Clone RH31482 Report

Search the DGRC for RH31482

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:314
Well:82
Vector:pFlc-1
Associated Gene/TranscriptCG14414-RA
Protein status:RH31482.pep: gold
Preliminary Size:642
Sequenced Size:787

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14414 2001-12-17 Blastp of sequenced clone
CG14414 2002-01-01 Sim4 clustering to Release 2
CG14414 2003-01-01 Sim4 clustering to Release 3
CG14414 2008-04-29 Release 5.5 accounting
CG14414 2008-08-15 Release 5.9 accounting
CG14414 2008-12-18 5.12 accounting

Clone Sequence Records

RH31482.complete Sequence

787 bp (787 high quality bases) assembled on 2001-12-17

GenBank Submission: AY071717

> RH31482.complete
GGCACATCCCTAAGCCCAATAGACTGCATTTTAATTTTCATTTATTTTCG
CACACAAAATGGCTAGCACTGCCGGAACGAGTGGGTCGGGTGGCTTAAGC
GGCGGCGGCGGCGGCGGTGGAAACCCCGAGGAGGCGCGTCGCATCTGGGT
TGGGAATCTGGACTCACGGATCACCGATTCGACATGCTGTTCCACAAGGG
CGGTCCCATGGTGGGACAATCCAGGGGCTACGCCTTCGTCACCTTTGCGC
AGAACGAGGGAGCCACCAATGCGCTACTGAAACTGGACGGAACCAGCGTG
GGAAATCGCTCGATAGCCGTGCGTTTGGCCAAGAACATTAAATATGATGA
AACGCAGAAGCCAAAGCCGCGCCTGGATATACCGGCCTTGGGCACAGGTA
AACGCGAGGAGAAGGTCAGCAAAACGGAGGCCATTCGGGCCATTGAGGCC
AAGCTGAAAATGTTGGAGCGCCAGACAGACGACAATCTCGAGCTGAATAC
AGCGGGCAGGGGCGAGGCCAACGTGCCCTTCATCCAGCGCTATCAGTTTA
ACAAGGATCGCGACGGTTCGCAGCGCTACGGAAAGTCATCGGCTCCATAT
CATCACCAGCAGCGTCCCAAGCGCCACTAGGCTCAATCGACCCACACTCG
ACTTTGCCACCGTCTCACGCATTAGTCTGTAAAAATCATTAGTACTTAGG
GCGCTACCTCAGCAGACGAGCCTTGCAGGTGTAATTTACAATTAATTTAT
TAAAAAAAAAGGTACAATCAGAAAAAAAAAAAAAAAA

RH31482.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:57:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG14414-RA 830 CG14414-RA 61..830 2..771 3850 100 Plus
CG14414-RC 844 CG14414-RC 144..844 71..771 3505 100 Plus
CG14414.a 890 CG14414.a 297..890 178..771 2970 100 Plus
CG14414.a 890 CG14414.a 144..250 71..177 535 100 Plus
CG14414-RC 844 CG14414-RC 13..82 2..71 350 100 Plus
CG14414.a 890 CG14414.a 13..82 2..71 350 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:44:04
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 14472062..14472491 342..771 2120 99.5 Plus
chrX 22417052 chrX 14471057..14471163 71..177 535 100 Plus
chrX 22417052 chrX 14471896..14471992 250..346 485 100 Plus
chrX 22417052 chrX 14471282..14471356 178..252 375 100 Plus
chrX 22417052 chrX 14470926..14470995 2..71 350 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:26:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:44:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14581745..14582175 342..772 2140 99.8 Plus
X 23542271 X 14580740..14580846 71..177 535 100 Plus
X 23542271 X 14581579..14581675 250..346 485 100 Plus
X 23542271 X 14580965..14581039 178..252 375 100 Plus
X 23542271 X 14580609..14580678 2..71 350 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:16:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 14589843..14590273 342..772 2140 99.7 Plus
X 23527363 X 14588838..14588944 71..177 535 100 Plus
X 23527363 X 14589677..14589773 250..346 485 100 Plus
X 23527363 X 14589063..14589137 178..252 375 100 Plus
X 23527363 X 14588707..14588776 2..71 350 100 Plus
Blast to na_te.dros performed on 2019-03-16 09:44:03 has no hits.

