Clone RH31085 Report

Search the DGRC for RH31085

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:310
Well:85
Vector:pFlc-1
Associated Gene/Transcriptcpx-RJ
Protein status:RH31085.pep: gold
Sequenced Size:3216

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32490 2002-11-20 Blastp of sequenced clone
cpx 2008-04-29 Release 5.5 accounting
cpx 2008-08-15 Release 5.9 accounting
cpx 2008-12-18 5.12 accounting

Clone Sequence Records

RH31085.complete Sequence

3216 bp (3216 high quality bases) assembled on 2002-11-20

GenBank Submission: BT003456

> RH31085.complete
ACCAGACTCGGAATGATAACACGCTAGGCGATAACGAGCCAAGCTGAAAG
GCGCGCTGTAGGAGGTGATGGAGGCGATGATGGCGACGACAAGGAAAAGG
CAGAGGAGGAGGAGAGGGAGCGTCAGGAGGCCATCAAGGAGGCCGAGGAC
CGCCGAAAGGAAAAGCACCGGAAAATGGAGGAGGAGCGCGAGAAGATGAG
GCAAGACATTCGCGATAAGTACAACATCAAGAAGAAGGAGGAGATCGTGG
AGGCGGCCCCCCAAGAAGAGCCCAATCCCCTGATGCGGAAAAAGAAGACG
CCCGAGGAACTCGCCGCCGAAGCGGAGCAGGAAGAGCTCGACGATTTTAC
AAAACTGAAAAATCAAATAGAAACGCAAGTAAATGAGCTAAAAACTCAAA
TAGAGGGAAAATGTGTCATGCAGTGATATGTCAGTCACCATAATAACAGA
TAAATAAATATGATGATAAAACACGTGTAATACTGATAACATAGCCCATA
AACGGAAATTAATTTAACTCAACTTAATATTGAATTTGTTAATATGAGAT
CAGTTCATTTACATGGGAACCATAAATGAATTAAAACTACTGCGAATCTA
GAGCGTAATATAACTTTACCCGGCAGCAGCATAACGCCTTTTAAACACTA
AATCTCAAAATCGACGACAGCTATAATTCGAAATGCATAATCAAAATCCG
AACGAGGCGGTGAACTTTATGAATTTTAAAGTAGCTAAATCGCGTACCAA
ATCATTTAAATCCCAACTATAGTGAAAGCCTTTAATAATATTCAAATCAC
TTTGCTACGATAATAATGTAATATACTCAAACCCAATATACAATACATAA
TCGTTGTTTAGCTGATAACATACAACAAAAAGTAACGAAATAATGAATAT
ATTGAATCGGCACGATGACACTCGAATGCAAATAGAAAAAAGAATAATAA
AATAACATAAAACAAAAATACCAATCCTAAAAAACATTAAGCCAATGGTG
CGACAGAGGAGGCTACCGAGTTTGTCGAGCCGTCGAAGTACATACATATG
TTGCTGAAATCACACTGGACTTGAAATCCATCTATAAGTATAGATATACA
TATTATAAAATAAATCGGCGAACATGTTAGAATGGTCATTCAAATACACC
CGTTGTGTATATATGTAAATTTCAAGAATTTTACTAGGAGTATTAATACT
TGCAAACGAATTGACTGCAGGATACGTTAAAATGGCTGATTCTCTAAATT
GTTTTTCATAACCAAGAAAAAATGGTTACAAATATATGAAAAAAGATTCA
GTCAATTTGTTTTTCAACGTTTGACTCAAACATCTTTAACAGCTGTTACA
TTTTGTTTTTTTCTTATACAAACATCATACCTACACAACAATTGAGAATT
TCGAACTCTTTGAGACAGTTAATGATCTCTCTGATTGATGCTTCTGAAAT
AACAACATATGCAAAAACACGAAACAACAACAATATCAACTATTACAACA
ACATCAACAACAATTCTACCAATTCTTCACAACTACGTCTTGATGGTCCC
ACTTAGACATGTTCTCTCGGTGTTTTATAAGTTTCATCAACAACAGCCAG
AACAACAGCACAAGAAAACGCCTACAGCCAGTACAAGAACAACATCAACA
ACAACATCAACTACAGAAGAATCCAAATATGTATTATAAGAGATGAACAA
TACTTTCCAAGCAAACAGTAGATGAAAACAACAAGCTGCATGAACAACAG
CATCAACTAAATCAGATCATTGCAATTTGCAGGCCAGCATTCCCTATCTT
ATTTCTGAACATTGTGAATAAACTCGGATGTGGTTTACCAAATATGCCAA
ACCAAACAGGCTCATATATATACCATACATGGTCACTAATCACCAGCAAT
CAAATGGCTATATGGTGTTGCAAATGCTTTAAATAATGTACAGATCCAAT
AAAAAGCAACGAAATATGCATATACATCTGTGCAACATTCATTAGAAGTC
ACTTAATTAAAGAGCTAAATATGACATTCTGTACTCACAATAGAAAGCTA
AACTTCCAAATCCCAAAAGAGAGTTTCAAGATATCAGTTAGAGCTTCGTG
TCACAATGCTTCTTAAAATTCTCAACATCATGTTTTTCATAAGTCGGTGG
GACAGCGATAAAGCAACCAGGCTTAACGCCCTTCTCTGTCAATCTAATAA
AGCAATCCTCTAGTGCCCCTCGCTCCATACAGAGTTAGGAACGATCAAAC
TAATGAATGAATGCCTTAACGTGGCTCAAATGACTAGACCATGAATAGCG
AATAGTTGATGATAAGAAAAGTTGATTCTACCCTAAGAAAGCAATTTGCC
AGCCCTTGCTTTGTTTCCCTATTGTCTGTTACTGAACCTGCACCCAGAAA
TGTATCTTAGCTATGATCCTTTTAAACTCAAAACTAACAGTCTATAAAGA
AACCGCTTTTCAAATACTTATAGAAAATGTTTACCTAGATTCTACTATAT
GAATTGCGTTTTGTCTCAGATATTTATATACGATTGAAGGCCACTTTAAT
TGTTCAATATGGTGAACGAACTAACACATAATTAAAACCAACACAACTTA
TTGAAGCATACTATTCAATCTTAACCAAGTTTTAACGTTATCATAAATGT
TTAAAGTGTTAAATGGTTCAGCCGCTTTCGTTTTCATTTATAATTTGTTA
ATACTATGTTAACGTTTAAAATATAGTATTGAAAAGGTAATCATATGTAT
ATCAGAAAGTTCACGAAACCACAGATTATTAAATATTAATATCTATCTAT
ATATATGTATGTATATATACATGTATATATACATATATGTATATATGTAT
GTATGTATATATGTATATATGTATATATGTATATATGTATATATATATAT
ACATATACATATATACATATGTATATTTATATATATGTGTGAATATGTGT
AACTTAATAGGAAAATGAATTTAATAGAGAAACAACAGACAAAAATTATA
AATAATGTTGAAAAGAATACCATTCAAGTCATTATTAGATGTGAAAGACG
TTCTATACCCAGCAAAACAGAAACAAAAACATAAGAAAATCGTTAATAGT
TGATTAATTATATTGTTACTTTGAACATTTAACTAAAACGAACGAAAAAC
AAAAGATGCTATAATAAAAAAGTATATATGTTTAAATATATATGAGAAAC
ACAAAAAAAAAAAAAA

