Clone RH33260 Report

Search the DGRC for RH33260

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:332
Well:60
Vector:pFlc-1
Associated Gene/TranscriptCG11073-RB
Protein status:RH33260.pep: gold
Sequenced Size:1944

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11073 2009-07-02 Manual selection by Sue Celniker

Clone Sequence Records

RH33260.complete Sequence

1944 bp assembled on 2009-11-17

GenBank Submission: BT100295.1

> RH33260.complete
ATTGAAAGCGCAGAATCCGTGAGCTACGGACGTGTTTCGCTCGAGCGCAT
CGCGCATCTCCCAGATACGACCTACGATCTCCATCGCTCTTGCTCGCTCG
CACCGCCGCCCTCCGCGCATAGCACCCTCTCGCTCGCGCACCGAAGTGAT
CGTGATATCGTGCCGCGGATTTTATTCCGATTGAGAAAAGGCGGTGAAAA
TATTACACATTATAGTTGTCGGCTTCGATTGCGACGCCTGCGATTTTGTC
ATCGCGATCATTGTTGGCCGGATCGACGGCTCCTACGCGATATAATTGTA
TTCCCGCCGATCTCGCTGCCATCCCCTTTGGGCAATGCCCAATTCCAAAT
TGTTAATTGCGTGACAAATTCGAAAAGGGGTTAATATATAAAGAGAAATA
ATACGAGCAGTAAGCCAAAACGCGAAGCTCCGTGCTCACCCACGAGATAA
TGCAGTTCGATCCGAAGACACGATGCGGTGGCAGCGTGGTTAGCTTTACC
GTTATGCTGCTGCTGATCATCGGCGCCGATTTCGCCGCTGGAAGGCCTGA
TGTGCGCGAGTCGCCCTTCGCCCTCAATCTGCAGCCTCCGCTGCTGCAGT
CGGACGTGACCTTCAGTTCAGGCCAGGGGGGTGGTGCCGGGCCGAAGGCC
ATCGACAGCTACGGCAACCCCATCGACGCCCTGCGACCCATCGATACGCC
CGACGGGCGCAAGGTGGTCAGCGCCCAGGGCGTTCAGTTTGAGATACCCA
CATACGCCTCGGGAATCACGGAGATCCGGCGGCCGGCCGATGATCTTCTG
CCGCCACACATTGATAACACGCCGAAGGATTCGAGCAGCAGTGGCAGCAG
CAGCACCACAACTTTCGTCAACACCACTCCAAGCCCGTTGGATGCTGGCA
ACCCATTCGATTCGGCCACCATTCCTGCCTGGCTGCGTGACTTCGACTAT
CCGGATGTCGGACCGGGCGTGCCCTTTGACCCGGACAACTTTGGAACAGC
GTCGGCCAGCAGCACCCGTAACCCCACCAATCCGCCACGTCCCCCCACCG
TCCCGCCCGTTTCCTCCGCTTTTCCATCCAAAGTCACGCTTCCGCTTCCA
GGCAGCAGCATCAGTAGCAGTAGCAGTGAGGAACCACAGCTGGTACTCGT
TCCGCCCGCTGACCGCGCGGAGGCCGCTTCTGGTTCCGACTCCCAATTCG
GCCCCAATCCTGGACAACTGACCCAACCCACTTCCAACTCTGTCACGCCT
TTTGCAGCCCGCTTCGAGCCATCGGCCAGCAGCTCCAGCTCCCAGAGCGT
TGAACCCTTCCCGCCCAGCAAGGTGGAGTACACCAAGAGCGACGAGGGCA
AGGTCATCAGCACGCCGGTCACCAACAATCAGCGAAAAACGGAGACTGTT
GCACCTCCAGCTAGCAACACCGGGAAGTACACGGGAGGATTTGGTGCACC
GCCTGGCCTACTGCGCCCACAGTCAACCAATCCCTCGGTCTCCAATTCGG
GACCCAATTCCAATCCGAGACCCGGCTCCGACATCTATGTGGCTGGCAAC
CAACACGAGTTCAGCAGTGTTTTGAAGGCGAACAAGGCACGACCCACCGT
GAATCCGGGTCGCTACAACGGCGGATTCGGGGCGCCCACGGGAGTTCTTT
CGCCTCAAGCGCAGGCGGAGCCACGTCCCTTCCAGCCAATTAACCAGCGA
ACGGAACACAGGGAACAGTCATCCGGTGGCAACAGGAGGACTGAGAGCCG
TTTTGGTGGACCGCCTGGCATTCTCGTGCCCTTCGACAACGTGCAGCGAA
CTGGGGGGCAGTAGAAGGCAGTCCAGGAGTTCGCAAATACTTTAAATTAT
TTATAGCCCATGTACATGTACCTATGCTAGAGCTAAGTAAAGTAACTGAC
CCGCGGGTCACCACAGTACTTGCACAACAAAAAAAAAAAAAAAA

