BDGP Sequence Production Resources |
Search the DGRC for RH32892
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 328 |
Well: | 92 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG1674-RD |
Protein status: | RH32892.pep: gold |
Preliminary Size: | 2388 |
Sequenced Size: | 1477 |
Gene | Date | Evidence |
---|---|---|
CG1674 | 2002-10-18 | Blastp of sequenced clone |
CG1674 | 2003-01-01 | Sim4 clustering to Release 3 |
CG1674 | 2008-04-29 | Release 5.5 accounting |
CG1674 | 2008-08-15 | Release 5.9 accounting |
CG1674 | 2008-12-18 | 5.12 accounting |
1477 bp (1477 high quality bases) assembled on 2002-10-18
GenBank Submission: BT001809
> RH32892.complete GAGTGGAAGCTATCTTTGATGTGCAATCATATTCTTAAAGGCAGGCGCAT GAATTCATGTTCATTCTATTGGCCTATACGGATTTTAGTTGTATTATTAT CTTTCAATAATTCGATACTACAGTATTGTTTGCAGTAAATATTTTTTTAA ACAAATAACATTGGGAAATAGGCAAGTGAAAAGATATATTTGATATATAT TTGTACAGCTTTTAGATATGGATTCTACTTTAAATATTGAGAATGTCAAT GACCCAACATCCATTGCATCTGATTTATCGGCCGAAAACACTAAAGCAGA CCTTGTTTCGCTAAATGAACCGAATGTCAATGACCAAACATCCAGTGCAT CTGATTTGACGGCCGAAAACACTAAAGCAGACCATGATTCGCTAAATAAA CCTAAGGATTTTAATAACCAAATTCTGAACATTATATCGGATATAGATAT AAATATAAAAGCACAGGAAAAAATAACACAGCTTAAAGAACAAGAACTAA AACTCATTCAGAAACAGAATGATCTGGCAAATGAAATCCATAAGCAGCAG ATCCTAGCTAAGCAGCTTAGTGCACAAAATCAGCTTAAACAAAATGAATG TCAAAGTGGAGAGCTCGACTTACACAGTCAATATCAAAATGAGCGCGGCG GACCCACCTCGACACTGTATCAGGAAAAAAATATAGCCAGTAAAGAATCC GCTAATGTGTCGAAGACGGTTGATTTGCGAAAAATATTTACACCTGCGAC CGATGCTGCTGAAATATTACCGAAAAACCGAAAGCTATATGCCTCGTCTG CATTTTATTCTCCAACACTACACCCTACAGTGGAAGACCAAGTCGAGCTA GCTCGAAGAATTTCACATTCATTAAGCGATATAAGTAATCAAACCTCTAA GGGTCAGTCTATGTATGTCAATCGCAAAAAACGCTCAGACAAATGGGTTC ATGAAGGTGGATCTCAAGGTAATGTTTTTTTTCAATATTTTTTGTTGTCA GTCAGTTATTAATCAATTCTAGTTCCTACAATTGTATTATTATAACACTG ATTGCAACTTTTAGTACAGTGGTCAAGAAAAATCTCATTAGTCTAACTCT CCACTATAACAGGGATACCACGTTTCCCATTGTATGTGATTTTTGTTAAA AATTTAAGTTTCTTGAATAGATTTTTATAATAAAACGATTATTTTTAACT TGGTTTAACATAAACAATTCAACTGTTTATACGTTAAATAAAATTAATGT ATTAGTATGTTCCCCAGTAATAAACACGTACAGTGCAGTCTTGATAGTTT TCCGGTGCGACACTAATTTTCTGTTGTAATGTAATGAACTAAAAAATATA ACATGTAGGAAATATTTTAAAAATATTGAAAAAAATACAAGTGACGATTG CACCTTCAACACATGTACAAAAGATCTAATACTAATAAATTTTTATGACG AAGAAAAAAAGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG1674-RD | 1453 | CG1674-RD | 3..1453 | 3..1453 | 7240 | 99.9 | Plus |
CG1674-RH | 3045 | CG1674-RH | 834..1566 | 242..974 | 3650 | 99.8 | Plus |
CG1674.m | 3204 | CG1674.m | 1043..1694 | 323..974 | 3245 | 99.8 | Plus |
CG1674-RH | 3045 | CG1674-RH | 25..263 | 3..241 | 1195 | 100 | Plus |
CG1674.m | 3204 | CG1674.m | 99..267 | 3..171 | 845 | 100 | Plus |
CG1674.m | 3204 | CG1674.m | 881..1015 | 242..376 | 435 | 88.1 | Plus |
CG1674-RH | 3045 | CG1674-RH | 914..994 | 241..321 | 300 | 91.3 | Plus |
CG1674.m | 3204 | CG1674.m | 1043..1122 | 242..321 | 295 | 91.2 | Plus |
CG1674.m | 3204 | CG1674.m | 881..960 | 323..402 | 295 | 91.2 | Plus |