RH31085.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:32:13
Subject Length Description Subject Range Query Range Score Percent Strand
cpx-RJ 3200 cpx-RJ 4..3200 6..3202 15910 99.8 Plus
cpx-RK 3823 cpx-RK 586..3737 53..3204 15685 99.8 Plus
cpx-RX 3798 cpx-RX 503..3654 53..3204 15685 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:45:31
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 125510..127261 1451..3202 8700 99.8 Plus
chr3R 27901430 chr3R 123200..124305 345..1450 5500 99.8 Plus
chr3R 27901430 chr3R 120840..121006 53..219 835 100 Plus
chr3R 27901430 chr3R 121286..121420 218..352 675 100 Plus
chr3R 27901430 chr3R 120618..120665 6..53 240 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:26:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:45:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4299790..4301543 1451..3204 8710 99.8 Plus
3R 32079331 3R 4297480..4298585 345..1450 5500 99.8 Plus
3R 32079331 3R 4295120..4295286 53..219 835 100 Plus
3R 32079331 3R 4295566..4295700 218..352 675 100 Plus
3R 32079331 3R 4294898..4294945 6..53 240 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:07:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 4040621..4042374 1451..3204 8710 99.7 Plus
3R 31820162 3R 4038311..4039416 345..1450 5500 99.8 Plus
3R 31820162 3R 4035951..4036117 53..219 835 100 Plus
3R 31820162 3R 4036397..4036531 218..352 675 100 Plus
3R 31820162 3R 4035729..4035776 6..53 240 100 Plus
Blast to na_te.dros performed 2019-03-16 23:45:30
Subject Length Description Subject Range Query Range Score Percent Strand
Quasimodo 7387 Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. 6182..6627 2575..3005 173 54.8 Plus
rover 7318 rover ROVER 7318bp 5408..5524 865..986 146 62.3 Plus
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 1090..1214 903..783 146 60.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 8203..8392 2710..2525 128 55.5 Minus
accord2 7650 accord2 QBERT 7650bp 554..688 3192..3064 128 61.3 Minus
412 7567 412 412 7567bp 1722..1847 441..569 124 58.5 Plus

