BDGP Sequence Production Resources |
Search the DGRC for RH30329
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 303 |
Well: | 29 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Fer1-RA |
Protein status: | RH30329.pep: gold |
Preliminary Size: | 531 |
Sequenced Size: | 1451 |
Gene | Date | Evidence |
---|---|---|
CG10066 | 2002-01-01 | Sim4 clustering to Release 2 |
CG33323 | 2002-02-27 | Blastp of sequenced clone |
Fer1 | 2008-04-29 | Release 5.5 accounting |
Fer1 | 2008-08-15 | Release 5.9 accounting |
Fer1 | 2008-12-18 | 5.12 accounting |
1451 bp assembled on 2007-04-17
GenBank Submission: AY089664
> RH30329.complete GATTCGCTTCCCGGCAGTCAGAGAGTTCGCAACACGGCGCGTTTCGATGT TAGAGTGCGCGGCATCGTTGCATCTATAAAGATTACTGGGGTGTTGGCCA CTGGGAAATAACTATATTATAATTGGTTCGCGAGTGCGGAGTGTTTACTG CTTAGGTGATGTGCAATTCGAAAGGTTACTGTGGTGAACCATTTCGTAGA GGTTGAGAAAGCATCGGAATTATTTTGAACCAAGTCTAGTCAGAGGATTA TAGCAAACTCCTAGAAAGGCAAAAGTCAAGGACGAAGAACACACGTTTCA CTTGTTCAGCCTGCTACACCCCCTCCAGAATCTCAAACCTTGTGACACGT GCTGGTCACGCGTCGCCAATCAGCGGATCGGAAGTGTTAGCTTTACCGTT ATGCACTTAACTGGCAATTAGGCACACAAACAGAAGCGCAACAGATTTAC CATGTTTTCCATGGACAATTTCGACTTGGAGGCCACGATGGCGCGCCACT TCTTCGAGGGATCGCAGGCCACCAACGCCTCCACCTCCAGCTCCGACTAT TTTTTTGGGGACGAGCACAGCTCGGAGAGCGATGACGAGGACGATGCCTA TAGCAGTGGCTTCAACAGCGACCAGGAGAACACCGAGAAGACCCGGCGGA GCCACAAGCCCCGGCGCTTGAAGTGCGCCTCCCAAATGGCCCAGCAGCGG CAGGCGGCCAATCTCCGCGAGCGCCGCCGGATGCAGAGCATCAACGAGGC GTTCGAGGGTCTGCGCACCCACATTCCCACGCTGCCCTACGAGAAGCGAC TAAGCAAGGTGGACACACTCAAGCTGGCCATAAGCTACATAACCTTCCTC AGCGAGATGGTCAAGAAGGACAAGAACGGCAACGAGCCGGGCCTAAGTCT GCAGCGTAACTACCAAAAGGAGCCGCCCAAGAAAATTATCCTCAAGGATC GCACTGGCGGCGTGGCGCACTCGTTGTCCTGGTACCGCAAGGGTGACCGA TATCCGGGCAGTAAGCTCTACGCCAGGACCTGGACACCGGAGGATCCACG GGGACCCCACTCGCAGCCCCTGCCGCTGTACAACAACAGCAACTCGAATC AGAATCAAAACAGCAACCAGAGCAGCGACGATTTCAGCGGAAGTGGTGCG GATATGTCGGATCCTGGAGCTGCGGCCAGTATTTTCAGCAGCGGCAGTGG CATGTGAGTCTCGCAGGACTCGCTGGCGTGGCAAAGTCCTGAAACGAGTC ACTGAGAATGAGATTCATTGGAAATCCTACTAGTCAAGCCTTGCTAGTCC TGGCATCTAACACATATTAACCAACTTAATAATTATATGAAGAAAACATG TTCTGTGGTATTTAATTGCTCTAAGTTCGCTAATATCTAAATGTTATACA TAGTGGTTTAGTTTAAATCGAATAAACATTTCACACAAAAAAAAAAAAAA A
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 2967549..2968031 | 954..1436 | 2415 | 100 | Plus |
chr3R | 27901430 | chr3R | 2963036..2963415 | 263..642 | 1885 | 99.7 | Plus |
chr3R | 27901430 | chr3R | 2962267..2962529 | 2..264 | 1300 | 99.6 | Plus |
chr3R | 27901430 | chr3R | 2963480..2963647 | 643..810 | 840 | 100 | Plus |
chr3R | 27901430 | chr3R | 2963907..2964053 | 807..953 | 735 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 7141490..7141975 | 954..1439 | 2430 | 100 | Plus |
3R | 32079331 | 3R | 7136977..7137356 | 263..642 | 1900 | 100 | Plus |
3R | 32079331 | 3R | 7136208..7136470 | 2..264 | 1300 | 99.6 | Plus |
3R | 32079331 | 3R | 7137421..7137588 | 643..810 | 840 | 100 | Plus |
3R | 32079331 | 3R | 7137848..7137994 | 807..953 | 735 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 6882321..6882806 | 954..1439 | 2430 | 100 | Plus |
3R | 31820162 | 3R | 6877808..6878187 | 263..642 | 1900 | 100 | Plus |
3R | 31820162 | 3R | 6877039..6877301 | 2..264 | 1300 | 99.6 | Plus |
