Clone RH31156 Report

Search the DGRC for RH31156

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:311
Well:56
Vector:pFlc-1
Associated Gene/TranscriptCG42678-RK
Protein status:RH31156.pep: gold
Sequenced Size:1947

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG30190 2005-01-26 Blastp of sequenced clone
CG30190 2008-04-29 Release 5.5 accounting
CG30190 2008-08-15 Release 5.9 accounting
CG30193 2008-08-15 Release 5.9 accounting
CG30190 2008-12-18 5.12 accounting
CG30193 2008-12-18 5.12 accounting

Clone Sequence Records

RH31156.complete Sequence

1947 bp (1947 high quality bases) assembled on 2005-01-26

GenBank Submission: BT021231

> RH31156.complete
GATTCCGCCACTTCCACTCGGCCATCGCCGTTGTCGCCTTCCCAGCTGCC
CAGTTGTATAGTTGCATAGTTGCACAATTCTAATTCCAATTCCGAATCGC
CTCCTAGGGGAGGCGGCAATCTGGTGCAGACGATCAAGCGGAGCTACAGC
CTCAGCGATCTTAGCGAACCGGATATGCATCGCACGCAGGACGAGCTGGA
CGACGTGATGATGTCCTCGATGACATCGTCGGCGGTGGTCATGCGTTCCA
CAGCCACTGGCGCACGTCTACTGAGGCCAAGAAATCAGACGCCCGTGGGC
AGATCCGGCAGCGGAACACGCCACTCCACGGGCATGTATTTTACGGAGGT
GGATGTGACCGCCAAGAATGCCGGCGATTTCAACTACAACATTCGCAGCC
AGGATGACATCAGCTCTGGCTACTCGAGCGCCGAACCTGTGAGTGGTCTC
AGTCGCACCTCCTCCATGACAAACGCTTCCAAGGCTCGAGCCAAGTCCAA
ACGCAATGAGTTGCTGGAAGAGATGAGAGACGAGGTCTACTTAGACAACC
AGCTGTATTTTCAAGGTGTGCAAAGGAAGAGCTCAGTTCCAGAAGCTGAA
GAACTGAAAATAGTGGAGAGTTCTGAAAGCATCCAATCTCAGGAGTTGGA
AAAGGTGCTGAAGGAGGAGAACATTGATGCAGAAGATGAGGCCTTTTTTG
AAACCTTGCCTTTGATAGAGGAGCACATAAATGAAGTGGTGGCTAACTAT
GGAAGGGATGAAAAGTTGTTGCCCCAAGAGCGGAAGCATAATTCGATAGA
AGAGGAGCAGTTTGAAGATGCATTGTTTGAGGAACCACAGAAATGTGTCT
CAGATGAAGTGGATGCTAAAAATATTGAGGAGATACTAACGGATAGAAGT
CAAAACCAGACTCCGAATGGATCTGCTGAAACTACTGATTCAGGAACACC
TTCCCAAAACAAGCCCTATGTCCATCCACCGATAGACCCATTTTTGCTGG
TTCTAAGCGCTTCTGCATCTGCTCCGGATCCCTTTATGCCCGAACGGCCG
CGTCCAATGTCGCCGCGTGAAATGCGCGAGACTCTGGAGGAGATTAAGCA
CAGTTTCCGTGCCCAACTGGAAGCAGAGCCCTCCGTATCAGCCTCACCAT
CACCCTCCTTGCGGCCCAAGGCCAACCATGGCAAGGGACGAGCTCCACCA
CCGCCCTTGCCACCCAAGAAGCACTCATTGAGTCCCCAACCGGACGCCAT
CAGCCAGACATCGACGGGCAGCGTGGAACGCAAGTCAGGTATCGGACAAC
TGTTCAAGAATATCAAAGCTAATGTGCTGCGTAACAAAGCTAATCCCAGC
CAGCAGCAGCCCGAGGATGAGCAGCTGGCGGCCAAAGAGACACAGATTTG
AAGACAAATCCATGTCTGCTAGCTGCACCACCTTGCCCCGCTCGAGCAGC
CGGAAATCGGAGAGATCCCAGGGTGGAACTGCCACTGGCCAGATGAAAAC
GCGCAACAAGTCGGAGAAGTAGTGGAGCATCGGTTTAAGGCTGCCCATCT
TTGTCAGTATGTTGATTTAGATGGTGACGGTGGGCAGACAGTGGAATCCA
TAGAACCAGAACCTCATGTTTTAGTTTAAATTGTAACTTTATACGGATAT
CGATACAGATTATGATAATATTAGCTATATATGCGCATGCACTGTGTACT
TTGTTTGTGATTCTATTAGAGCTCCGGGCGCAGTTCGTCCTGGTTGCCAC
TGGTACTCACTTCGTGACTAGTTTAGCGTTAAGCGAGTCTCCTAGCCTCT
AACCAAAGGTTCTGCAACAGATGTACTAACCAAAAATGAAACCCGAAGAA
ACCTATCAATTGTGTAGCATAAATTCCTAATATTGTAATTGAACATTAAA
TAAAAGAATCTATACCATTGATCCATTGAACTAAAAAAAAAAAAAAA

