BDGP Sequence Production Resources |
Search the DGRC for RH31085
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 310 |
Well: | 85 |
Vector: | pFlc-1 |
Associated Gene/Transcript | cpx-RJ |
Protein status: | RH31085.pep: gold |
Sequenced Size: | 3216 |
Gene | Date | Evidence |
---|---|---|
CG32490 | 2002-11-20 | Blastp of sequenced clone |
cpx | 2008-04-29 | Release 5.5 accounting |
cpx | 2008-08-15 | Release 5.9 accounting |
cpx | 2008-12-18 | 5.12 accounting |
3216 bp (3216 high quality bases) assembled on 2002-11-20
GenBank Submission: BT003456
> RH31085.complete ACCAGACTCGGAATGATAACACGCTAGGCGATAACGAGCCAAGCTGAAAG GCGCGCTGTAGGAGGTGATGGAGGCGATGATGGCGACGACAAGGAAAAGG CAGAGGAGGAGGAGAGGGAGCGTCAGGAGGCCATCAAGGAGGCCGAGGAC CGCCGAAAGGAAAAGCACCGGAAAATGGAGGAGGAGCGCGAGAAGATGAG GCAAGACATTCGCGATAAGTACAACATCAAGAAGAAGGAGGAGATCGTGG AGGCGGCCCCCCAAGAAGAGCCCAATCCCCTGATGCGGAAAAAGAAGACG CCCGAGGAACTCGCCGCCGAAGCGGAGCAGGAAGAGCTCGACGATTTTAC AAAACTGAAAAATCAAATAGAAACGCAAGTAAATGAGCTAAAAACTCAAA TAGAGGGAAAATGTGTCATGCAGTGATATGTCAGTCACCATAATAACAGA TAAATAAATATGATGATAAAACACGTGTAATACTGATAACATAGCCCATA AACGGAAATTAATTTAACTCAACTTAATATTGAATTTGTTAATATGAGAT CAGTTCATTTACATGGGAACCATAAATGAATTAAAACTACTGCGAATCTA GAGCGTAATATAACTTTACCCGGCAGCAGCATAACGCCTTTTAAACACTA AATCTCAAAATCGACGACAGCTATAATTCGAAATGCATAATCAAAATCCG AACGAGGCGGTGAACTTTATGAATTTTAAAGTAGCTAAATCGCGTACCAA ATCATTTAAATCCCAACTATAGTGAAAGCCTTTAATAATATTCAAATCAC TTTGCTACGATAATAATGTAATATACTCAAACCCAATATACAATACATAA TCGTTGTTTAGCTGATAACATACAACAAAAAGTAACGAAATAATGAATAT ATTGAATCGGCACGATGACACTCGAATGCAAATAGAAAAAAGAATAATAA AATAACATAAAACAAAAATACCAATCCTAAAAAACATTAAGCCAATGGTG CGACAGAGGAGGCTACCGAGTTTGTCGAGCCGTCGAAGTACATACATATG TTGCTGAAATCACACTGGACTTGAAATCCATCTATAAGTATAGATATACA TATTATAAAATAAATCGGCGAACATGTTAGAATGGTCATTCAAATACACC CGTTGTGTATATATGTAAATTTCAAGAATTTTACTAGGAGTATTAATACT TGCAAACGAATTGACTGCAGGATACGTTAAAATGGCTGATTCTCTAAATT GTTTTTCATAACCAAGAAAAAATGGTTACAAATATATGAAAAAAGATTCA GTCAATTTGTTTTTCAACGTTTGACTCAAACATCTTTAACAGCTGTTACA TTTTGTTTTTTTCTTATACAAACATCATACCTACACAACAATTGAGAATT TCGAACTCTTTGAGACAGTTAATGATCTCTCTGATTGATGCTTCTGAAAT AACAACATATGCAAAAACACGAAACAACAACAATATCAACTATTACAACA ACATCAACAACAATTCTACCAATTCTTCACAACTACGTCTTGATGGTCCC ACTTAGACATGTTCTCTCGGTGTTTTATAAGTTTCATCAACAACAGCCAG AACAACAGCACAAGAAAACGCCTACAGCCAGTACAAGAACAACATCAACA ACAACATCAACTACAGAAGAATCCAAATATGTATTATAAGAGATGAACAA TACTTTCCAAGCAAACAGTAGATGAAAACAACAAGCTGCATGAACAACAG CATCAACTAAATCAGATCATTGCAATTTGCAGGCCAGCATTCCCTATCTT ATTTCTGAACATTGTGAATAAACTCGGATGTGGTTTACCAAATATGCCAA ACCAAACAGGCTCATATATATACCATACATGGTCACTAATCACCAGCAAT CAAATGGCTATATGGTGTTGCAAATGCTTTAAATAATGTACAGATCCAAT AAAAAGCAACGAAATATGCATATACATCTGTGCAACATTCATTAGAAGTC ACTTAATTAAAGAGCTAAATATGACATTCTGTACTCACAATAGAAAGCTA AACTTCCAAATCCCAAAAGAGAGTTTCAAGATATCAGTTAGAGCTTCGTG TCACAATGCTTCTTAAAATTCTCAACATCATGTTTTTCATAAGTCGGTGG GACAGCGATAAAGCAACCAGGCTTAACGCCCTTCTCTGTCAATCTAATAA AGCAATCCTCTAGTGCCCCTCGCTCCATACAGAGTTAGGAACGATCAAAC TAATGAATGAATGCCTTAACGTGGCTCAAATGACTAGACCATGAATAGCG