RH33260.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:45:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG11073-RB 2238 CG11073-RB 197..2129 1..1933 9635 99.8 Plus
CG11073.a 1904 CG11073.a 744..1865 812..1933 5580 99.8 Plus
CG11073-RA 4044 CG11073-RA 2815..3935 813..1933 5575 99.8 Plus
CG11073-RA 4044 CG11073-RA 197..1009 1..813 4065 100 Plus
CG11073.a 1904 CG11073.a 197..747 1..551 2755 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:41:53
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 17978572..17979148 1389..813 2795 99 Minus
chr2R 21145070 chr2R 17977952..17978489 1927..1390 2615 99.1 Minus
chr2R 21145070 chr2R 17985403..17985950 549..1 2560 98.2 Minus
chr2R 21145070 chr2R 17980954..17981218 813..549 1295 99.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:27:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:41:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22092142..22092718 1389..813 2885 100 Minus
2R 25286936 2R 22098982..22099530 549..1 2745 100 Minus
2R 25286936 2R 22091516..22092059 1933..1390 2690 99.6 Minus
2R 25286936 2R 22094524..22094788 813..549 1325 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:42:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 22093341..22093917 1389..813 2885 100 Minus
2R 25260384 2R 22100181..22100729 549..1 2745 100 Minus
2R 25260384 2R 22092715..22093258 1933..1390 2690 99.6 Minus
2R 25260384 2R 22095723..22095987 813..549 1325 100 Minus
Blast to na_te.dros performed on 2019-03-15 16:41:51 has no hits.

RH33260.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:42:45 Download gff for RH33260.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 17977951..17978489 1390..1928 98 <- Minus
chr2R 17978572..17979147 814..1389 98 <- Minus
chr2R 17980954..17981217 550..813 99 <- Minus
chr2R 17985403..17985950 1..549 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-11-17 10:53:41 Download gff for RH33260.complete
Subject Subject Range Query Range Percent Splice Strand
CG11073-RA 1..364 450..813 100 -> Plus
CG11073-RA 2171..3171 814..1814 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:25:02 Download gff for RH33260.complete
Subject Subject Range Query Range Percent Splice Strand
CG11073-RB 1..1365 450..1814 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:20:55 Download gff for RH33260.complete
Subject Subject Range Query Range Percent Splice Strand
CG11073-RB 1..1365 450..1814 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:46:39 Download gff for RH33260.complete
Subject Subject Range Query Range Percent Splice Strand
CG11073-RB 1..1365 450..1814 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-11-17 10:53:41 Download gff for RH33260.complete
Subject Subject Range Query Range Percent Splice Strand
CG11073-RA 197..1009 1..813 100 -> Plus
CG11073-RA 2816..3929 814..1928 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:25:02 Download gff for RH33260.complete
Subject Subject Range Query Range Percent Splice Strand
CG11073-RB 197..2123 1..1928 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:20:55 Download gff for RH33260.complete
Subject Subject Range Query Range Percent Splice Strand
CG11073-RB 5..1931 1..1928 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:46:39 Download gff for RH33260.complete
Subject Subject Range Query Range Percent Splice Strand
CG11073-RB 5..1931 1..1928 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:42:45 Download gff for RH33260.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22091521..22092059 1390..1928 99 <- Minus
2R 22092142..22092717 814..1389 100 <- Minus
2R 22094524..22094787 550..813 100 <- Minus
2R 22098982..22099530 1..549 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:42:45 Download gff for RH33260.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22091521..22092059 1390..1928 99 <- Minus
2R 22092142..22092717 814..1389 100 <- Minus
2R 22094524..22094787 550..813 100 <- Minus
2R 22098982..22099530 1..549 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:42:45 Download gff for RH33260.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22091521..22092059 1390..1928 99 <- Minus
2R 22092142..22092717 814..1389 100 <- Minus
2R 22094524..22094787 550..813 100 <- Minus
2R 22098982..22099530 1..549 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:20:55 Download gff for RH33260.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17982029..17982292 550..813 100 <- Minus
arm_2R 17979026..17979564 1390..1928 99 <- Minus
arm_2R 17979647..17980222 814..1389 100 <- Minus
arm_2R 17986487..17987035 1..549 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:12:00 Download gff for RH33260.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22095723..22095986 550..813 100 <- Minus
2R 22092720..22093258 1390..1928 99 <- Minus
2R 22093341..22093916 814..1389 100 <- Minus
2R 22100181..22100729 1..549 100   Minus

RH33260.pep Sequence

Translation from 449 to 1813

> RH33260.pep
MQFDPKTRCGGSVVSFTVMLLLIIGADFAAGRPDVRESPFALNLQPPLLQ
SDVTFSSGQGGGAGPKAIDSYGNPIDALRPIDTPDGRKVVSAQGVQFEIP
TYASGITEIRRPADDLLPPHIDNTPKDSSSSGSSSTTTFVNTTPSPLDAG
NPFDSATIPAWLRDFDYPDVGPGVPFDPDNFGTASASSTRNPTNPPRPPT
VPPVSSAFPSKVTLPLPGSSISSSSSEEPQLVLVPPADRAEAASGSDSQF
GPNPGQLTQPTSNSVTPFAARFEPSASSSSSQSVEPFPPSKVEYTKSDEG
KVISTPVTNNQRKTETVAPPASNTGKYTGGFGAPPGLLRPQSTNPSVSNS
GPNSNPRPGSDIYVAGNQHEFSSVLKANKARPTVNPGRYNGGFGAPTGVL
SPQAQAEPRPFQPINQRTEHREQSSGGNRRTESRFGGPPGILVPFDNVQR
TGGQ*

