Clone RH33377 Report

Search the DGRC for RH33377

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:333
Well:77
Vector:pFlc-1
Associated Gene/TranscriptCG10646-RA
Protein status:RH33377.pep: gold
Preliminary Size:1152
Sequenced Size:1408

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10646 2002-01-01 Sim4 clustering to Release 2
CG10646 2002-02-27 Blastp of sequenced clone
CG10646 2003-01-01 Sim4 clustering to Release 3
CG10646 2008-04-29 Release 5.5 accounting
CG10646 2008-08-15 Release 5.9 accounting
CG10646 2008-12-18 5.12 accounting

Clone Sequence Records

RH33377.complete Sequence

1408 bp (1408 high quality bases) assembled on 2002-02-27

GenBank Submission: AY089665

> RH33377.complete
GACTTTTAGGTACGCCGTTTAGTGTACGTAAGTTGCGTACCTAGATATCC
AGCGAAATCAAAACATTGAGTAAATCGTGGAAAATGGATGAAAATAGCTT
AATCTACGGACTCGAACTGCAGGCGCGGGCTTTAACACCTCAGTACGGAG
AGAGCAACGATGTGTGCTTCTTCATAGCCACCAACTCCTTGAAGCCCACC
AATCAGGTTCACTTAATCCAGTACGAGGAGGAGCAGGGATCCGTGCAATC
AAAGGTCTTTGAGCACGCCCTGGGTGAAGTTTGGAAACTAAATAGTTGTC
CGCGTAATCCTCGCCTGCTGGCCTCCGTCTACAATGTACAAAAGGGAGCA
CAAGTGCTGACCAAAGCGGCTCTGTTTACGCTGCCCGAGAATCTCAATCC
CGATCCGGAGCAGCTGAAGTCAGAGTACCTGCCGTGGGAGCAGGTTGAGG
TCCTGGATACCGAAGCACTGGGCGAACGTGTGAAGACCATCGAATTCCAT
CCCAACCAGGACACACTCGCCTGTGTGGTGGACAACAAGGTGGCTGTGAT
GCAGCGGGCCGAGTCCTCTACTCGCGTGGTGGCCGAGGTGCCGGCCAGTG
GTTCATCCAGTGGATCTGCAAAGCACACACAGCATTTCACCAGCGGCAAG
TGGTCGCATCATCATCAGGGCCACCAGTTTCTCACCCTCCAGGATGGCAA
TCTAAGTGCCTACGATGTGCGGGATACACAGCATTGTGCCTGGAGCATCA
ACGATGCGCATGGTCAAATGGTCCGTGACCTGGACTGCAATCCCAACAAG
CAGTGCCATTTGGTCACCGGCGGTGACGATGGCTACTTGAGGATCTGGGA
CTGTCGCATGCCCAAGGCTCCCGTTTTCGAGCGCTCCGATCATTCGCATT
GGGTCTGGTGCGTTCGCTTCAACACATTCCACGACCAACTGATCCTCTCC
AGCTCCAGTGACTGCAAGGTGCTGCTCACGTGTGCGGGATCGGTTAGTTC
GGAGACGCAGGTTCAGGCTGGACTAGATGAGTCCAACTTCAGTGGTGCCG
ATGCCGAGGAGAGGCACAAACTCTTGCCAGATGGTCTGCTGCAGACCTTC
GATCAGCACGAGGACTCCGTTTACTGCGCGGAGTGGAGCAATGTGGATCC
GTGGATCTTTGCTTCGCTCAGCTACGATGGTCGCGTCATAATCTCAAAGG
TGCCCAAGCAGTACAAGTACCAGATTATATTTTAAGCCATTAGTTTCTTA
AATTATTACGCATATTTCATTTAAATCTAACTAAACAAATTGTGTCCTTG
TATGTAGTAGCAGGTTATACAAATATTAAACCAATAAGTTATTATATGAA
GATAAATATATCGAGGGACTAAAGCTAATTAGGCTTAACCTGTAAAAAAA
AAAAAAAA

RH33377.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:22:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG10646-RA 1430 CG10646-RA 38..1430 2..1394 6950 99.9 Plus
nc_12253.a 302 nc_12253.a 1..245 559..315 1225 100 Minus
CG10681.a 1027 CG10681.a 846..1027 1394..1213 895 99.4 Minus
nc_12253.a 302 nc_12253.a 238..302 124..60 310 98.4 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:34:44
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 12493073..12494213 1393..253 5570 99.2 Minus
chr3L 24539361 chr3L 12494261..12494515 256..2 1260 99.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:27:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:34:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12502466..12503607 1394..253 5695 99.9 Minus
3L 28110227 3L 12503655..12503909 256..2 1275 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:52:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 12495566..12496707 1394..253 5695 99.9 Minus
3L 28103327 3L 12496755..12497009 256..2 1275 100 Minus
Blast to na_te.dros performed on 2019-03-15 14:34:43 has no hits.

