Clone RH33703 Report

Search the DGRC for RH33703

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:337
Well:3
Vector:pFlc-1
Associated Gene/TranscriptHex-C-RA
Protein status:RH33703.pep: gold
Preliminary Size:1445
Sequenced Size:1592

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8094 2001-12-17 Blastp of sequenced clone
CG8094 2002-01-01 Sim4 clustering to Release 2
CG8094 2003-01-01 Sim4 clustering to Release 3
Hex-C 2008-04-29 Release 5.5 accounting
Hex-C 2008-08-15 Release 5.9 accounting
Hex-C 2008-12-18 5.12 accounting

Clone Sequence Records

RH33703.complete Sequence

1592 bp (1592 high quality bases) assembled on 2001-12-17

GenBank Submission: AY071719

> RH33703.complete
GGTTTCCAAGGCGCACTGCATCTCAACGCCTGGCTCTTATCAGGCACCCA
GGGCAACTCCAAATCGCCGTGGGCTCGCCAGGCGCCTGGTTAGTCGTTAC
TCATCGTTCGAGGCGGTTACAACTAAGGCAGATAGATTAGCCAAGCAAAA
TGCTGGACGCGGAGGTGCGAGAACTTATGCAACCCTTTGTGTTGAGTGAT
TACCAGGTGCAGGAAGTGTACAGTCGCTTTTGCCTGGAAGTGGCCCGTGG
ACTTAAGCGGTCCACGCATCCACAGGCCAACGTCAAGTGTTTTCCCACGT
ACGTGCAGGATCTGCCCACGGGCGACGAGATGGGCAAGTACCTGGCCCTG
GATCTCGGCGGTACCAACTTCCGAGTACTGCTCGTCTCGCTGAAAGGTCA
CCACGACGCCACGGTGGATTCTCAGATCTATGCCGTGCCAAAGGACCTGA
TGGTGGGGCCCGGTGTGGACCTATTCGATCACATTGCGGGCTGCCTGGCC
AAATTTGTGGAGAAACACGACATGAAGACCGCATATCTGCCACTGGGCTT
CACTTTTTCCTTCCCTTGCGTGCAACTAGGCCTTAAGGAGGGCATCCTGG
TACGCTGGACTAAGGGATTCGATTGTGCTGGGGTTGAGGGCGAGGATGTG
GGCCGCATGCTGCACGAGGCCATTCAGCGGCGCGGAGATGCCGACATTGC
CGTGGTGGCTATACTCAACGATACCACTGGCACCTTGATGTCCTGCGCCC
ATCGTAATGCAGATTGCCGGGTGGGTGTCATTGTGGGAACTGGCTGCAAT
GCCTGCTACGTTGAAGATGTTGAGAATGTGGACCTATTGCGCGCAGACTT
TAAAAAAACGAAGCGGAGTGTGATTGTAAATGCTGAGTGGGGCGCCTTTG
GTGAGGGTGGTCAGTTGGACTTTGTGCGCACCGAATACGATCGCGAAGTT
GACGAAAAGTCTCTAAACCGATCGGAGCAGCTGTTCGAAAAGATGACGGC
GGGCATGTACTTGGGCAACCTGGTGCGCCTTGTGCTACTTCGTGCCCTCG
AGCGCAAGCTGATCTTTAAACAGAGCAGTCGACGTCCAGAATTCGCCAGC
GTGCTGCAGAGAAACGAAGAGGTTTTCGAGACGCGCTACATTTCGGAAAT
CGAGGACGACTCCTTCCCAGAGTTTGCCAGCACAAGGAAGATTGTGAAAA
ATCTGTTTGGTCTAGAGAAGGCCTCCGTGGAGGACTGCCAGACTCTGAGA
TACATCTGCGAGTGCGTAGCTAAGCGAGCGGCTACATTAGTAGCCATCGG
AGTCAGTGGGCTGGTGAACAGGACTTCCAACCGCCGCGTGATAGTCGGCA
TGGATGGCTCCGTCTACCGATACCATCCAAAGTTCGATGCCTACATGAGG
CAAACACTCCAAAAGCTGGTGAAAGCAGACAAGGAGTGGGACATCATGCT
CTCGGAGGACGGATCCGGACGTGGAGCTGCGCTGGTGGCCGCGGTGGCCA
GTAAAACAAAGTAGGAACTCACTACTATTGTAGCAATAATAGAAGGACTC
AGTGTAATAAAACAAATTTTAACTCACAAAAAAAAAAAAAAA