CG1674.m | 3204 | CG1674.m | 264..310 | 195..241 | 220 | 97.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr4 | 1351717 | chr4 | 261221..261897 | 780..1455 | 3320 | 99.7 | Plus |
chr4 | 1351717 | chr4 | 257849..258140 | 404..695 | 1460 | 100 | Plus |
chr4 | 1351717 | chr4 | 252025..252220 | 3..198 | 980 | 100 | Plus |
chr4 | 1351717 | chr4 | 260890..260986 | 695..791 | 440 | 96.9 | Plus |
chr4 | 1351717 | chr4 | 254844..254926 | 240..322 | 415 | 100 | Plus |
chr4 | 1351717 | chr4 | 256974..257055 | 322..403 | 410 | 100 | Plus |
chr4 | 1351717 | chr4 | 256973..257054 | 240..321 | 305 | 91.5 | Plus |
chr4 | 1351717 | chr4 | 254845..254925 | 322..402 | 300 | 91.4 | Plus |
chr4 | 1351717 | chr4 | 252523..252570 | 194..241 | 225 | 97.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
4 | 1348131 | 4 | 240645..241320 | 780..1455 | 3365 | 99.9 | Plus |
4 | 1348131 | 4 | 237269..237560 | 404..695 | 1460 | 100 | Plus |
4 | 1348131 | 4 | 231432..231627 | 3..198 | 980 | 100 | Plus |
4 | 1348131 | 4 | 240314..240410 | 695..791 | 440 | 96.9 | Plus |
4 | 1348131 | 4 | 234263..234345 | 240..322 | 415 | 100 | Plus |
4 | 1348131 | 4 | 236394..236475 | 322..403 | 410 | 100 | Plus |
4 | 1348131 | 4 | 236393..236474 | 240..321 | 305 | 91.5 | Plus |
4 | 1348131 | 4 | 234264..234344 | 322..402 | 300 | 91.4 | Plus |
4 | 1348131 | 4 | 231930..231977 | 194..241 | 225 | 97.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
4 | 1331231 | 4 | 240645..241320 | 780..1455 | 3365 | 99.8 | Plus |
4 | 1331231 | 4 | 237269..237560 | 404..695 | 1460 | 100 | Plus |
4 | 1331231 | 4 | 231432..231627 | 3..198 | 980 | 100 | Plus |
4 | 1331231 | 4 | 240314..240410 | 695..791 | 440 | 96.9 | Plus |
4 | 1331231 | 4 | 234263..234345 | 240..322 | 415 | 100 | Plus |
4 | 1331231 | 4 | 236394..236475 | 322..403 | 410 | 100 | Plus |
4 | 1331231 | 4 | 236393..236474 | 240..321 | 305 | 91.4 | Plus |
4 | 1331231 | 4 | 234264..234344 | 322..402 | 300 | 91.3 | Plus |
4 | 1331231 | 4 | 231930..231977 | 194..241 | 225 | 97.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Transpac | 5249 | Transpac 5249bp Derived from AF222049 (AF222049.1) (Rel. 62, Last updated, Version 1). | 3780..4108 | 1135..1456 | 141 | 52.7 | Plus |
Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 7018..7119 | 1230..1132 | 133 | 61.8 | Minus |
micropia | 5461 | micropia DMDM11 5461bp | 3249..3308 | 675..733 | 117 | 68.3 | Plus |
412 | 7567 | 412 412 7567bp | 1779..1832 | 1332..1385 | 117 | 68.5 | Plus |
Tirant | 8526 | Tirant TIRANT 8526bp | 577..646 | 447..516 | 116 | 62.9 | Plus |
Tc1 | 1666 | Tc1 TC1 1666bp | 1410..1563 | 1460..1310 | 114 | 54.5 | Minus |
Tirant | 8526 | Tirant TIRANT 8526bp | 4018..4150 | 403..544 | 113 | 58 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr4 | 252023..252220 | 1..198 | 99 | -> | Plus |
chr4 | 252528..252570 | 199..241 | 100 | -> | Plus |
chr4 | 254846..254926 | 242..322 | 100 | -> | Plus |
chr4 | 256975..257055 | 323..403 | 100 | -> | Plus |
chr4 | 257849..258139 | 404..694 | 100 | -> | Plus |
