BDGP Sequence Production Resources |
Search the DGRC for RH33260
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 332 |
Well: | 60 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG11073-RB |
Protein status: | RH33260.pep: gold |
Sequenced Size: | 1944 |
Gene | Date | Evidence |
---|---|---|
CG11073 | 2009-07-02 | Manual selection by Sue Celniker |
1944 bp assembled on 2009-11-17
GenBank Submission: BT100295.1
> RH33260.complete ATTGAAAGCGCAGAATCCGTGAGCTACGGACGTGTTTCGCTCGAGCGCAT CGCGCATCTCCCAGATACGACCTACGATCTCCATCGCTCTTGCTCGCTCG CACCGCCGCCCTCCGCGCATAGCACCCTCTCGCTCGCGCACCGAAGTGAT CGTGATATCGTGCCGCGGATTTTATTCCGATTGAGAAAAGGCGGTGAAAA TATTACACATTATAGTTGTCGGCTTCGATTGCGACGCCTGCGATTTTGTC ATCGCGATCATTGTTGGCCGGATCGACGGCTCCTACGCGATATAATTGTA TTCCCGCCGATCTCGCTGCCATCCCCTTTGGGCAATGCCCAATTCCAAAT TGTTAATTGCGTGACAAATTCGAAAAGGGGTTAATATATAAAGAGAAATA ATACGAGCAGTAAGCCAAAACGCGAAGCTCCGTGCTCACCCACGAGATAA TGCAGTTCGATCCGAAGACACGATGCGGTGGCAGCGTGGTTAGCTTTACC GTTATGCTGCTGCTGATCATCGGCGCCGATTTCGCCGCTGGAAGGCCTGA TGTGCGCGAGTCGCCCTTCGCCCTCAATCTGCAGCCTCCGCTGCTGCAGT CGGACGTGACCTTCAGTTCAGGCCAGGGGGGTGGTGCCGGGCCGAAGGCC ATCGACAGCTACGGCAACCCCATCGACGCCCTGCGACCCATCGATACGCC CGACGGGCGCAAGGTGGTCAGCGCCCAGGGCGTTCAGTTTGAGATACCCA CATACGCCTCGGGAATCACGGAGATCCGGCGGCCGGCCGATGATCTTCTG CCGCCACACATTGATAACACGCCGAAGGATTCGAGCAGCAGTGGCAGCAG CAGCACCACAACTTTCGTCAACACCACTCCAAGCCCGTTGGATGCTGGCA ACCCATTCGATTCGGCCACCATTCCTGCCTGGCTGCGTGACTTCGACTAT CCGGATGTCGGACCGGGCGTGCCCTTTGACCCGGACAACTTTGGAACAGC GTCGGCCAGCAGCACCCGTAACCCCACCAATCCGCCACGTCCCCCCACCG TCCCGCCCGTTTCCTCCGCTTTTCCATCCAAAGTCACGCTTCCGCTTCCA GGCAGCAGCATCAGTAGCAGTAGCAGTGAGGAACCACAGCTGGTACTCGT TCCGCCCGCTGACCGCGCGGAGGCCGCTTCTGGTTCCGACTCCCAATTCG GCCCCAATCCTGGACAACTGACCCAACCCACTTCCAACTCTGTCACGCCT TTTGCAGCCCGCTTCGAGCCATCGGCCAGCAGCTCCAGCTCCCAGAGCGT TGAACCCTTCCCGCCCAGCAAGGTGGAGTACACCAAGAGCGACGAGGGCA AGGTCATCAGCACGCCGGTCACCAACAATCAGCGAAAAACGGAGACTGTT GCACCTCCAGCTAGCAACACCGGGAAGTACACGGGAGGATTTGGTGCACC GCCTGGCCTACTGCGCCCACAGTCAACCAATCCCTCGGTCTCCAATTCGG GACCCAATTCCAATCCGAGACCCGGCTCCGACATCTATGTGGCTGGCAAC CAACACGAGTTCAGCAGTGTTTTGAAGGCGAACAAGGCACGACCCACCGT GAATCCGGGTCGCTACAACGGCGGATTCGGGGCGCCCACGGGAGTTCTTT CGCCTCAAGCGCAGGCGGAGCCACGTCCCTTCCAGCCAATTAACCAGCGA ACGGAACACAGGGAACAGTCATCCGGTGGCAACAGGAGGACTGAGAGCCG TTTTGGTGGACCGCCTGGCATTCTCGTGCCCTTCGACAACGTGCAGCGAA CTGGGGGGCAGTAGAAGGCAGTCCAGGAGTTCGCAAATACTTTAAATTAT TTATAGCCCATGTACATGTACCTATGCTAGAGCTAAGTAAAGTAACTGAC CCGCGGGTCACCACAGTACTTGCACAACAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG11073-RB | 2238 | CG11073-RB | 197..2129 | 1..1933 | 9635 | 99.8 | Plus |
CG11073.a | 1904 | CG11073.a | 744..1865 | 812..1933 | 5580 | 99.8 | Plus |
CG11073-RA | 4044 | CG11073-RA | 2815..3935 | 813..1933 | 5575 | 99.8 | Plus |
CG11073-RA | 4044 | CG11073-RA | 197..1009 | 1..813 | 4065 | 100 | Plus |
CG11073.a | 1904 | CG11073.a | 197..747 | 1..551 | 2755 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 17978572..17979148 | 1389..813 | 2795 | 99 | Minus |
chr2R | 21145070 | chr2R | 17977952..17978489 | 1927..1390 | 2615 | 99.1 | Minus |
chr2R | 21145070 | chr2R | 17985403..17985950 | 549..1 | 2560 | 98.2 | Minus |
chr2R | 21145070 | chr2R | 17980954..17981218 | 813..549 | 1295 | 99.2 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 22092142..22092718 | 1389..813 | 2885 | 100 | Minus |
2R | 25286936 | 2R | 22098982..22099530 | 549..1 | 2745 | 100 | Minus |