RH33377.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:35:43 Download gff for RH33377.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 12493073..12494211 255..1393 99 <- Minus
chr3L 12494263..12494515 1..254 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:45:03 Download gff for RH33377.complete
Subject Subject Range Query Range Percent Splice Strand
CG10646-RA 1..1152 84..1235 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:32:21 Download gff for RH33377.complete
Subject Subject Range Query Range Percent Splice Strand
CG10646-RA 1..1152 84..1235 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:35:33 Download gff for RH33377.complete
Subject Subject Range Query Range Percent Splice Strand
CG10646-RA 1..1152 84..1235 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:05:17 Download gff for RH33377.complete
Subject Subject Range Query Range Percent Splice Strand
CG10646-RA 1..1152 84..1235 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:03:27 Download gff for RH33377.complete
Subject Subject Range Query Range Percent Splice Strand
CG10646-RA 1..1152 84..1235 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:58:18 Download gff for RH33377.complete
Subject Subject Range Query Range Percent Splice Strand
CG10646-RA 1..1392 2..1393 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:32:21 Download gff for RH33377.complete
Subject Subject Range Query Range Percent Splice Strand
CG10646-RA 1..1392 2..1393 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:35:33 Download gff for RH33377.complete
Subject Subject Range Query Range Percent Splice Strand
CG10646-RA 1..1377 17..1393 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:05:17 Download gff for RH33377.complete
Subject Subject Range Query Range Percent Splice Strand
CG10646-RA 1..1392 2..1393 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:03:27 Download gff for RH33377.complete
Subject Subject Range Query Range Percent Splice Strand
CG10646-RA 1..1377 17..1393 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:35:43 Download gff for RH33377.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12502467..12503605 255..1393 99 <- Minus
3L 12503657..12503909 1..254 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:35:43 Download gff for RH33377.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12502467..12503605 255..1393 99 <- Minus
3L 12503657..12503909 1..254 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:35:43 Download gff for RH33377.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12502467..12503605 255..1393 99 <- Minus
3L 12503657..12503909 1..254 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:35:33 Download gff for RH33377.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12495567..12496705 255..1393 99 <- Minus
arm_3L 12496757..12497009 1..254 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:39:04 Download gff for RH33377.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12495567..12496705 255..1393 99 <- Minus
3L 12496757..12497009 1..254 99   Minus

RH33377.pep Sequence

Translation from 83 to 1234

> RH33377.pep
MDENSLIYGLELQARALTPQYGESNDVCFFIATNSLKPTNQVHLIQYEEE
QGSVQSKVFEHALGEVWKLNSCPRNPRLLASVYNVQKGAQVLTKAALFTL
PENLNPDPEQLKSEYLPWEQVEVLDTEALGERVKTIEFHPNQDTLACVVD
NKVAVMQRAESSTRVVAEVPASGSSSGSAKHTQHFTSGKWSHHHQGHQFL
TLQDGNLSAYDVRDTQHCAWSINDAHGQMVRDLDCNPNKQCHLVTGGDDG
YLRIWDCRMPKAPVFERSDHSHWVWCVRFNTFHDQLILSSSSDCKVLLTC
AGSVSSETQVQAGLDESNFSGADAEERHKLLPDGLLQTFDQHEDSVYCAE
WSNVDPWIFASLSYDGRVIISKVPKQYKYQIIF*

RH33377.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:42:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24012-PA 382 GF24012-PA 1..382 1..383 1872 90.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:42:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13821-PA 383 GG13821-PA 1..383 1..383 2028 97.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:42:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16847-PA 383 GH16847-PA 1..383 1..383 1607 79.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:10:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG10646-PA 383 CG10646-PA 1..383 1..383 2057 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:42:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13067-PA 382 GI13067-PA 1..382 1..383 1614 78.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:42:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24948-PA 383 GL24948-PA 1..383 1..383 1794 86.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:42:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10465-PA 383 GA10465-PA 1..383 1..383 1798 87 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:42:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24649-PA 383 GM24649-PA 1..383 1..383 2044 98.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:42:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17577-PA 206 GD17577-PA 1..203 1..203 1073 99 Plus
Dsim\GD12713-PA 107 GD12713-PA 10..107 286..383 499 95.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:42:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13815-PA 380 GJ13815-PA 1..380 1..383 1621 79.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:42:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12621-PA 382 GK12621-PA 1..382 1..383 1550 75.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:42:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20115-PA 380 GE20115-PA 1..380 1..383 1985 95.8 Plus

RH33377.hyp Sequence

Translation from 83 to 1234

> RH33377.hyp
MDENSLIYGLELQARALTPQYGESNDVCFFIATNSLKPTNQVHLIQYEEE
QGSVQSKVFEHALGEVWKLNSCPRNPRLLASVYNVQKGAQVLTKAALFTL
PENLNPDPEQLKSEYLPWEQVEVLDTEALGERVKTIEFHPNQDTLACVVD
NKVAVMQRAESSTRVVAEVPASGSSSGSAKHTQHFTSGKWSHHHQGHQFL
TLQDGNLSAYDVRDTQHCAWSINDAHGQMVRDLDCNPNKQCHLVTGGDDG
YLRIWDCRMPKAPVFERSDHSHWVWCVRFNTFHDQLILSSSSDCKVLLTC
AGSVSSETQVQAGLDESNFSGADAEERHKLLPDGLLQTFDQHEDSVYCAE
WSNVDPWIFASLSYDGRVIISKVPKQYKYQIIF*

RH33377.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:21:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG10646-PA 383 CG10646-PA 1..383 1..383 2057 100 Plus