Clone RH32172 Report

Search the DGRC for RH32172

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:321
Well:72
Vector:pFlc-1
Associated Gene/TranscriptCG11438-RA
Protein status:RH32172.pep: gold
Preliminary Size:1083
Sequenced Size:1260

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11438 2002-01-01 Sim4 clustering to Release 2
CG11438 2002-04-26 Blastp of sequenced clone
CG11438 2003-01-01 Sim4 clustering to Release 3
CG11438 2008-04-29 Release 5.5 accounting
CG11438 2008-08-15 Release 5.9 accounting
CG11438 2008-12-18 5.12 accounting

Clone Sequence Records

RH32172.complete Sequence

1260 bp (1260 high quality bases) assembled on 2002-04-26

GenBank Submission: AY113580

> RH32172.complete
GAGTTAAGCGCTGTTTGCCAGCCGGTCGAGTCGAGTCAATAGTCGGTCTG
CTGTTCGTGCGATACGAGAATCCCAGTCATGTCCAAGTATTCGAAGCTGG
CCCGCGGGTTCTGCGACCTGCTGATCTGGGTGGCCCTCAGCGTGGCCAGT
GTGCTGCTCCACAAGATGGGGCGTCCCTTCCGGCGCGGCTTCTTCTGTGG
CGACGAGACCCTCAGCTATCCAGCGCGCGACGGCACCATCAGCTCCAAGG
TGATCATCGCCATCGTCCTCGGAGTGCCCAACGCCGTGATCGTAGTGGTG
GAGTTGTTTAGGCAGCTGCCCGGTGGGCCGCTTAGAGAGGCGGGCGGTAA
GCGGGATAGCTGCCGGATAGCCCACCGCCTCGGGGTCCTTTATCGCCAGG
TTATCTTCTACCTGTACGGCCTCGCCATGGTCACGTTCACCACGATGCTG
ACGAAGCTGTGCCTCGGGCGTCTGCGACCGCACTTCCTCGCCGTGTGCCA
GCCCATGCTGCCGGACGGAAGCAGCTGCCAGGACGCCCAGAACCTGGGAC
GCTACATAGACAGTTTTACGTGCAGCAACGCCAACATGACCGACTACCAG
TTCAAGGAGCTCTACCAGTCCTTCCCAAGCGGCCACGCCAGCATGGCCAT
GTATGCTATGCTCTACCTGGCCATCTACCTGCAGGCGGCGCTCAGTACGC
GCGTCTCCAAGCTGCTGAAGCATCTGCTGCAGTTCCTCTTCGTCATGTTC
GGCTGGTACGTATCGCTGACTCGGATCATCGACTATTACCACCACTGGAG
CGACGTCCTGGCGGGGGCGGCATTGGGCGTGGTGTTCGCTTGGCTGACGA
GTGCCTATGTGGCCGACTTGTTTGCCGGCAAGCGGTGGCCGAAGACTGGC
TACTCGGCCAACACGCTGCGCAAGCCGCAGGTCTCGCCGAAGAGCTCCAC
CAAGTCGCAGGCGGGAGGATCCACGTCGGGAGCGGGTCAGCCGCCCGCTC
TGCCGGCCTATACCTTTGGAACGCTGCCCTACCTGGCGGCACATCCCGCA
CAGGCGCAGGCGCAGTACGCCCAGCCCTATCACAACTACGGCTACGTGCC
GTGAGCTCAGTGGCGAATTCCATTAGCGAAACCTATCTTAGAAATGCCCA
CAAACGTACACACACTCACAAACTAAGAGACTTGCACGGAATTCCTGTTT
TGTTGTCTTTATTCTAGCGAAATAAATATATTCAAGTACGATACGAAAAA
AAAAAAAAAA

RH32172.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:10:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG11438-RA 1247 CG11438-RA 2..1247 2..1247 6230 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:22:51
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 22455741..22456984 2..1245 6220 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:26:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:22:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22466833..22468078 2..1247 6230 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:41:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 22459933..22461178 2..1247 6230 100 Plus
Blast to na_te.dros performed on 2019-03-16 14:22:49 has no hits.