chr4 | 260890..260974 | 695..779 | 100 | -> | Plus |
chr4 | 261221..261897 | 780..1455 | 95 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1674-RD | 1..795 | 218..1012 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1674-RD | 1..795 | 218..1012 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1674-RD | 1..795 | 218..1012 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1674-RD | 1..795 | 218..1012 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1674-RD | 1..795 | 218..1012 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1674-RD | 1..1459 | 1..1459 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1674-RD | 1..1453 | 1..1453 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1674-RD | 5..1457 | 1..1453 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1674-RD | 1..1459 | 1..1459 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1674-RD | 5..1457 | 1..1453 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
4 | 231430..231627 | 1..198 | 99 | -> | Plus |
4 | 231935..231977 | 199..241 | 100 | -> | Plus |
4 | 234265..234345 | 242..322 | 100 | -> | Plus |
4 | 236395..236475 | 323..403 | 100 | -> | Plus |
4 | 237269..237559 | 404..694 | 100 | -> | Plus |
4 | 240314..240398 | 695..779 | 100 | -> | Plus |
4 | 240645..241320 | 780..1455 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
4 | 231430..231627 | 1..198 | 99 | -> | Plus |
4 | 231935..231977 | 199..241 | 100 | -> | Plus |
4 | 234265..234345 | 242..322 | 100 | -> | Plus |
4 | 236395..236475 | 323..403 | 100 | -> | Plus |
4 | 237269..237559 | 404..694 | 100 | -> | Plus |
4 | 240314..240398 | 695..779 | 100 | -> | Plus |
4 | 240645..241320 | 780..1455 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
4 | 231430..231627 | 1..198 | 99 | -> | Plus |
4 | 231935..231977 | 199..241 | 100 | -> | Plus |
4 | 234265..234345 | 242..322 | 100 | -> | Plus |
4 | 236395..236475 | 323..403 | 100 | -> | Plus |
4 | 237269..237559 | 404..694 | 100 | -> | Plus |
4 | 240314..240398 | 695..779 | 100 | -> | Plus |
4 | 240645..241320 | 780..1455 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_4 | 252056..252253 | 1..198 | 99 | -> | Plus |
arm_4 | 252561..252603 | 199..241 | 100 | -> | Plus |
arm_4 | 254891..254971 | 242..322 | 100 | -> | Plus |
arm_4 | 257021..257101 | 323..403 | 100 | -> | Plus |
arm_4 | 257895..258185 | 404..694 | 100 | -> | Plus |
arm_4 | 260940..261024 | 695..779 | 100 | -> | Plus |
arm_4 | 261271..261946 | 780..1455 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
4 | 237269..237559 | 404..694 | 100 | -> | Plus |
4 | 240314..240398 | 695..779 | 100 | -> | Plus |
4 | 240645..241320 | 780..1455 | 99 | Plus | |
4 | 231430..231627 | 1..198 | 99 | -> | Plus |
4 | 231935..231977 | 199..241 | 100 | -> | Plus |
4 | 234265..234345 | 242..322 | 100 | -> | Plus |
4 | 236395..236475 | 323..403 | 100 | -> | Plus |
Translation from 217 to 1011