AATAGTTGATGATAAGAAAAGTTGATTCTACCCTAAGAAAGCAATTTGCC AGCCCTTGCTTTGTTTCCCTATTGTCTGTTACTGAACCTGCACCCAGAAA TGTATCTTAGCTATGATCCTTTTAAACTCAAAACTAACAGTCTATAAAGA AACCGCTTTTCAAATACTTATAGAAAATGTTTACCTAGATTCTACTATAT GAATTGCGTTTTGTCTCAGATATTTATATACGATTGAAGGCCACTTTAAT TGTTCAATATGGTGAACGAACTAACACATAATTAAAACCAACACAACTTA TTGAAGCATACTATTCAATCTTAACCAAGTTTTAACGTTATCATAAATGT TTAAAGTGTTAAATGGTTCAGCCGCTTTCGTTTTCATTTATAATTTGTTA ATACTATGTTAACGTTTAAAATATAGTATTGAAAAGGTAATCATATGTAT ATCAGAAAGTTCACGAAACCACAGATTATTAAATATTAATATCTATCTAT ATATATGTATGTATATATACATGTATATATACATATATGTATATATGTAT GTATGTATATATGTATATATGTATATATGTATATATGTATATATATATAT ACATATACATATATACATATGTATATTTATATATATGTGTGAATATGTGT AACTTAATAGGAAAATGAATTTAATAGAGAAACAACAGACAAAAATTATA AATAATGTTGAAAAGAATACCATTCAAGTCATTATTAGATGTGAAAGACG TTCTATACCCAGCAAAACAGAAACAAAAACATAAGAAAATCGTTAATAGT TGATTAATTATATTGTTACTTTGAACATTTAACTAAAACGAACGAAAAAC AAAAGATGCTATAATAAAAAAGTATATATGTTTAAATATATATGAGAAAC ACAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 125510..127261 | 1451..3202 | 8700 | 99.8 | Plus |
chr3R | 27901430 | chr3R | 123200..124305 | 345..1450 | 5500 | 99.8 | Plus |
chr3R | 27901430 | chr3R | 120840..121006 | 53..219 | 835 | 100 | Plus |
chr3R | 27901430 | chr3R | 121286..121420 | 218..352 | 675 | 100 | Plus |
chr3R | 27901430 | chr3R | 120618..120665 | 6..53 | 240 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 4299790..4301543 | 1451..3204 | 8710 | 99.8 | Plus |
3R | 32079331 | 3R | 4297480..4298585 | 345..1450 | 5500 | 99.8 | Plus |
3R | 32079331 | 3R | 4295120..4295286 | 53..219 | 835 | 100 | Plus |
3R | 32079331 | 3R | 4295566..4295700 | 218..352 | 675 | 100 | Plus |
3R | 32079331 | 3R | 4294898..4294945 | 6..53 | 240 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 4040621..4042374 | 1451..3204 | 8710 | 99.7 | Plus |
3R | 31820162 | 3R | 4038311..4039416 | 345..1450 | 5500 | 99.8 | Plus |
3R | 31820162 | 3R | 4035951..4036117 | 53..219 | 835 | 100 | Plus |
3R | 31820162 | 3R | 4036397..4036531 | 218..352 | 675 | 100 | Plus |
3R | 31820162 | 3R | 4035729..4035776 | 6..53 | 240 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Quasimodo | 7387 | Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. | 6182..6627 | 2575..3005 | 173 | 54.8 | Plus |
rover | 7318 | rover ROVER 7318bp | 5408..5524 | 865..986 | 146 | 62.3 | Plus |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 1090..1214 | 903..783 | 146 | 60.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 8203..8392 | 2710..2525 | 128 | 55.5 | Minus |
accord2 | 7650 | accord2 QBERT 7650bp | 554..688 | 3192..3064 | 128 | 61.3 | Minus |
412 | 7567 | 412 412 7567bp | 1722..1847 | 441..569 | 124 | 58.5 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 120615..120664 | 1..52 | 94 | -> | Plus |
chr3R | 120840..121006 | 53..219 | 100 | -> | Plus |
chr3R | 121288..121420 | 220..352 | 100 | -> | Plus |
chr3R | 123208..124305 | 353..1450 | 99 | -> | Plus |