RH31156.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:50:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG30190-RA 1933 CG30190-RA 3..1933 2..1932 9625 99.8 Plus
CG30190-RC 2549 CG30190-RC 2018..2549 1399..1930 2615 99.4 Plus
CG30190-RB 972 CG30190-RB 441..972 1399..1930 2615 99.4 Plus
CG30190-RC 2549 CG30190-RC 1619..2021 108..510 2015 100 Plus
CG30190-RB 972 CG30190-RB 42..444 108..510 2015 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:45:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 18816908..18817802 509..1403 4460 99.9 Plus
chr2R 21145070 chr2R 18818036..18818565 1403..1932 2590 99.2 Plus
chr2R 21145070 chr2R 18816319..18816594 108..383 1380 100 Plus
chr2R 21145070 chr2R 18816707..18816840 377..510 655 99.3 Plus
chr2R 21145070 chr2R 18815255..18815366 2..113 545 99.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:26:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:45:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22930387..22931281 509..1403 4475 100 Plus
2R 25286936 2R 22931515..22932044 1403..1932 2620 99.6 Plus
2R 25286936 2R 22929798..22930073 108..383 1380 100 Plus
2R 25286936 2R 22930186..22930319 377..510 655 99.3 Plus
2R 25286936 2R 22928734..22928845 2..113 545 99.1 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:10:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 22931586..22932480 509..1403 4475 100 Plus
2R 25260384 2R 22932714..22933243 1403..1932 2620 99.6 Plus
2R 25260384 2R 22930997..22931272 108..383 1380 100 Plus
2R 25260384 2R 22931385..22931518 377..510 655 99.2 Plus
2R 25260384 2R 22929933..22930044 2..113 545 99.1 Plus
Blast to na_te.dros performed on 2019-03-16 23:45:38 has no hits.

RH31156.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:46:30 Download gff for RH31156.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 18815253..18815361 1..108 99 -> Plus
chr2R 18816320..18816594 109..383 100 -> Plus
chr2R 18816714..18816840 384..510 100 -> Plus
chr2R 18816910..18817801 511..1402 99 -> Plus
chr2R 18818036..18818565 1403..1932 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:44:47 Download gff for RH31156.complete
Subject Subject Range Query Range Percent Splice Strand
CG30190-RA 1..1227 175..1401 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:46:21 Download gff for RH31156.complete
Subject Subject Range Query Range Percent Splice Strand
CG42678-RI 850..2151 99..1401 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:23:56 Download gff for RH31156.complete
Subject Subject Range Query Range Percent Splice Strand
CG42678-RH 409..1710 99..1401 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:27:20 Download gff for RH31156.complete
Subject Subject Range Query Range Percent Splice Strand
CG30190-RA 1..1227 175..1401 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:58:20 Download gff for RH31156.complete
Subject Subject Range Query Range Percent Splice Strand
CG42678-RH 409..1710 99..1401 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:55:23 Download gff for RH31156.complete
Subject Subject Range Query Range Percent Splice Strand
CG30190-RA 1..1933 1..1932 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:46:21 Download gff for RH31156.complete
Subject Subject Range Query Range Percent Splice Strand
CG42678-RK 1..1931 2..1932 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:23:56 Download gff for RH31156.complete
Subject Subject Range Query Range Percent Splice Strand
CG42678-RK 1..1931 2..1932 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:27:20 Download gff for RH31156.complete
Subject Subject Range Query Range Percent Splice Strand
CG30190-RA 1..1933 1..1932 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:58:20 Download gff for RH31156.complete
Subject Subject Range Query Range Percent Splice Strand
CG42678-RK 1..1931 2..1932 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:46:30 Download gff for RH31156.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22928732..22928840 1..108 99 -> Plus
2R 22929799..22930073 109..383 100 -> Plus
2R 22930193..22930319 384..510 100 -> Plus
2R 22930389..22931280 511..1402 100 -> Plus
2R 22931515..22932044 1403..1932 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:46:30 Download gff for RH31156.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22928732..22928840 1..108 99 -> Plus
2R 22929799..22930073 109..383 100 -> Plus
2R 22930193..22930319 384..510 100 -> Plus
2R 22930389..22931280 511..1402 100 -> Plus
2R 22931515..22932044 1403..1932 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:46:30 Download gff for RH31156.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22928732..22928840 1..108 99 -> Plus
2R 22929799..22930073 109..383 100 -> Plus
2R 22930193..22930319 384..510 100 -> Plus
2R 22930389..22931280 511..1402 100 -> Plus
2R 22931515..22932044 1403..1932 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:23:56 Download gff for RH31156.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18816255..18816363 1..108 99 -> Plus
arm_2R 18817322..18817596 109..383 100 -> Plus
arm_2R 18817716..18817842 384..510 100 -> Plus
arm_2R 18817912..18818803 511..1402 100 -> Plus
arm_2R 18819038..18819567 1403..1932 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:00:24 Download gff for RH31156.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22931016..22931290 109..383 100 -> Plus
2R 22931410..22931536 384..510 100 -> Plus
2R 22931606..22932497 511..1402 100 -> Plus
2R 22932732..22933261 1403..1932 99   Plus
2R 22929949..22930057 1..108 99 -> Plus

