BDGP Sequence Production Resources |
Search the DGRC for RH29859
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 298 |
Well: | 59 |
Vector: | pFlc-1 |
Associated Gene/Transcript | MED18-RC |
Protein status: | RH29859.pep: gold |
Preliminary Size: | 746 |
Sequenced Size: | 895 |
Gene | Date | Evidence |
---|---|---|
CG14802 | 2002-01-01 | Sim4 clustering to Release 2 |
CG14802 | 2002-05-18 | Blastp of sequenced clone |
CG14802 | 2003-01-01 | Sim4 clustering to Release 3 |
MED18 | 2008-04-29 | Release 5.5 accounting |
MED18 | 2008-08-15 | Release 5.9 accounting |
MED18 | 2008-12-18 | 5.12 accounting |
895 bp (895 high quality bases) assembled on 2002-05-18
GenBank Submission: AY119167.1
> RH29859.complete GACTAGTAAAACGAATTCTTCCAAGGAAATGAAACTAAAAACAAAACCAA ACTACTGCTCAGTTAATTTAATACCATAGTACACCCAAACTTACAAAATT AGCCAATGGCGATTGTGTCGTCGGCCCGTGAGTCGCTCTCCCATGCGATG AACAACCGCTTCTTGCCCAACCTGGAGTACTTGCTGCAGGGATCTATCCT GGATTCCGCCGTGGAACACTTGATGCACAGTCTAACCGCCTACCCACTAT CAGACTAAAGGGACTCTGCGACAATGTGGACACCTCGCCGGAGCCGTTTC ACGATCTGGAAGTGTGTATGAGCCTTCGCCAGCCCAATGCCAACCAGCCG CTGCTTCTTCGCGTGCGCCGAGCCCTTGGTCGCGATGCACCCTTTCAGAT GCGCTACCTAGGAAACCCCGAGGTGGATCTGCGCCGGCCTACATTGGTAC GCAGCTGCATGGACTGCGCCTGCACCAATGGCATTTTGGAATTCCTCACG GAAATGGGCTTCCGCCTGGAGTTCGAGTACATAGCAAAGGGCTATATGTT CCGCAAGGGGCGCATGAAGATTACCGTCTCCAAGCTCATTAAGATTGTGC CCGGCAAGCAGCAGGACATGGCCAACGAGCCAATCTCACAAAGCTACATA GTGGAACTCTCTGTGGTGGCGCCAACGGGGCAGGAGAATGTCGGCGAGGA AATGCGCGTGTTTGCCGAGCAACTAAAGCCACTCGTGCAGCTCGAGAAGA TCGACTACAAGCGACTGGGCGGCATGCCGTAGTTTACAATAAAAGTGCAC ATCGCATTTATCCAACAGTTATTTAATTTCTTAAATGTAAGAAAATATAC AAATTTACAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
MED18-RC | 865 | MED18-RC | 2..864 | 2..864 | 4315 | 100 | Plus |
MED18.b | 865 | MED18.b | 2..864 | 2..864 | 4315 | 100 | Plus |
MED18.a | 928 | MED18.a | 603..927 | 540..864 | 1625 | 100 | Plus |
MED18.a | 928 | MED18.a | 247..537 | 251..541 | 1455 | 100 | Plus |
MED18.a | 928 | MED18.a | 21..254 | 2..235 | 1155 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 1760405..1760725 | 540..860 | 1605 | 100 | Plus |
chrX | 22417052 | chrX | 1760025..1760339 | 227..541 | 1575 | 100 | Plus |
chrX | 22417052 | chrX | 1759753..1759981 | 2..230 | 1145 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
McClintock | 6450 | McClintock McCLINTOCK 6450bp | 311..394 | 14..97 | 123 | 60.7 | Plus |
McClintock | 6450 | McClintock McCLINTOCK 6450bp | 6263..6346 | 14..97 | 123 | 60.7 | Plus |
412 | 7567 | 412 412 7567bp | 2351..2412 | 360..299 | 112 | 64.5 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 1759752..1759981 | 1..230 | 99 | -> | Plus |
chrX | 1760029..1760338 | 231..540 | 100 | -> | Plus |
chrX | 1760406..1760725 | 541..860 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED18-RA | 1..122 | 106..227 | 100 | == | Plus |
MED18-RA | 123..654 | 251..782 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED18-RA | 1..122 | 106..227 | 100 | == | Plus |
MED18-RA | 123..654 | 251..782 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED18-RA | 1..122 | 106..227 | 100 | == | Plus |
MED18-RA | 123..654 | 251..782 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED18-RA | 1..122 | 106..227 | 100 | == | Plus |