3R | 31820162 | 3R | 6878252..6878419 | 643..810 | 840 | 100 | Plus |
3R | 31820162 | 3R | 6878679..6878825 | 807..953 | 735 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 2962265..2962529 | 1..264 | 99 | -> | Plus |
chr3R | 2963038..2963415 | 265..642 | 99 | -> | Plus |
chr3R | 2963480..2963645 | 643..808 | 100 | -> | Plus |
chr3R | 2963909..2964053 | 809..953 | 100 | -> | Plus |
chr3R | 2967549..2968031 | 954..1436 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fer1-RA | 1..756 | 452..1207 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fer1-RA | 1..756 | 452..1207 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fer1-RA | 1..756 | 452..1207 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fer1-RA | 1..756 | 452..1207 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fer1-RA | 1..756 | 452..1207 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fer1-RA | 1..1437 | 1..1436 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fer1-RA | 1..1435 | 2..1436 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fer1-RA | 1..1437 | 1..1436 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fer1-RA | 1..1437 | 1..1436 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fer1-RA | 1..1437 | 1..1436 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 7136206..7136470 | 1..264 | 99 | -> | Plus |
3R | 7136979..7137356 | 265..642 | 100 | -> | Plus |
3R | 7137421..7137586 | 643..808 | 100 | -> | Plus |
3R | 7137850..7137994 | 809..953 | 100 | -> | Plus |
3R | 7141490..7141972 | 954..1436 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 7136206..7136470 | 1..264 | 99 | -> | Plus |
3R | 7136979..7137356 | 265..642 | 100 | -> | Plus |
3R | 7137421..7137586 | 643..808 | 100 | -> | Plus |
3R | 7137850..7137994 | 809..953 | 100 | -> | Plus |
3R | 7141490..7141972 | 954..1436 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 7136206..7136470 | 1..264 | 99 | -> | Plus |
3R | 7136979..7137356 | 265..642 | 100 | -> | Plus |
3R | 7137421..7137586 | 643..808 | 100 | -> | Plus |
3R | 7137850..7137994 | 809..953 | 100 | -> | Plus |
3R | 7141490..7141972 | 954..1436 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 2961928..2962192 | 1..264 | 99 | -> | Plus |
arm_3R | 2963143..2963308 | 643..808 | 100 | -> | Plus |
arm_3R | 2963572..2963716 | 809..953 | 100 | -> | Plus |
arm_3R | 2962701..2963078 | 265..642 | 100 | -> | Plus |
arm_3R | 2967212..2967694 | 954..1436 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 6878681..6878825 | 809..953 | 100 | -> | Plus |
3R | 6877037..6877301 | 1..264 | 99 | -> | Plus |
3R | 6877810..6878187 | 265..642 | 100 | -> | Plus |
3R | 6878252..6878417 | 643..808 | 100 | -> | Plus |
3R | 6882321..6882803 | 954..1436 | 100 | Plus |
Translation from 451 to 1206
> RH30329.pep MFSMDNFDLEATMARHFFEGSQATNASTSSSDYFFGDEHSSESDDEDDAY SSGFNSDQENTEKTRRSHKPRRLKCASQMAQQRQAANLRERRRMQSINEA FEGLRTHIPTLPYEKRLSKVDTLKLAISYITFLSEMVKKDKNGNEPGLSL QRNYQKEPPKKIILKDRTGGVAHSLSWYRKGDRYPGSKLYARTWTPEDPR GPHSQPLPLYNNSNSNQNQNSNQSSDDFSGSGADMSDPGAAASIFSSGSG M*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17655-PA | 251 | GF17655-PA | 1..251 | 1..251 | 1181 | 95.6 | Plus |