RH33703.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:35:52
Subject Length Description Subject Range Query Range Score Percent Strand
Hex-C-RA 1578 Hex-C-RA 1..1578 2..1579 7875 99.9 Plus
Hex-A.a 2520 Hex-A.a 719..835 267..383 210 78.6 Plus
Hex-A-RB 2520 Hex-A-RB 719..835 267..383 210 78.6 Plus
Hex-A.a 2520 Hex-A.a 1874..1927 1446..1499 150 85.1 Plus
Hex-A-RB 2520 Hex-A-RB 1874..1927 1446..1499 150 85.1 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:43:12
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 11106047..11107622 1577..2 7865 99.9 Minus
chrX 22417052 chrX 9478318..9478434 267..383 210 78.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:27:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:43:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15218835..15220412 1579..2 7875 99.9 Minus
X 23542271 X 9586603..9586719 267..383 210 78.6 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:03:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 15220034..15221611 1579..2 7875 99.9 Minus
X 23527363 X 9594701..9594817 267..383 210 78.6 Plus
X 23527363 X 9595856..9595909 1446..1499 150 85.1 Plus
Blast to na_te.dros performed 2019-03-15 16:43:10
Subject Length Description Subject Range Query Range Score Percent Strand
Quasimodo 7387 Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. 6266..6336 1500..1574 113 65.3 Plus
GATE 8507 GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). 8009..8045 1430..1466 113 78.4 Plus

RH33703.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:44:24 Download gff for RH33703.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 11106047..11107622 1..1577 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:45:06 Download gff for RH33703.complete
Subject Subject Range Query Range Percent Splice Strand
Hex-C-RA 1..1365 150..1514 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:58:40 Download gff for RH33703.complete
Subject Subject Range Query Range Percent Splice Strand
Hex-C-RA 1..1365 150..1514 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:08:36 Download gff for RH33703.complete
Subject Subject Range Query Range Percent Splice Strand
Hex-C-RA 1..1365 150..1514 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:23:26 Download gff for RH33703.complete
Subject Subject Range Query Range Percent Splice Strand
Hex-C-RA 1..1365 150..1514 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:47:25 Download gff for RH33703.complete
Subject Subject Range Query Range Percent Splice Strand
Hex-C-RA 1..1365 150..1514 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:23:55 Download gff for RH33703.complete
Subject Subject Range Query Range Percent Splice Strand
Hex-C-RA 1..1576 2..1577 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:58:40 Download gff for RH33703.complete
Subject Subject Range Query Range Percent Splice Strand
Hex-C-RA 1..1576 2..1577 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:08:36 Download gff for RH33703.complete
Subject Subject Range Query Range Percent Splice Strand
Hex-C-RA 1..1493 85..1577 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:23:26 Download gff for RH33703.complete
Subject Subject Range Query Range Percent Splice Strand
Hex-C-RA 1..1576 2..1577 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:47:25 Download gff for RH33703.complete
Subject Subject Range Query Range Percent Splice Strand
Hex-C-RA 1..1493 85..1577 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:44:24 Download gff for RH33703.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15218837..15220412 1..1577 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:44:24 Download gff for RH33703.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15218837..15220412 1..1577 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:44:24 Download gff for RH33703.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15218837..15220412 1..1577 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:08:36 Download gff for RH33703.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11106342..11107917 1..1577 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:58:29 Download gff for RH33703.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15220036..15221611 1..1577 99   Minus