RH31085.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:46:28 Download gff for RH31085.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 120615..120664 1..52 94 -> Plus
chr3R 120840..121006 53..219 100 -> Plus
chr3R 121288..121420 220..352 100 -> Plus
chr3R 123208..124305 353..1450 99 -> Plus
chr3R 125510..125643 1451..1584 69 == Plus
chr3R 125725..126847 1666..2788 99 == Plus
chr3R 126998..127261 2939..3202 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:44:46 Download gff for RH31085.complete
Subject Subject Range Query Range Percent Splice Strand
cpx-RG 52..429 47..426 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:03:22 Download gff for RH31085.complete
Subject Subject Range Query Range Percent Splice Strand
cpx-RI 52..429 47..426 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:23:51 Download gff for RH31085.complete
Subject Subject Range Query Range Percent Splice Strand
cpx-RS 58..441 43..426 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:53:40 Download gff for RH31085.complete
Subject Subject Range Query Range Percent Splice Strand
cpx-RG 52..429 47..426 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:58:16 Download gff for RH31085.complete
Subject Subject Range Query Range Percent Splice Strand
cpx-RS 58..441 43..426 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:21:56 Download gff for RH31085.complete
Subject Subject Range Query Range Percent Splice Strand
cpx-RJ 1..3200 4..3202 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:03:22 Download gff for RH31085.complete
Subject Subject Range Query Range Percent Splice Strand
cpx-RJ 1..3200 4..3202 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:23:51 Download gff for RH31085.complete
Subject Subject Range Query Range Percent Splice Strand
cpx-RJ 1..3200 4..3202 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:53:41 Download gff for RH31085.complete
Subject Subject Range Query Range Percent Splice Strand
cpx-RJ 1..3200 4..3202 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:58:16 Download gff for RH31085.complete
Subject Subject Range Query Range Percent Splice Strand
cpx-RJ 34..3233 1..3202 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:46:28 Download gff for RH31085.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4299790..4301541 1451..3202 99   Plus
3R 4294895..4294944 1..52 94 -> Plus
3R 4295120..4295286 53..219 100 -> Plus
3R 4295568..4295700 220..352 100 -> Plus
3R 4297488..4298585 353..1450 99 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:46:28 Download gff for RH31085.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4299790..4301541 1451..3202 99   Plus
3R 4294895..4294944 1..52 94 -> Plus
3R 4295120..4295286 53..219 100 -> Plus
3R 4295568..4295700 220..352 100 -> Plus
3R 4297488..4298585 353..1450 99 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:46:28 Download gff for RH31085.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4299790..4301541 1451..3202 99   Plus
3R 4294895..4294944 1..52 94 -> Plus
3R 4295120..4295286 53..219 100 -> Plus
3R 4295568..4295700 220..352 100 -> Plus
3R 4297488..4298585 353..1450 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:23:51 Download gff for RH31085.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 120617..120666 1..52 94 -> Plus
arm_3R 120842..121008 53..219 100 -> Plus
arm_3R 121290..121422 220..352 100 -> Plus
arm_3R 123210..124307 353..1450 99 -> Plus
arm_3R 125512..127263 1451..3202 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:25:49 Download gff for RH31085.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4038319..4039416 353..1450 99 -> Plus
3R 4040621..4042372 1451..3202 99   Plus
3R 4036399..4036531 220..352 100 -> Plus
3R 4035726..4035775 1..52 94 -> Plus
3R 4035951..4036117 53..219 100 -> Plus