RH33260.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:04:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11592-PA 1007 GF11592-PA 699..1007 142..454 779 62.7 Plus
Dana\GF11592-PA 1007 GF11592-PA 1..120 1..127 438 72.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:04:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20719-PA 1049 GG20719-PA 718..1049 120..454 1256 86.8 Plus
Dere\GG20719-PA 1049 GG20719-PA 1..139 1..137 613 85.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:04:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21338-PA 825 GH21338-PA 491..825 151..454 565 45.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG11073-PB 454 CG11073-PB 1..454 1..454 2385 100 Plus
CG11073-PD 808 CG11073-PD 474..808 120..454 1765 99.7 Plus
CG11073-PC 896 CG11073-PC 562..896 120..454 1765 99.7 Plus
CG11073-PA 1056 CG11073-PA 722..1056 120..454 1765 99.7 Plus
CG11073-PE 307 CG11073-PE 108..307 256..454 981 93.5 Plus
CG11073-PE 307 CG11073-PE 1..297 1..340 649 49.7 Plus
CG11073-PC 896 CG11073-PC 1..169 1..169 646 78.3 Plus
CG11073-PA 1056 CG11073-PA 1..137 1..137 636 89.8 Plus
CG11073-PD 808 CG11073-PD 1..509 1..447 198 24 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:04:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20755-PA 909 GI20755-PA 32..124 27..122 359 74.2 Plus
Dmoj\GI20755-PA 909 GI20755-PA 552..582 151..181 156 80.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:04:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11840-PA 556 GL11840-PA 260..556 155..454 362 36.5 Plus
Dper\GL11840-PA 556 GL11840-PA 89..174 34..121 328 73.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:04:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10744-PB 1109 GA10744-PB 749..1109 142..454 640 49.9 Plus
Dpse\GA10744-PB 1109 GA10744-PB 5..118 8..121 381 66.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:04:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15663-PA 990 GM15663-PA 660..990 120..454 1615 95.5 Plus
Dsec\GM15663-PA 990 GM15663-PA 1..121 1..121 633 99.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:04:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25145-PA 276 GD25145-PA 33..220 217..420 739 83.8 Plus
Dsim\GD25145-PA 276 GD25145-PA 1..36 1..36 175 91.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:04:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20491-PA 1109 GJ20491-PA 737..1109 151..454 532 42 Plus
Dvir\GJ20491-PA 1109 GJ20491-PA 11..123 6..121 356 64.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:04:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19449-PA 881 GK19449-PA 519..881 136..454 651 48 Plus
Dwil\GK19449-PA 881 GK19449-PA 18..118 34..134 334 66 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:04:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13650-PA 1067 GE13650-PA 727..1067 120..454 1342 90.3 Plus
Dyak\GE13650-PA 1067 GE13650-PA 1..121 1..121 614 95.9 Plus

RH33260.hyp Sequence

Translation from 449 to 1813

> RH33260.hyp
MQFDPKTRCGGSVVSFTVMLLLIIGADFAAGRPDVRESPFALNLQPPLLQ
SDVTFSSGQGGGAGPKAIDSYGNPIDALRPIDTPDGRKVVSAQGVQFEIP
TYASGITEIRRPADDLLPPHIDNTPKDSSSSGSSSTTTFVNTTPSPLDAG
NPFDSATIPAWLRDFDYPDVGPGVPFDPDNFGTASASSTRNPTNPPRPPT
VPPVSSAFPSKVTLPLPGSSISSSSSEEPQLVLVPPADRAEAASGSDSQF
GPNPGQLTQPTSNSVTPFAARFEPSASSSSSQSVEPFPPSKVEYTKSDEG
KVISTPVTNNQRKTETVAPPASNTGKYTGGFGAPPGLLRPQSTNPSVSNS
GPNSNPRPGSDIYVAGNQHEFSSVLKANKARPTVNPGRYNGGFGAPTGVL
SPQAQAEPRPFQPINQRTEHREQSSGGNRRTESRFGGPPGILVPFDNVQR
TGGQ*

RH33260.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:42:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG11073-PB 454 CG11073-PB 1..454 1..454 2385 100 Plus
CG11073-PD 808 CG11073-PD 474..808 120..454 1765 99.7 Plus
CG11073-PC 896 CG11073-PC 562..896 120..454 1765 99.7 Plus
CG11073-PA 1056 CG11073-PA 722..1056 120..454 1765 99.7 Plus
CG11073-PE 307 CG11073-PE 108..307 256..454 981 93.5 Plus
CG11073-PC 896 CG11073-PC 1..169 1..169 646 78.3 Plus
CG11073-PA 1056 CG11073-PA 1..137 1..137 636 89.8 Plus
CG11073-PD 808 CG11073-PD 1..509 1..447 198 24 Plus