chr3R | 125510..125643 | 1451..1584 | 69 | == | Plus |
chr3R | 125725..126847 | 1666..2788 | 99 | == | Plus |
chr3R | 126998..127261 | 2939..3202 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cpx-RG | 52..429 | 47..426 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cpx-RI | 52..429 | 47..426 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cpx-RS | 58..441 | 43..426 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cpx-RG | 52..429 | 47..426 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cpx-RS | 58..441 | 43..426 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cpx-RJ | 1..3200 | 4..3202 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cpx-RJ | 1..3200 | 4..3202 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cpx-RJ | 1..3200 | 4..3202 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cpx-RJ | 1..3200 | 4..3202 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cpx-RJ | 34..3233 | 1..3202 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 4299790..4301541 | 1451..3202 | 99 | Plus | |
3R | 4294895..4294944 | 1..52 | 94 | -> | Plus |
3R | 4295120..4295286 | 53..219 | 100 | -> | Plus |
3R | 4295568..4295700 | 220..352 | 100 | -> | Plus |
3R | 4297488..4298585 | 353..1450 | 99 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 4299790..4301541 | 1451..3202 | 99 | Plus | |
3R | 4294895..4294944 | 1..52 | 94 | -> | Plus |
3R | 4295120..4295286 | 53..219 | 100 | -> | Plus |
3R | 4295568..4295700 | 220..352 | 100 | -> | Plus |
3R | 4297488..4298585 | 353..1450 | 99 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 4299790..4301541 | 1451..3202 | 99 | Plus | |
3R | 4294895..4294944 | 1..52 | 94 | -> | Plus |
3R | 4295120..4295286 | 53..219 | 100 | -> | Plus |
3R | 4295568..4295700 | 220..352 | 100 | -> | Plus |
3R | 4297488..4298585 | 353..1450 | 99 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 120617..120666 | 1..52 | 94 | -> | Plus |
arm_3R | 120842..121008 | 53..219 | 100 | -> | Plus |
arm_3R | 121290..121422 | 220..352 | 100 | -> | Plus |
arm_3R | 123210..124307 | 353..1450 | 99 | -> | Plus |
arm_3R | 125512..127263 | 1451..3202 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 4038319..4039416 | 353..1450 | 99 | -> | Plus |
3R | 4040621..4042372 | 1451..3202 | 99 | Plus | |
3R | 4036399..4036531 | 220..352 | 100 | -> | Plus |
3R | 4035726..4035775 | 1..52 | 94 | -> | Plus |
3R | 4035951..4036117 | 53..219 | 100 | -> | Plus |
Translation from 174 to 425
> RH31085.pep MEEEREKMRQDIRDKYNIKKKEEIVEAAPQEEPNPLMRKKKTPEELAAEA EQEELDDFTKLKNQIETQVNELKTQIEGKCVMQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18201-PA | 142 | GF18201-PA | 60..142 | 1..83 | 414 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12264-PA | 142 | GG12264-PA | 60..142 | 1..83 | 414 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19100-PA | 142 | GH19100-PA | 60..142 | 1..83 | 408 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