RH31085.pep Sequence

Translation from 174 to 425

> RH31085.pep
MEEEREKMRQDIRDKYNIKKKEEIVEAAPQEEPNPLMRKKKTPEELAAEA
EQEELDDFTKLKNQIETQVNELKTQIEGKCVMQ*

RH31085.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:07:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18201-PA 142 GF18201-PA 60..142 1..83 414 100 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:07:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12264-PA 142 GG12264-PA 60..142 1..83 414 100 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:07:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19100-PA 142 GH19100-PA 60..142 1..83 408 98.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:28:20
Subject Length Description Subject Range Query Range Score Percent Strand
cpx-PK 83 CG32490-PK 1..83 1..83 421 100 Plus
cpx-PJ 83 CG32490-PJ 1..83 1..83 421 100 Plus
cpx-PAA 125 CG32490-PAA 43..125 1..83 421 100 Plus
cpx-PL 128 CG32490-PL 46..128 1..83 421 100 Plus
cpx-PW 139 CG32490-PW 57..139 1..83 421 100 Plus
cpx-PP 139 CG32490-PP 57..139 1..83 421 100 Plus
cpx-PO 139 CG32490-PO 57..139 1..83 421 100 Plus
cpx-PM 139 CG32490-PM 57..139 1..83 421 100 Plus
cpx-PC 139 CG32490-PC 57..139 1..83 421 100 Plus
cpx-PX 142 CG32490-PX 60..142 1..83 421 100 Plus
cpx-PV 142 CG32490-PV 60..142 1..83 421 100 Plus
cpx-PH 142 CG32490-PH 60..142 1..83 421 100 Plus
cpx-PG 142 CG32490-PG 60..142 1..83 421 100 Plus
cpx-PA 142 CG32490-PA 60..142 1..83 421 100 Plus
cpx-PI 142 CG32490-PI 60..142 1..83 421 100 Plus
cpx-PY 143 CG32490-PY 61..143 1..83 421 100 Plus
cpx-PU 143 CG32490-PU 61..143 1..83 421 100 Plus
cpx-PS 146 CG32490-PS 64..146 1..83 421 100 Plus
cpx-PE 138 CG32490-PE 60..125 1..65 305 93.9 Plus
cpx-PZ 98 CG32490-PZ 1..59 1..59 300 100 Plus
cpx-PAB 157 CG32490-PAB 60..118 1..59 300 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:07:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10852-PA 142 GI10852-PA 60..142 1..83 414 100 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:07:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12314-PA 123 GL12314-PA 60..101 1..43 129 67.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:07:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16944-PA 142 GA16944-PA 60..142 1..83 414 100 Plus
Dpse\GA16944-PB 83 GA16944-PB 1..83 1..83 408 100 Plus
Dpse\GA16944-PC 138 GA16944-PC 60..125 1..65 230 93.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:07:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10742-PA 142 GM10742-PA 60..142 1..83 414 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:07:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19714-PA 142 GD19714-PA 60..142 1..83 414 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:07:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14459-PA 142 GJ14459-PA 60..142 1..83 408 98.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:07:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10950-PA 142 GK10950-PA 60..142 1..83 414 100 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:07:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25403-PA 142 GE25403-PA 60..142 1..83 409 98.8 Plus

RH31085.hyp Sequence

Translation from 174 to 425

> RH31085.hyp
MEEEREKMRQDIRDKYNIKKKEEIVEAAPQEEPNPLMRKKKTPEELAAEA
EQEELDDFTKLKNQIETQVNELKTQIEGKCVMQ*

RH31085.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:01:27
Subject Length Description Subject Range Query Range Score Percent Strand
cpx-PK 83 CG32490-PK 1..83 1..83 421 100 Plus
cpx-PJ 83 CG32490-PJ 1..83 1..83 421 100 Plus
cpx-PAA 125 CG32490-PAA 43..125 1..83 421 100 Plus
cpx-PL 128 CG32490-PL 46..128 1..83 421 100 Plus
cpx-PW 139 CG32490-PW 57..139 1..83 421 100 Plus