RH31156.pep Sequence

Translation from 174 to 1400

> RH31156.pep
MHRTQDELDDVMMSSMTSSAVVMRSTATGARLLRPRNQTPVGRSGSGTRH
STGMYFTEVDVTAKNAGDFNYNIRSQDDISSGYSSAEPVSGLSRTSSMTN
ASKARAKSKRNELLEEMRDEVYLDNQLYFQGVQRKSSVPEAEELKIVESS
ESIQSQELEKVLKEENIDAEDEAFFETLPLIEEHINEVVANYGRDEKLLP
QERKHNSIEEEQFEDALFEEPQKCVSDEVDAKNIEEILTDRSQNQTPNGS
AETTDSGTPSQNKPYVHPPIDPFLLVLSASASAPDPFMPERPRPMSPREM
RETLEEIKHSFRAQLEAEPSVSASPSPSLRPKANHGKGRAPPPPLPPKKH
SLSPQPDAISQTSTGSVERKSGIGQLFKNIKANVLRNKANPSQQQPEDEQ
LAAKETQI*

RH31156.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:38:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13557-PA 192 GF13557-PA 47..179 1..133 643 90.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:38:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22817-PA 411 GG22817-PA 1..411 1..408 1806 87.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:38:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20968-PA 381 GH20968-PA 1..381 1..408 641 46.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:27
Subject Length Description Subject Range Query Range Score Percent Strand
ReepA-PK 408 CG42678-PK 1..408 1..408 2075 100 Plus
ReepA-PI 716 CG42678-PI 309..716 1..408 2075 100 Plus
ReepA-PH 569 CG42678-PH 162..569 1..408 2075 100 Plus
ReepA-PJ 570 CG42678-PJ 162..570 1..408 2063 99.8 Plus
ReepA-PQ 685 CG42678-PQ 309..680 1..372 1896 100 Plus
ReepA-PP 538 CG42678-PP 162..533 1..372 1896 100 Plus
ReepA-PL 151 CG42678-PL 1..112 1..112 560 100 Plus
ReepA-PS 312 CG42678-PS 162..273 1..112 560 100 Plus
ReepA-PR 459 CG42678-PR 309..420 1..112 560 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:38:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21305-PA 436 GI21305-PA 1..409 1..408 686 45.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:38:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16267-PA 389 GL16267-PA 1..389 1..408 1009 61.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:38:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30269-PA 550 GA30269-PA 162..550 1..408 978 60.2 Plus
Dpse\GA30269-PF 425 GA30269-PF 1..372 1..393 976 61.8 Plus
Dpse\GA30269-PE 389 GA30269-PE 1..389 1..408 975 60.2 Plus
Dpse\GA30269-PG 693 GA30269-PG 305..693 1..408 972 60.2 Plus
Dpse\GA30269-PD 153 GA30269-PD 1..111 1..112 504 87.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:38:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15974-PA 452 GM15974-PA 45..452 1..408 1834 92 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:38:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11726-PA 453 GD11726-PA 46..453 1..408 1898 93.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:38:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21571-PA 404 GJ21571-PA 1..404 1..408 636 46.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:38:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19543-PA 423 GK19543-PA 1..423 1..408 778 50.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:38:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14250-PA 413 GE14250-PA 1..413 1..408 1781 85.5 Plus

RH31156.hyp Sequence

Translation from 174 to 1400

> RH31156.hyp
MHRTQDELDDVMMSSMTSSAVVMRSTATGARLLRPRNQTPVGRSGSGTRH
STGMYFTEVDVTAKNAGDFNYNIRSQDDISSGYSSAEPVSGLSRTSSMTN
ASKARAKSKRNELLEEMRDEVYLDNQLYFQGVQRKSSVPEAEELKIVESS
ESIQSQELEKVLKEENIDAEDEAFFETLPLIEEHINEVVANYGRDEKLLP
QERKHNSIEEEQFEDALFEEPQKCVSDEVDAKNIEEILTDRSQNQTPNGS
AETTDSGTPSQNKPYVHPPIDPFLLVLSASASAPDPFMPERPRPMSPREM
RETLEEIKHSFRAQLEAEPSVSASPSPSLRPKANHGKGRAPPPPLPPKKH
SLSPQPDAISQTSTGSVERKSGIGQLFKNIKANVLRNKANPSQQQPEDEQ
LAAKETQI*

RH31156.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:25:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG42678-PK 408 CG42678-PK 1..408 1..408 2075 100 Plus
CG42678-PH 569 CG42678-PH 162..569 1..408 2075 100 Plus
CG42678-PI 716 CG42678-PI 309..716 1..408 2075 100 Plus
CG42678-PJ 570 CG42678-PJ 162..570 1..408 2063 99.8 Plus
CG42678-PP 538 CG42678-PP 162..533 1..372 1896 100 Plus