561 CG17378-PC 16..561 65..610 2834 99.8 Plus
CG17378-PB 561 CG17378-PB 16..561 65..610 2834 99.8 Plus