RH31482.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:45:03 Download gff for RH31482.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 14470925..14470994 1..70 98 -> Plus
chrX 14471057..14471163 71..177 100 -> Plus
chrX 14471282..14471356 178..252 100 -> Plus
chrX 14471899..14471991 253..345 100 -> Plus
chrX 14472066..14472448 346..728 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:44:50 Download gff for RH31482.complete
Subject Subject Range Query Range Percent Splice Strand
CG14414-RB 1..119 59..177 95 -> Plus
CG14414-RB 166..618 178..630 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:55:27 Download gff for RH31482.complete
Subject Subject Range Query Range Percent Splice Strand
CG14414-RD 1..119 59..177 100 -> Plus
CG14414-RD 166..618 178..630 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:04:44 Download gff for RH31482.complete
Subject Subject Range Query Range Percent Splice Strand
CG14414-RD 1..119 59..177 100 -> Plus
CG14414-RD 166..618 178..630 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:37:59 Download gff for RH31482.complete
Subject Subject Range Query Range Percent Splice Strand
CG14414-RB 1..119 59..177 95 -> Plus
CG14414-RB 166..618 178..630 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:18:17 Download gff for RH31482.complete
Subject Subject Range Query Range Percent Splice Strand
CG14414-RD 1..119 59..177 100 -> Plus
CG14414-RD 166..618 178..630 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:08:50 Download gff for RH31482.complete
Subject Subject Range Query Range Percent Splice Strand
CG14414-RA 2..771 2..771 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:55:27 Download gff for RH31482.complete
Subject Subject Range Query Range Percent Splice Strand
CG14414-RA 2..771 2..771 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:04:44 Download gff for RH31482.complete
Subject Subject Range Query Range Percent Splice Strand
CG14414-RA 9..779 1..771 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:38:00 Download gff for RH31482.complete
Subject Subject Range Query Range Percent Splice Strand
CG14414-RA 2..771 2..771 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:18:17 Download gff for RH31482.complete
Subject Subject Range Query Range Percent Splice Strand
CG14414-RA 9..779 1..771 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:45:03 Download gff for RH31482.complete
Subject Subject Range Query Range Percent Splice Strand
X 14580608..14580677 1..70 98 -> Plus
X 14580740..14580846 71..177 100 -> Plus
X 14580965..14581039 178..252 100 -> Plus
X 14581582..14581674 253..345 100 -> Plus
X 14581749..14582174 346..771 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:45:03 Download gff for RH31482.complete
Subject Subject Range Query Range Percent Splice Strand
X 14580608..14580677 1..70 98 -> Plus
X 14580740..14580846 71..177 100 -> Plus
X 14580965..14581039 178..252 100 -> Plus
X 14581582..14581674 253..345 100 -> Plus
X 14581749..14582174 346..771 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:45:03 Download gff for RH31482.complete
Subject Subject Range Query Range Percent Splice Strand
X 14580608..14580677 1..70 98 -> Plus
X 14580740..14580846 71..177 100 -> Plus
X 14580965..14581039 178..252 100 -> Plus
X 14581582..14581674 253..345 100 -> Plus
X 14581749..14582174 346..771 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:04:44 Download gff for RH31482.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14474641..14474710 1..70 98 -> Plus
arm_X 14474773..14474879 71..177 100 -> Plus
arm_X 14474998..14475072 178..252 100 -> Plus
arm_X 14475615..14475707 253..345 100 -> Plus
arm_X 14475782..14476207 346..771 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:20:56 Download gff for RH31482.complete
Subject Subject Range Query Range Percent Splice Strand
X 14589847..14590272 346..771 100   Plus
X 14588706..14588775 1..70 98 -> Plus
X 14588838..14588944 71..177 100 -> Plus
X 14589063..14589137 178..252 100 -> Plus
X 14589680..14589772 253..345 100 -> Plus

RH31482.pep Sequence

Translation from 183 to 629

> RH31482.pep
MLFHKGGPMVGQSRGYAFVTFAQNEGATNALLKLDGTSVGNRSIAVRLAK
NIKYDETQKPKPRLDIPALGTGKREEKVSKTEAIRAIEAKLKMLERQTDD
NLELNTAGRGEANVPFIQRYQFNKDRDGSQRYGKSSAPYHHQQRPKRH*

RH31482.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:21:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22563-PA 207 GF22563-PA 60..206 1..147 718 90.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:21:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17848-PA 219 GG17848-PA 72..218 1..147 737 93.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:21:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11936-PA 166 GH11936-PA 12..165 1..147 641 81.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:16:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG14414-PA 148 CG14414-PA 1..148 1..148 766 100 Plus
CG14414-PC 148 CG14414-PC 1..148 1..148 766 100 Plus
CG14414-PD 205 CG14414-PD 58..205 1..148 766 100 Plus
CG14414-PE 213 CG14414-PE 66..213 1..148 766 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:21:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14138-PA 153 GI14138-PA 1..139 1..138 547 73.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:21:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20144-PA 235 GL20144-PA 63..170 1..110 417 77.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:21:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12965-PA 219 GA12965-PA 72..218 1..147 675 87.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:21:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17679-PA 204 GM17679-PA 57..204 1..148 761 96.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:21:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17174-PA 204 GD17174-PA 57..204 1..148 765 97.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:21:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19088-PA 165 GJ19088-PA 12..160 1..142 578 74.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:21:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10324-PA 209 GK10324-PA 45..207 1..147 592 73 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:21:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17147-PA 219 GE17147-PA 72..218 1..147 753 95.9 Plus

RH31482.hyp Sequence

Translation from 183 to 629

> RH31482.hyp
MLFHKGGPMVGQSRGYAFVTFAQNEGATNALLKLDGTSVGNRSIAVRLAK
NIKYDETQKPKPRLDIPALGTGKREEKVSKTEAIRAIEAKLKMLERQTDD
NLELNTAGRGEANVPFIQRYQFNKDRDGSQRYGKSSAPYHHQQRPKRH*

RH31482.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:54:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG14414-PA 148 CG14414-PA 1..148 1..148 766 100 Plus
CG14414-PC 148 CG14414-PC 1..148 1..148 766 100 Plus
CG14414-PD 205 CG14414-PD 58..205 1..148 766 100 Plus
CG14414-PE 213 CG14414-PE 66..213 1..148 766 100 Plus