RH33703.pep Sequence

Translation from 149 to 1513

> RH33703.pep
MLDAEVRELMQPFVLSDYQVQEVYSRFCLEVARGLKRSTHPQANVKCFPT
YVQDLPTGDEMGKYLALDLGGTNFRVLLVSLKGHHDATVDSQIYAVPKDL
MVGPGVDLFDHIAGCLAKFVEKHDMKTAYLPLGFTFSFPCVQLGLKEGIL
VRWTKGFDCAGVEGEDVGRMLHEAIQRRGDADIAVVAILNDTTGTLMSCA
HRNADCRVGVIVGTGCNACYVEDVENVDLLRADFKKTKRSVIVNAEWGAF
GEGGQLDFVRTEYDREVDEKSLNRSEQLFEKMTAGMYLGNLVRLVLLRAL
ERKLIFKQSSRRPEFASVLQRNEEVFETRYISEIEDDSFPEFASTRKIVK
NLFGLEKASVEDCQTLRYICECVAKRAATLVAIGVSGLVNRTSNRRVIVG
MDGSVYRYHPKFDAYMRQTLQKLVKADKEWDIMLSEDGSGRGAALVAAVA
SKTK*

RH33703.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:06:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12622-PA 454 GF12622-PA 1..454 1..454 2206 91.4 Plus
Dana\GF22320-PA 539 GF22320-PA 92..531 6..452 1284 54.4 Plus
Dana\GF20727-PA 447 GF20727-PA 1..447 1..454 1057 46.7 Plus
Dana\GF20735-PA 469 GF20735-PA 17..457 5..454 727 33.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:06:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22367-PA 454 GG22367-PA 1..454 1..454 2387 97.8 Plus
Dere\GG18317-PA 539 GG18317-PA 93..531 6..452 1278 54.1 Plus
Dere\GG11478-PA 453 GG11478-PA 4..450 1..454 1050 45.4 Plus
Dere\GG11476-PA 465 GG11476-PA 13..453 5..454 706 32.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:06:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21465-PA 454 GH21465-PA 1..454 1..454 2006 78.9 Plus
Dgri\GH12375-PA 538 GH12375-PA 93..531 6..452 1287 55 Plus
Dgri\GH19419-PA 449 GH19419-PA 9..449 5..452 1163 50.2 Plus
Dgri\GH19418-PA 459 GH19418-PA 12..448 5..450 745 33.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:21:55
Subject Length Description Subject Range Query Range Score Percent Strand
Hex-C-PA 454 CG8094-PA 1..454 1..454 2344 100 Plus
Hex-A-PC 448 CG3001-PC 2..440 6..452 1243 54.4 Plus
Hex-A-PB 448 CG3001-PB 2..440 6..452 1243 54.4 Plus
Hex-A-PA 541 CG3001-PA 95..533 6..452 1243 54.4 Plus
Hex-t2-PA 486 CG32849-PA 37..483 1..454 1046 46.5 Plus
Hex-t1-PA 465 CG33102-PA 13..453 5..454 696 32.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:06:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19942-PA 454 GI19942-PA 1..453 1..453 1956 80.4 Plus
Dmoj\GI14754-PA 547 GI14754-PA 102..540 6..452 1275 54.7 Plus
Dmoj\GI22624-PA 451 GI22624-PA 13..450 8..452 1107 48.3 Plus
Dmoj\GI22622-PA 458 GI22622-PA 12..452 5..454 761 34.7 Plus
Dmoj\GI22621-PA 454 GI22621-PA 12..449 5..451 750 35.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:06:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11018-PA 454 GL11018-PA 1..454 1..454 2082 82.6 Plus
Dper\GL21847-PA 456 GL21847-PA 11..453 5..454 1112 49.6 Plus
Dper\GL21996-PA 466 GL21996-PA 14..454 5..454 676 30.4 Plus
Dper\GL15877-PA 397 GL15877-PA 223..389 279..452 411 48.9 Plus
Dper\GL15877-PA 397 GL15877-PA 103..221 6..124 393 58.8 Plus
Dper\GL21460-PA 66 GL21460-PA 6..63 397..454 141 43.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:06:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20820-PA 454 GA20820-PA 1..454 1..454 2082 82.6 Plus
Dpse\GA15574-PA 549 GA15574-PA 103..541 6..452 1283 55.3 Plus
Dpse\GA26424-PA 456 GA26424-PA 11..453 5..454 1112 49.6 Plus
Dpse\GA17282-PA 466 GA17282-PA 14..454 5..454 665 29.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:06:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20151-PA 454 GM20151-PA 1..454 1..454 2403 98.9 Plus
Dsec\GM10321-PA 453 GM10321-PA 4..450 1..454 1069 46.1 Plus
Dsec\GM11376-PA 388 GM11376-PA 95..305 6..216 705 61.1 Plus
Dsec\GM10320-PA 465 GM10320-PA 16..453 5..454 695 32.7 Plus
Dsec\GM11377-PA 155 GM11377-PA 21..147 325..452 345 52.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:06:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25630-PA 454 GD25630-PA 1..454 1..454 2415 99.6 Plus
Dsim\Hex-t2-PA 453 GD21282-PA 4..450 1..454 1073 46.3 Plus
Dsim\Hex-t1-PA 400 GD21281-PA 16..233 5..225 375 35.3 Plus
Dsim\GD24777-PA 69 GD24777-PA 6..61 397..452 184 62.5 Plus
Dsim\Hex-t1-PA 400 GD21281-PA 264..388 331..454 178 32.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:06:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15111-PA 454 GJ15111-PA 1..454 1..454 1958 79.5 Plus
Dvir\GJ19157-PA 561 GJ19157-PA 116..554 6..452 1281 54.2 Plus
Dvir\GJ23870-PA 450 GJ23870-PA 10..450 5..452 1124 49.1 Plus
Dvir\GJ23866-PA 451 GJ23866-PA 10..449 5..451 1069 45.9 Plus
Dvir\GJ23869-PA 458 GJ23869-PA 11..448 5..451 741 33.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:06:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21542-PA 454 GK21542-PA 1..454 1..454 1985 79.5 Plus
Dwil\GK16160-PA 535 GK16160-PA 90..528 6..452 1277 54.1 Plus
Dwil\GK19144-PA 471 GK19144-PA 21..467 5..454 1101 48.9 Plus
Dwil\GK18967-PA 460 GK18967-PA 9..439 5..442 1080 47.9 Plus
Dwil\GK13969-PA 468 GK13969-PA 13..449 5..448 747 33.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:06:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Hex-C-PA 454 GE12255-PA 1..454 1..454 2392 98.5 Plus
Dyak\Hex-A-PA 546 GE17799-PA 100..538 6..452 1282 54.4 Plus
Dyak\Hex-t2-PA 453 GE23669-PA 4..450 1..454 1084 46.5 Plus
Dyak\Hex-t1-PA 465 GE23668-PA 38..453 30..454 711 34.1 Plus