Dana\GF18852-PA | 278 | GF18852-PA | 141..211 | 76..140 | 220 | 59.2 | Plus |
Dana\GF16621-PA | 195 | GF16621-PA | 70..143 | 55..137 | 199 | 51.8 | Plus |
Dana\GF13559-PA | 486 | GF13559-PA | 355..413 | 78..137 | 162 | 55 | Plus |
Dana\GF14839-PA | 199 | GF14839-PA | 137..198 | 79..140 | 152 | 46.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13863-PA | 251 | GG13863-PA | 1..251 | 1..251 | 1345 | 100 | Plus |
Dere\GG20146-PA | 279 | GG20146-PA | 142..212 | 76..140 | 220 | 59.2 | Plus |
Dere\GG17199-PA | 195 | GG17199-PA | 87..142 | 82..137 | 197 | 60.7 | Plus |
Dere\twi-PA | 489 | GG22820-PA | 358..416 | 78..137 | 163 | 55 | Plus |
Dere\GG23955-PA | 174 | GG23955-PA | 54..119 | 77..142 | 162 | 47 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19006-PA | 262 | GH19006-PA | 1..262 | 1..251 | 1094 | 85.6 | Plus |
Dgri\GH18836-PA | 283 | GH18836-PA | 146..213 | 76..137 | 206 | 58.8 | Plus |
Dgri\GH19315-PA | 197 | GH19315-PA | 85..140 | 82..137 | 197 | 60.7 | Plus |
Dgri\GH13020-PA | 175 | GH13020-PA | 62..122 | 81..141 | 163 | 50.8 | Plus |
Dgri\GH20971-PA | 526 | GH20971-PA | 388..446 | 78..137 | 162 | 55 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Fer1-PA | 251 | CG33323-PA | 1..251 | 1..251 | 1316 | 100 | Plus |
Fer1-PB | 256 | CG33323-PB | 1..256 | 1..251 | 1300 | 98 | Plus |
Fer2-PE | 273 | CG5952-PE | 142..207 | 76..140 | 211 | 63.6 | Plus |
Fer2-PB | 274 | CG5952-PB | 142..207 | 76..140 | 211 | 63.6 | Plus |
Fer2-PC | 279 | CG5952-PC | 142..212 | 76..140 | 206 | 59.2 | Plus |
Fer2-PD | 283 | CG5952-PD | 142..216 | 76..140 | 202 | 56 | Plus |
Fer3-PA | 195 | CG6913-PA | 69..169 | 55..159 | 198 | 41.8 | Plus |
twi-PC | 490 | CG2956-PC | 290..465 | 3..185 | 176 | 33.7 | Plus |
twi-PB | 490 | CG2956-PB | 290..465 | 3..185 | 176 | 33.7 | Plus |
twi-PA | 490 | CG2956-PA | 290..465 | 3..185 | 176 | 33.7 | Plus |
CG33557-PA | 150 | CG33557-PA | 2..134 | 23..157 | 153 | 30.9 | Plus |
ato-PA | 312 | CG7508-PA | 175..312 | 19..138 | 153 | 34.1 | Plus |
Hand-PA | 174 | CG18144-PA | 54..117 | 77..140 | 152 | 48.4 | Plus |
amos-PA | 198 | CG10393-PA | 136..197 | 79..140 | 148 | 46.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23061-PA | 278 | GI23061-PA | 1..215 | 1..213 | 985 | 92.1 | Plus |
Dmoj\GI10095-PA | 281 | GI10095-PA | 144..214 | 76..140 | 213 | 57.7 | Plus |
Dmoj\GI23534-PA | 187 | GI23534-PA | 78..133 | 82..137 | 197 | 60.7 | Plus |
Dmoj\GI23536-PA | 199 | GI23536-PA | 88..143 | 82..137 | 197 | 60.7 | Plus |
Dmoj\GI18263-PA | 170 | GI18263-PA | 55..119 | 78..142 | 163 | 47.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12422-PA | 253 | GL12422-PA | 1..253 | 1..251 | 1185 | 94.1 | Plus |
Dper\GL12402-PA | 284 | GL12402-PA | 147..217 | 76..140 | 220 | 59.2 | Plus |
Dper\GL12254-PA | 190 | GL12254-PA | 63..129 | 62..137 | 197 | 52.6 | Plus |
Dper\GL18976-PA | 173 | GL18976-PA | 57..124 | 81..150 | 164 | 50 | Plus |
Dper\GL11229-PA | 510 | GL11229-PA | 375..433 | 78..137 | 162 | 55 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA27498-PA | 253 | GA27498-PA | 1..253 | 1..251 | 1185 | 94.1 | Plus |