2R | 25286936 | 2R | 22091516..22092059 | 1933..1390 | 2690 | 99.6 | Minus |
2R | 25286936 | 2R | 22094524..22094788 | 813..549 | 1325 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 22093341..22093917 | 1389..813 | 2885 | 100 | Minus |
2R | 25260384 | 2R | 22100181..22100729 | 549..1 | 2745 | 100 | Minus |
2R | 25260384 | 2R | 22092715..22093258 | 1933..1390 | 2690 | 99.6 | Minus |
2R | 25260384 | 2R | 22095723..22095987 | 813..549 | 1325 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 17977951..17978489 | 1390..1928 | 98 | <- | Minus |
chr2R | 17978572..17979147 | 814..1389 | 98 | <- | Minus |
chr2R | 17980954..17981217 | 550..813 | 99 | <- | Minus |
chr2R | 17985403..17985950 | 1..549 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11073-RA | 1..364 | 450..813 | 100 | -> | Plus |
CG11073-RA | 2171..3171 | 814..1814 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11073-RB | 1..1365 | 450..1814 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11073-RB | 1..1365 | 450..1814 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11073-RB | 1..1365 | 450..1814 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11073-RA | 197..1009 | 1..813 | 100 | -> | Plus |
CG11073-RA | 2816..3929 | 814..1928 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11073-RB | 197..2123 | 1..1928 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11073-RB | 5..1931 | 1..1928 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11073-RB | 5..1931 | 1..1928 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 22091521..22092059 | 1390..1928 | 99 | <- | Minus |
2R | 22092142..22092717 | 814..1389 | 100 | <- | Minus |
2R | 22094524..22094787 | 550..813 | 100 | <- | Minus |
2R | 22098982..22099530 | 1..549 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 22091521..22092059 | 1390..1928 | 99 | <- | Minus |
2R | 22092142..22092717 | 814..1389 | 100 | <- | Minus |
2R | 22094524..22094787 | 550..813 | 100 | <- | Minus |
2R | 22098982..22099530 | 1..549 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 22091521..22092059 | 1390..1928 | 99 | <- | Minus |
2R | 22092142..22092717 | 814..1389 | 100 | <- | Minus |
2R | 22094524..22094787 | 550..813 | 100 | <- | Minus |
2R | 22098982..22099530 | 1..549 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 17982029..17982292 | 550..813 | 100 | <- | Minus |
arm_2R | 17979026..17979564 | 1390..1928 | 99 | <- | Minus |
arm_2R | 17979647..17980222 | 814..1389 | 100 | <- | Minus |
arm_2R | 17986487..17987035 | 1..549 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 22095723..22095986 | 550..813 | 100 | <- | Minus |
2R | 22092720..22093258 | 1390..1928 | 99 | <- | Minus |
2R | 22093341..22093916 | 814..1389 | 100 | <- | Minus |
2R | 22100181..22100729 | 1..549 | 100 | Minus |
Translation from 449 to 1813
> RH33260.pep MQFDPKTRCGGSVVSFTVMLLLIIGADFAAGRPDVRESPFALNLQPPLLQ SDVTFSSGQGGGAGPKAIDSYGNPIDALRPIDTPDGRKVVSAQGVQFEIP TYASGITEIRRPADDLLPPHIDNTPKDSSSSGSSSTTTFVNTTPSPLDAG NPFDSATIPAWLRDFDYPDVGPGVPFDPDNFGTASASSTRNPTNPPRPPT VPPVSSAFPSKVTLPLPGSSISSSSSEEPQLVLVPPADRAEAASGSDSQF GPNPGQLTQPTSNSVTPFAARFEPSASSSSSQSVEPFPPSKVEYTKSDEG KVISTPVTNNQRKTETVAPPASNTGKYTGGFGAPPGLLRPQSTNPSVSNS GPNSNPRPGSDIYVAGNQHEFSSVLKANKARPTVNPGRYNGGFGAPTGVL SPQAQAEPRPFQPINQRTEHREQSSGGNRRTESRFGGPPGILVPFDNVQR TGGQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11592-PA | 1007 | GF11592-PA | 699..1007 | 142..454 | 779 | 62.7 | Plus |