cpx-PK | 83 | CG32490-PK | 1..83 | 1..83 | 421 | 100 | Plus |
cpx-PJ | 83 | CG32490-PJ | 1..83 | 1..83 | 421 | 100 | Plus |
cpx-PAA | 125 | CG32490-PAA | 43..125 | 1..83 | 421 | 100 | Plus |
cpx-PL | 128 | CG32490-PL | 46..128 | 1..83 | 421 | 100 | Plus |
cpx-PW | 139 | CG32490-PW | 57..139 | 1..83 | 421 | 100 | Plus |
cpx-PP | 139 | CG32490-PP | 57..139 | 1..83 | 421 | 100 | Plus |
cpx-PO | 139 | CG32490-PO | 57..139 | 1..83 | 421 | 100 | Plus |
cpx-PM | 139 | CG32490-PM | 57..139 | 1..83 | 421 | 100 | Plus |
cpx-PC | 139 | CG32490-PC | 57..139 | 1..83 | 421 | 100 | Plus |
cpx-PX | 142 | CG32490-PX | 60..142 | 1..83 | 421 | 100 | Plus |
cpx-PV | 142 | CG32490-PV | 60..142 | 1..83 | 421 | 100 | Plus |
cpx-PH | 142 | CG32490-PH | 60..142 | 1..83 | 421 | 100 | Plus |
cpx-PG | 142 | CG32490-PG | 60..142 | 1..83 | 421 | 100 | Plus |
cpx-PA | 142 | CG32490-PA | 60..142 | 1..83 | 421 | 100 | Plus |
cpx-PI | 142 | CG32490-PI | 60..142 | 1..83 | 421 | 100 | Plus |
cpx-PY | 143 | CG32490-PY | 61..143 | 1..83 | 421 | 100 | Plus |
cpx-PU | 143 | CG32490-PU | 61..143 | 1..83 | 421 | 100 | Plus |
cpx-PS | 146 | CG32490-PS | 64..146 | 1..83 | 421 | 100 | Plus |
cpx-PE | 138 | CG32490-PE | 60..125 | 1..65 | 305 | 93.9 | Plus |
cpx-PZ | 98 | CG32490-PZ | 1..59 | 1..59 | 300 | 100 | Plus |
cpx-PAB | 157 | CG32490-PAB | 60..118 | 1..59 | 300 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10852-PA | 142 | GI10852-PA | 60..142 | 1..83 | 414 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12314-PA | 123 | GL12314-PA | 60..101 | 1..43 | 129 | 67.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA16944-PA | 142 | GA16944-PA | 60..142 | 1..83 | 414 | 100 | Plus |
Dpse\GA16944-PB | 83 | GA16944-PB | 1..83 | 1..83 | 408 | 100 | Plus |
Dpse\GA16944-PC | 138 | GA16944-PC | 60..125 | 1..65 | 230 | 93.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10742-PA | 142 | GM10742-PA | 60..142 | 1..83 | 414 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19714-PA | 142 | GD19714-PA | 60..142 | 1..83 | 414 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14459-PA | 142 | GJ14459-PA | 60..142 | 1..83 | 408 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK10950-PA | 142 | GK10950-PA | 60..142 | 1..83 | 414 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE25403-PA | 142 | GE25403-PA | 60..142 | 1..83 | 409 | 98.8 | Plus |
Translation from 174 to 425
> RH31085.hyp MEEEREKMRQDIRDKYNIKKKEEIVEAAPQEEPNPLMRKKKTPEELAAEA EQEELDDFTKLKNQIETQVNELKTQIEGKCVMQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
cpx-PK | 83 | CG32490-PK | 1..83 | 1..83 | 421 | 100 | Plus |
cpx-PJ | 83 | CG32490-PJ | 1..83 | 1..83 | 421 | 100 | Plus |
cpx-PAA | 125 | CG32490-PAA | 43..125 | 1..83 | 421 | 100 | Plus |
cpx-PL | 128 | CG32490-PL | 46..128 | 1..83 | 421 | 100 | Plus |
cpx-PW | 139 | CG32490-PW | 57..139 | 1..83 | 421 | 100 | Plus |