RH32172.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:23:47 Download gff for RH32172.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 22455740..22456984 1..1245 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:44:56 Download gff for RH32172.complete
Subject Subject Range Query Range Percent Splice Strand
CG11438-RA 1..1026 79..1104 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:54:41 Download gff for RH32172.complete
Subject Subject Range Query Range Percent Splice Strand
CG11438-RA 1..1026 79..1104 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 15:09:33 Download gff for RH32172.complete
Subject Subject Range Query Range Percent Splice Strand
CG11438-RA 1..1026 79..1104 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:47:07 Download gff for RH32172.complete
Subject Subject Range Query Range Percent Splice Strand
CG11438-RA 1..1026 79..1104 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:27:01 Download gff for RH32172.complete
Subject Subject Range Query Range Percent Splice Strand
CG11438-RA 1..1026 79..1104 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:33:31 Download gff for RH32172.complete
Subject Subject Range Query Range Percent Splice Strand
CG11438-RA 2..1245 2..1245 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:54:40 Download gff for RH32172.complete
Subject Subject Range Query Range Percent Splice Strand
CG11438-RA 2..1245 2..1245 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:09:33 Download gff for RH32172.complete
Subject Subject Range Query Range Percent Splice Strand
CG11438-RA 2..1245 2..1245 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:47:07 Download gff for RH32172.complete
Subject Subject Range Query Range Percent Splice Strand
CG11438-RA 2..1245 2..1245 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:27:01 Download gff for RH32172.complete
Subject Subject Range Query Range Percent Splice Strand
CG11438-RA 2..1245 2..1245 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:23:47 Download gff for RH32172.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22466832..22468076 1..1245 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:23:47 Download gff for RH32172.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22466832..22468076 1..1245 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:23:47 Download gff for RH32172.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22466832..22468076 1..1245 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:09:33 Download gff for RH32172.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22459932..22461176 1..1245 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:19:47 Download gff for RH32172.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22459932..22461176 1..1245 99   Plus

RH32172.pep Sequence

Translation from 78 to 1103

> RH32172.pep
MSKYSKLARGFCDLLIWVALSVASVLLHKMGRPFRRGFFCGDETLSYPAR
DGTISSKVIIAIVLGVPNAVIVVVELFRQLPGGPLREAGGKRDSCRIAHR
LGVLYRQVIFYLYGLAMVTFTTMLTKLCLGRLRPHFLAVCQPMLPDGSSC
QDAQNLGRYIDSFTCSNANMTDYQFKELYQSFPSGHASMAMYAMLYLAIY
LQAALSTRVSKLLKHLLQFLFVMFGWYVSLTRIIDYYHHWSDVLAGAALG
VVFAWLTSAYVADLFAGKRWPKTGYSANTLRKPQVSPKSSTKSQAGGSTS
GAGQPPALPAYTFGTLPYLAAHPAQAQAQYAQPYHNYGYVP*