MED18-RA | 123..654 | 251..782 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED18-RA | 1..122 | 106..227 | 100 | == | Plus |
MED18-RA | 123..654 | 251..782 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED18-RC | 2..860 | 2..860 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED18-RC | 2..860 | 2..860 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED18-RC | 2..860 | 2..860 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED18-RC | 2..860 | 2..860 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED18-RC | 2..860 | 2..860 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 1865909..1866138 | 1..230 | 99 | -> | Plus |
X | 1866186..1866495 | 231..540 | 100 | -> | Plus |
X | 1866563..1866882 | 541..860 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 1865909..1866138 | 1..230 | 99 | -> | Plus |
X | 1866186..1866495 | 231..540 | 100 | -> | Plus |
X | 1866563..1866882 | 541..860 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 1865909..1866138 | 1..230 | 99 | -> | Plus |
X | 1866186..1866495 | 231..540 | 100 | -> | Plus |
X | 1866563..1866882 | 541..860 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 1759942..1760171 | 1..230 | 99 | -> | Plus |
arm_X | 1760219..1760528 | 231..540 | 100 | -> | Plus |
arm_X | 1760596..1760915 | 541..860 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 1874007..1874236 | 1..230 | 99 | -> | Plus |
X | 1874284..1874593 | 231..540 | 100 | -> | Plus |
X | 1874661..1874980 | 541..860 | 100 | Plus |
Translation from 105 to 257
> RH29859.pep MAIVSSARESLSHAMNNRFLPNLEYLLQGSILDSAVEHLMHSLTAYPLSD *
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21201-PA | 217 | GF21201-PA | 1..45 | 1..45 | 184 | 75.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12884-PA | 217 | GG12884-PA | 1..45 | 1..45 | 214 | 93.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24653-PA | 216 | GH24653-PA | 3..44 | 4..45 | 182 | 83.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
MED18-PC | 50 | CG14802-PC | 1..50 | 1..50 | 248 | 100 | Plus |
MED18-PA | 217 | CG14802-PA | 1..43 | 1..43 | 206 | 97.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11081-PA | 217 | GI11081-PA | 3..44 | 4..45 | 165 | 76.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20340-PA | 217 | GL20340-PA | 1..45 | 1..45 | 202 | 88.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13258-PA | 217 | GA13258-PA | 1..45 | 1..45 | 199 | 86.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM19171-PA | 217 | GM19171-PA | 1..45 | 1..45 | 214 | 93.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16392-PA | 216 | GJ16392-PA | 3..44 | 4..45 | 175 | 78.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK10069-PA | 219 | GK10069-PA | 3..47 | 1..45 | 192 | 84.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16712-PA | 217 | GE16712-PA | 1..45 | 1..45 | 214 | 93.3 | Plus |
Translation from 317 to 781
> RH29859.hyp MSLRQPNANQPLLLRVRRALGRDAPFQMRYLGNPEVDLRRPTLVRSCMDC ACTNGILEFLTEMGFRLEFEYIAKGYMFRKGRMKITVSKLIKIVPGKQQD MANEPISQSYIVELSVVAPTGQENVGEEMRVFAEQLKPLVQLEKIDYKRL GGMP*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
MED18-PA | 217 | CG14802-PA | 64..217 | 1..154 | 790 | 100 | Plus |