> RH32892.pep MDSTLNIENVNDPTSIASDLSAENTKADLVSLNEPNVNDQTSSASDLTAE NTKADHDSLNKPKDFNNQILNIISDIDINIKAQEKITQLKEQELKLIQKQ NDLANEIHKQQILAKQLSAQNQLKQNECQSGELDLHSQYQNERGGPTSTL YQEKNIASKESANVSKTVDLRKIFTPATDAAEILPKNRKLYASSAFYSPT LHPTVEDQVELARRISHSLSDISNQTSKGQSMYVNRKKRSDKWVHEGGSQ GNVFFQYFLLSVSY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21685-PA | 93 | GF21685-PA | 4..93 | 163..252 | 450 | 93.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16382-PA | 884 | GG16382-PA | 206..458 | 12..252 | 903 | 79.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH23958-PA | 897 | GH23958-PA | 258..462 | 63..251 | 510 | 67.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG1674-PD | 264 | CG1674-PD | 1..264 | 1..264 | 1332 | 100 | Plus |
CG1674-PJ | 694 | CG1674-PJ | 1..252 | 1..252 | 1271 | 100 | Plus |
CG1674-PI | 589 | CG1674-PI | 1..255 | 1..257 | 1260 | 98.4 | Plus |
CG1674-PK | 860 | CG1674-PK | 1..279 | 1..252 | 1233 | 90.3 | Plus |
CG1674-PH | 884 | CG1674-PH | 198..442 | 8..252 | 1233 | 99.6 | Plus |
CG1674-PF | 884 | CG1674-PF | 198..442 | 8..252 | 1233 | 99.6 | Plus |
CG1674-PE | 884 | CG1674-PE | 198..442 | 8..252 | 1233 | 99.6 | Plus |
CG1674-PM | 843 | CG1674-PM | 198..442 | 8..252 | 1225 | 99.2 | Plus |
CG1674-PL | 905 | CG1674-PL | 1..324 | 1..252 | 1177 | 77.8 | Plus |
CG1674-PB | 743 | CG1674-PB | 198..425 | 8..207 | 869 | 80.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14038-PA | 878 | GI14038-PA | 215..439 | 45..251 | 551 | 62.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18162-PA | 650 | GL18162-PA | 1..194 | 63..252 | 584 | 73.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14119-PA | 637 | GA14119-PA | 9..202 | 63..252 | 583 | 73.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26789-PA | 778 | GM26789-PA | 198..444 | 8..257 | 1088 | 91.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24401-PA | 808 | GD24401-PA | 32..270 | 5..207 | 710 | 70.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12646-PA | 901 | GJ12646-PA | 234..463 | 63..250 | 530 | 59.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13676-PA | 1050 | GK13676-PA | 214..423 | 15..250 | 600 | 60.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE14542-PA | 886 | GE14542-PA | 216..462 | 4..252 | 920 | 80.3 | Plus |
Translation from 217 to 1011
> RH32892.hyp MDSTLNIENVNDPTSIASDLSAENTKADLVSLNEPNVNDQTSSASDLTAE NTKADHDSLNKPKDFNNQILNIISDIDINIKAQEKITQLKEQELKLIQKQ NDLANEIHKQQILAKQLSAQNQLKQNECQSGELDLHSQYQNERGGPTSTL YQEKNIASKESANVSKTVDLRKIFTPATDAAEILPKNRKLYASSAFYSPT LHPTVEDQVELARRISHSLSDISNQTSKGQSMYVNRKKRSDKWVHEGGSQ GNVFFQYFLLSVSY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG1674-PD | 264 | CG1674-PD | 1..264 | 1..264 | 1332 | 100 | Plus |
CG1674-PJ | 694 | CG1674-PJ | 1..252 | 1..252 | 1271 | 100 | Plus |
CG1674-PI | 589 | CG1674-PI | 1..255 | 1..257 | 1260 | 98.4 | Plus |
CG1674-PK | 860 | CG1674-PK | 1..279 | 1..252 | 1233 | 90.3 | Plus |
CG1674-PH | 884 | CG1674-PH | 198..442 | 8..252 | 1233 | 99.6 | Plus |