RH32172.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:44:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10978-PA 335 GF10978-PA 1..335 1..341 1285 76.9 Plus
Dana\GF13080-PA 377 GF13080-PA 82..365 7..287 566 39.2 Plus
Dana\GF11822-PA 347 GF11822-PA 89..344 9..259 536 43.4 Plus
Dana\GF10980-PA 345 GF10980-PA 63..294 33..265 515 41.8 Plus
Dana\GF23463-PA 331 GF23463-PA 4..234 34..277 473 42.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:44:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16256-PA 341 GG16256-PA 1..341 1..341 1665 91 Plus
Dere\GG10557-PA 372 GG10557-PA 80..363 7..287 575 40.5 Plus
Dere\GG16258-PA 340 GG16258-PA 61..295 33..268 485 43.2 Plus
Dere\GG13182-PA 337 GG13182-PA 4..274 34..309 470 38.5 Plus
Dere\GG23436-PA 351 GG23436-PA 89..348 7..259 458 37.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:44:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16692-PA 348 GH16692-PA 1..348 1..341 1284 69.7 Plus
Dgri\GH21309-PA 380 GH21309-PA 92..352 7..266 558 40.7 Plus
Dgri\GH16694-PA 345 GH16694-PA 41..296 9..265 535 40.9 Plus
Dgri\GH14815-PA 385 GH14815-PA 2..229 32..269 491 42.9 Plus
Dgri\GH20575-PA 365 GH20575-PA 130..360 32..254 490 44.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:36:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG11438-PB 341 CG11438-PB 1..341 1..341 1794 100 Plus
CG11438-PA 341 CG11438-PA 1..341 1..341 1794 100 Plus
wun-PA 300 CG8804-PA 8..291 7..287 577 41.5 Plus
wun-PB 379 CG8804-PB 87..370 7..287 577 41.5 Plus
wun-PC 364 CG8804-PC 87..343 7..258 548 42.1 Plus
CG11426-PA 340 CG11426-PA 41..292 13..265 531 42.7 Plus
wun2-PB 246 CG8805-PB 8..238 31..254 500 42.2 Plus
wun2-PA 350 CG8805-PA 112..342 31..254 500 42.2 Plus
laza-PA 334 CG11440-PA 4..258 34..293 486 40.1 Plus
CG11425-PA 305 CG11425-PA 35..247 31..250 375 37.1 Plus
CG11437-PA 305 CG11437-PA 10..279 7..269 318 33.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:44:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11380-PA 340 GI11380-PA 1..340 1..341 1287 72.8 Plus
Dmoj\GI19743-PA 298 GI19743-PA 8..272 7..268 588 43.6 Plus
Dmoj\GI11383-PA 345 GI11383-PA 40..297 7..265 526 42 Plus
Dmoj\GI19768-PA 375 GI19768-PA 133..372 26..259 518 39.2 Plus
Dmoj\GI13921-PA 361 GI13921-PA 2..224 32..265 509 44.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:44:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23143-PA 328 GL23143-PA 1..328 1..341 1353 74.5 Plus
Dper\GL16886-PA 306 GL16886-PA 8..271 7..265 576 42.4 Plus
Dper\GL23165-PA 343 GL23165-PA 61..313 33..286 503 40.1 Plus
Dper\GL17588-PA 372 GL17588-PA 108..369 7..259 501 39.7 Plus
Dper\GL23176-PA 274 GL23176-PA 2..199 47..250 303 34.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:44:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11005-PA 343 GA11005-PA 1..343 1..341 1454 78 Plus
Dpse\GA21332-PA 386 GA21332-PA 88..351 7..265 574 41.7 Plus
Dpse\GA21332-PC 306 GA21332-PC 8..271 7..265 569 41.7 Plus
Dpse\GA21332-PB 365 GA21332-PB 88..344 7..258 546 41.3 Plus
Dpse\GA10999-PA 343 GA10999-PA 61..313 33..286 503 40.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:44:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22445-PA 341 GM22445-PA 1..341 1..341 1747 96.2 Plus
Dsec\GM20603-PA 372 GM20603-PA 80..363 7..287 579 40.5 Plus
Dsec\GM22448-PA 340 GM22448-PA 61..295 33..268 535 44.1 Plus
Dsec\GM22093-PA 337 GM22093-PA 4..270 34..305 485 39.8 Plus
Dsec\GM21120-PA 350 GM21120-PA 112..342 31..254 466 42.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:44:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15029-PA 341 GD15029-PA 1..341 1..341 1780 97.7 Plus
Dsim\GD10076-PA 372 GD10076-PA 80..363 7..287 586 40.8 Plus
Dsim\GD15031-PA 340 GD15031-PA 61..295 33..268 536 44.1 Plus
Dsim\GD12067-PA 343 GD12067-PA 4..258 34..293 485 40.8 Plus
Dsim\GD10653-PA 350 GD10653-PA 112..342 31..254 466 42.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:44:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11635-PA 345 GJ11635-PA 1..345 1..341 1324 74.4 Plus
Dvir\GJ18026-PA 378 GJ18026-PA 88..355 7..273 593 42.2 Plus
Dvir\GJ11638-PA 337 GJ11638-PA 33..288 9..265 514 40 Plus
Dvir\GJ13711-PA 340 GJ13711-PA 2..227 32..268 500 42.9 Plus
Dvir\GJ18273-PA 332 GJ18273-PA 83..309 32..254 491 46.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:44:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16759-PA 364 GK16759-PA 1..364 1..341 1287 67.9 Plus
Dwil\GK21745-PA 385 GK21745-PA 91..381 7..291 588 41.6 Plus
Dwil\GK16761-PA 362 GK16761-PA 58..309 13..265 552 43.1 Plus
Dwil\GK17452-PA 349 GK17452-PA 2..238 32..278 516 43.8 Plus
Dwil\GK21557-PA 361 GK21557-PA 98..353 9..254 499 42 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:44:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23017-PA 341 GE23017-PA 1..341 1..341 1607 92.7 Plus
Dyak\GE19504-PA 274 GE19504-PA 1..274 1..341 1074 69.5 Plus
Dyak\GE22302-PA 369 GE22302-PA 77..360 7..287 595 41.3 Plus
Dyak\GE23019-PA 340 GE23019-PA 61..292 33..265 481 41.4 Plus
Dyak\GE19506-PA 340 GE19506-PA 61..292 33..265 479 41.4 Plus

RH32172.hyp Sequence

Translation from 78 to 1103

> RH32172.hyp
MSKYSKLARGFCDLLIWVALSVASVLLHKMGRPFRRGFFCGDETLSYPAR
DGTISSKVIIAIVLGVPNAVIVVVELFRQLPGGPLREAGGKRDSCRIAHR
LGVLYRQVIFYLYGLAMVTFTTMLTKLCLGRLRPHFLAVCQPMLPDGSSC
QDAQNLGRYIDSFTCSNANMTDYQFKELYQSFPSGHASMAMYAMLYLAIY
LQAALSTRVSKLLKHLLQFLFVMFGWYVSLTRIIDYYHHWSDVLAGAALG
VVFAWLTSAYVADLFAGKRWPKTGYSANTLRKPQVSPKSSTKSQAGGSTS
GAGQPPALPAYTFGTLPYLAAHPAQAQAQYAQPYHNYGYVP*

RH32172.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:49:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG11438-PB 341 CG11438-PB 1..341 1..341 1794 100 Plus
CG11438-PA 341 CG11438-PA 1..341 1..341 1794 100 Plus
wun-PA 300 CG8804-PA 8..291 7..287 577 41.5 Plus
wun-PB 379 CG8804-PB 87..370 7..287 577 41.5 Plus
wun-PC 364 CG8804-PC 87..343 7..258 548 42.1 Plus