RH33703.hyp Sequence

Translation from 149 to 1513

> RH33703.hyp
MLDAEVRELMQPFVLSDYQVQEVYSRFCLEVARGLKRSTHPQANVKCFPT
YVQDLPTGDEMGKYLALDLGGTNFRVLLVSLKGHHDATVDSQIYAVPKDL
MVGPGVDLFDHIAGCLAKFVEKHDMKTAYLPLGFTFSFPCVQLGLKEGIL
VRWTKGFDCAGVEGEDVGRMLHEAIQRRGDADIAVVAILNDTTGTLMSCA
HRNADCRVGVIVGTGCNACYVEDVENVDLLRADFKKTKRSVIVNAEWGAF
GEGGQLDFVRTEYDREVDEKSLNRSEQLFEKMTAGMYLGNLVRLVLLRAL
ERKLIFKQSSRRPEFASVLQRNEEVFETRYISEIEDDSFPEFASTRKIVK
NLFGLEKASVEDCQTLRYICECVAKRAATLVAIGVSGLVNRTSNRRVIVG
MDGSVYRYHPKFDAYMRQTLQKLVKADKEWDIMLSEDGSGRGAALVAAVA
SKTK*

RH33703.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:32:08
Subject Length Description Subject Range Query Range Score Percent Strand
Hex-C-PA 454 CG8094-PA 1..454 1..454 2344 100 Plus
Hex-A-PC 448 CG3001-PC 2..440 6..452 1243 54.4 Plus
Hex-A-PB 448 CG3001-PB 2..440 6..452 1243 54.4 Plus
Hex-A-PA 541 CG3001-PA 95..533 6..452 1243 54.4 Plus
Hex-t2-PA 486 CG32849-PA 37..483 1..454 1046 46.5 Plus