Dpse\GA19254-PA | 284 | GA19254-PA | 147..217 | 76..140 | 220 | 59.2 | Plus |
Dpse\GA19952-PA | 205 | GA19952-PA | 89..144 | 82..137 | 196 | 60.7 | Plus |
Dpse\GA14815-PA | 173 | GA14815-PA | 57..124 | 81..150 | 164 | 50 | Plus |
Dpse\twi-PA | 510 | GA15541-PA | 375..433 | 78..137 | 162 | 55 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10936-PA | 247 | GM10936-PA | 1..247 | 1..251 | 1293 | 97.2 | Plus |
Dsec\GM25729-PA | 279 | GM25729-PA | 142..212 | 76..140 | 220 | 59.2 | Plus |
Dsec\GM26078-PA | 245 | GM26078-PA | 137..192 | 82..137 | 197 | 60.7 | Plus |
Dsec\GM11834-PA | 171 | GM11834-PA | 51..116 | 77..142 | 163 | 47 | Plus |
Dsec\GM15978-PA | 488 | GM15978-PA | 357..415 | 78..137 | 162 | 55 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19915-PA | 251 | GD19915-PA | 1..251 | 1..251 | 1345 | 100 | Plus |
Dsim\GD20306-PA | 279 | GD20306-PA | 142..212 | 76..140 | 220 | 59.2 | Plus |
Dsim\GD20641-PA | 195 | GD20641-PA | 87..142 | 82..137 | 197 | 60.7 | Plus |
Dsim\GD22284-PA | 174 | GD22284-PA | 54..119 | 77..142 | 163 | 47 | Plus |
Dsim\twi-PA | 476 | GD11731-PA | 345..403 | 78..137 | 162 | 55 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24574-PA | 261 | GJ24574-PA | 1..261 | 1..251 | 1102 | 85.8 | Plus |
Dvir\GJ23831-PA | 278 | GJ23831-PA | 147..211 | 82..140 | 210 | 60 | Plus |
Dvir\GJ10284-PA | 198 | GJ10284-PA | 87..142 | 82..137 | 197 | 60.7 | Plus |
Dvir\twi-PA | 522 | GJ21576-PA | 390..448 | 78..137 | 163 | 55 | Plus |
Dvir\GJ17522-PA | 133 | GJ17522-PA | 21..77 | 81..137 | 154 | 52.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14521-PA | 247 | GK14521-PA | 1..231 | 1..231 | 1007 | 92.7 | Plus |
Dwil\GK14012-PA | 285 | GK14012-PA | 148..218 | 76..140 | 207 | 56.3 | Plus |
Dwil\GK11993-PA | 198 | GK11993-PA | 87..142 | 82..137 | 197 | 60.7 | Plus |
Dwil\GK19547-PA | 515 | GK19547-PA | 379..437 | 78..137 | 162 | 55 | Plus |
Dwil\GK24655-PA | 198 | GK24655-PA | 136..197 | 79..140 | 153 | 46.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24907-PA | 251 | GE24907-PA | 1..251 | 1..251 | 1339 | 99.2 | Plus |
Dyak\GE26333-PA | 279 | GE26333-PA | 142..212 | 76..140 | 220 | 59.2 | Plus |
Dyak\GE10092-PA | 226 | GE10092-PA | 118..173 | 82..137 | 197 | 60.7 | Plus |
Dyak\GE26185-PA | 174 | GE26185-PA | 54..119 | 77..142 | 163 | 47 | Plus |
Dyak\twi-PA | 491 | GE14255-PA | 360..418 | 78..137 | 162 | 55 | Plus |
Translation from 451 to 1206
> RH30329.hyp MFSMDNFDLEATMARHFFEGSQATNASTSSSDYFFGDEHSSESDDEDDAY SSGFNSDQENTEKTRRSHKPRRLKCASQMAQQRQAANLRERRRMQSINEA FEGLRTHIPTLPYEKRLSKVDTLKLAISYITFLSEMVKKDKNGNEPGLSL QRNYQKEPPKKIILKDRTGGVAHSLSWYRKGDRYPGSKLYARTWTPEDPR GPHSQPLPLYNNSNSNQNQNSNQSSDDFSGSGADMSDPGAAASIFSSGSG M*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Fer1-PA | 251 | CG33323-PA | 1..251 | 1..251 | 1316 | 100 | Plus |
Fer1-PB | 256 | CG33323-PB | 1..256 | 1..251 | 1300 | 98 | Plus |
Fer2-PE | 273 | CG5952-PE | 142..207 | 76..140 | 211 | 63.6 | Plus |
Fer2-PB | 274 | CG5952-PB | 142..207 | 76..140 | 211 | 63.6 | Plus |
Fer2-PC | 279 | CG5952-PC | 142..212 | 76..140 | 206 | 59.2 | Plus |