Dana\GF11592-PA | 1007 | GF11592-PA | 1..120 | 1..127 | 438 | 72.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20719-PA | 1049 | GG20719-PA | 718..1049 | 120..454 | 1256 | 86.8 | Plus |
Dere\GG20719-PA | 1049 | GG20719-PA | 1..139 | 1..137 | 613 | 85.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21338-PA | 825 | GH21338-PA | 491..825 | 151..454 | 565 | 45.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG11073-PB | 454 | CG11073-PB | 1..454 | 1..454 | 2385 | 100 | Plus |
CG11073-PD | 808 | CG11073-PD | 474..808 | 120..454 | 1765 | 99.7 | Plus |
CG11073-PC | 896 | CG11073-PC | 562..896 | 120..454 | 1765 | 99.7 | Plus |
CG11073-PA | 1056 | CG11073-PA | 722..1056 | 120..454 | 1765 | 99.7 | Plus |
CG11073-PE | 307 | CG11073-PE | 108..307 | 256..454 | 981 | 93.5 | Plus |
CG11073-PE | 307 | CG11073-PE | 1..297 | 1..340 | 649 | 49.7 | Plus |
CG11073-PC | 896 | CG11073-PC | 1..169 | 1..169 | 646 | 78.3 | Plus |
CG11073-PA | 1056 | CG11073-PA | 1..137 | 1..137 | 636 | 89.8 | Plus |
CG11073-PD | 808 | CG11073-PD | 1..509 | 1..447 | 198 | 24 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20755-PA | 909 | GI20755-PA | 32..124 | 27..122 | 359 | 74.2 | Plus |
Dmoj\GI20755-PA | 909 | GI20755-PA | 552..582 | 151..181 | 156 | 80.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11840-PA | 556 | GL11840-PA | 260..556 | 155..454 | 362 | 36.5 | Plus |
Dper\GL11840-PA | 556 | GL11840-PA | 89..174 | 34..121 | 328 | 73.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10744-PB | 1109 | GA10744-PB | 749..1109 | 142..454 | 640 | 49.9 | Plus |
Dpse\GA10744-PB | 1109 | GA10744-PB | 5..118 | 8..121 | 381 | 66.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15663-PA | 990 | GM15663-PA | 660..990 | 120..454 | 1615 | 95.5 | Plus |
Dsec\GM15663-PA | 990 | GM15663-PA | 1..121 | 1..121 | 633 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25145-PA | 276 | GD25145-PA | 33..220 | 217..420 | 739 | 83.8 | Plus |
Dsim\GD25145-PA | 276 | GD25145-PA | 1..36 | 1..36 | 175 | 91.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20491-PA | 1109 | GJ20491-PA | 737..1109 | 151..454 | 532 | 42 | Plus |
Dvir\GJ20491-PA | 1109 | GJ20491-PA | 11..123 | 6..121 | 356 | 64.4 | Plus |
Translation from 449 to 1813
> RH33260.hyp MQFDPKTRCGGSVVSFTVMLLLIIGADFAAGRPDVRESPFALNLQPPLLQ SDVTFSSGQGGGAGPKAIDSYGNPIDALRPIDTPDGRKVVSAQGVQFEIP TYASGITEIRRPADDLLPPHIDNTPKDSSSSGSSSTTTFVNTTPSPLDAG NPFDSATIPAWLRDFDYPDVGPGVPFDPDNFGTASASSTRNPTNPPRPPT VPPVSSAFPSKVTLPLPGSSISSSSSEEPQLVLVPPADRAEAASGSDSQF GPNPGQLTQPTSNSVTPFAARFEPSASSSSSQSVEPFPPSKVEYTKSDEG KVISTPVTNNQRKTETVAPPASNTGKYTGGFGAPPGLLRPQSTNPSVSNS GPNSNPRPGSDIYVAGNQHEFSSVLKANKARPTVNPGRYNGGFGAPTGVL SPQAQAEPRPFQPINQRTEHREQSSGGNRRTESRFGGPPGILVPFDNVQR TGGQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG11073-PB | 454 | CG11073-PB | 1..454 | 1..454 | 2385 | 100 | Plus |
CG11073-PD | 808 | CG11073-PD | 474..808 | 120..454 | 1765 | 99.7 | Plus |
CG11073-PC | 896 | CG11073-PC | 562..896 | 120..454 | 1765 | 99.7 | Plus |
CG11073-PA | 1056 | CG11073-PA | 722..1056 | 120..454 | 1765 | 99.7 | Plus |
CG11073-PE | 307 | CG11073-PE | 108..307 | 256..454 | 981 | 93.5 | Plus |
CG11073-PC | 896 | CG11073-PC | 1..169 | 1..169 | 646 | 78.3 | Plus |
CG11073-PA | 1056 | CG11073-PA | 1..137 | 1..137 | 636 | 89.8 | Plus |
CG11073-PD | 808 | CG11073-PD | 1..509 | 1..447 | 198 | 24 | Plus |