RH33996.complete Sequence
2586 bp (2586 high quality bases) assembled on 2002-08-19
GenBank Submission: BT001810
> RH33996.complete
GTTTCCGCTTCACACTTCGCAAGTGGCGGATCGCAGGGCCGGGGATTCCG
GAGTCCGGACTCCCAGATGCGGTTTATGTGACATGCGGGCCAGGGAAACT
CAAGAAACTAAAGAAGCGGCAGCGGCAGCAGGCACTAAACAAACGAATGC
TGGCAGGTGAGTGGCAGCAGAGGTGGAGTTTCAGGGGGTTAAAGGGGGGC
TTCTCAGAGGCCATCAGGGGGTTTCCGGGGACTCCAGGGGACAGGGTGTG
GCTGGCTGGTACCAGAAGTCATACAAACGCAAGACAAAACGAGGCGACAG
ACAATACAAGACTTCGAACTTGTCATACAAAACGCTGGCGCGACAATCAA
TGGAATTTATGGTCGCAGCAGGTTCAGTGCCAGTGCCAAACCCAAGCCGA
ATCCCAATCCCAAGCCCTCAGACAGAATCCAACCCAGGCCCAAGTGAAAA
CCATTCCCAAAGCTGCCCGGACTGACTGACATGTGCACTTGCAGAAATGT
CCTTAACATGTCCCAGTATTTTCAGCACAAGTACTTATAGGACTTAACTT
CATATTTCTCTATCCTAAAAACGTTTAACCACATTTCTAGCTCCATATCA
AATGTCATTAAATTGCTTACTCTCTTTTTCGGACAGAGAAATTCTTTTGT
GTGTCGAAAATATTTCTTGAAGTGCTAACTTGTCTTAGTGTACTTAAGCA
TTTTTAACGCCATTTGATGCCTTTTCACACATTCGACAAAGCGGAGAACA
AACACCACCAGAACCCCAGACCTTAACCGAACCGAAAAAAAATAAAACTC
AAGGAACACTTAGTCAGCCCATCATCGTCCTTCGTCCTGCCCCTCCCCAA
CCACCAGCAGGGCTCATCCTTTTTACTGCCGTTTGGGATTCAGGAGCAGG
ATTCAGTACTGTATTATGCGGCTTGTGTTTACACTAACAGACCCAGAGTC
CTGAAAATGTATAGAAAGGGGAGGAGCCCAGCTACTGTATTGAATTTCAC
GCATCATTTGGCCAAGGTTCATTCGGTTCTTGCTTTTGGTTTTAGGTTTT
CGGACCCCAGGGCGTGGGTGCCACTTTCTGACTCTGCGGTTAGCTTAAAA
TTAAAACAAATATCGGAAAACAGGCAAGTGGTGTTGCGAAGGTGTTGGAG
TCGGCATTTAATTTCAGACAGGTGGAAGAATTTCGAGTTGGCCGAGGAAA
TGTAATATGCTCTGCGCGCCCATTTAGCCAAGGAGGAGCTCTTTTCTGTT
GTGGTTGTCCAAAGTGAAGTGAAGTGCTAGTGGGGGAAATATGCCAGGAA
TGTGTTGGCTAAAGGGTTCGGAAATTCGGGGAAATTGAGGGTTGCCAGCG
AGTGTGTTGAAAGCGGCATTCCAATGTGTAGGATATCAATAGGTAGTCGC
AAGTTAACGAAACTGAAACAGGATAGAGGGGAGACCTAAAACTAATTTGC
GATGTTTGTAGGAACTCGACTACTGGCAACGCAATTAAAGCATAGCTTGG
ATTTGAGAGTATAACAAAAAGGAAGACAAAGTTGAGACTACATGTACAAC
ATGTAAATTAAGCCTTGTAAAATAGAAAAATTTTCATAGTAAGCCCTTTT
AATGAATGCTTTTAAATGTTTGTTTCTACTAATGATTCCAGTGCTTCGCT
TAATTGAAACCGCTTTTATAATTAAAACTTTAGTTGGCTGTATAACCGGA
GAACACAATTCCAATCCCAGGAACAACCGTGAAACCGCAAAACATATATT
GTGTAATTCCGGACAAAGCGTAAAACAGAAAATACAATATATAAACCTGA
ATAAATTTATTTTCGCCGCCATTGGTCTGCCCCAATGCTGATTAATGTGG
ATTGCCCGACAAATGTGTGCACATTAGCATTAAAATATATGTACATCTAT
GGATGCTTCACTCGTTTTGTGTCCAACTTTTATTAGACCAATTAAATTGC
GGTTGGCACTGAAGAGTTGAAAAGCTACGAATATATAGAAAACTTCGATG
TCTCCCCTTTGTCTGCGTTGCCATTTAATGTGCAGCAATTTTCACCCAAC
AAAGGCAGTCAATTAGGGGGGTTCCCCACCCCTGATAAAAGACAATACTA
TTGTTGTTCTAGCCGGCGAACTAAGACATCATCATATGATAGATATTTTA
GTATCGAAGAGAGAGGGGCTACTAATTAGCCATCATCAGCAGCGGCGGCT
ACACAATTTCCACCATCAAACAACAAAACACTAAACTGCACTGGCCAGTT
AACCGCAGGTACATGAGGGTTTTTGGGTATTTCGGGCCTGTGTTCTTGTT
ATTTTTTTCTTCTTCTGTTTTTTGGGAAGCGTTAGTAACTAAATTAGCGG
CCTCTGTTATTTTTTTTTTCAGTTTTGTTCCCTCTTTGTGTGGTGTTTTT
TCGGGTTTCAGCCGCCAGACTGCAGCCACAAATTATTGGGCCCAGTGTTT
TAGTTGTGTTGGCTCCTCTTTGCTTTGTTGAGTCGACTGCTGTCTGTTGC
CTAATTTCCAGTTGCATTTGCCTGGCTAATACAGACATCTCACTAAAGAT
GGCAGGGGTGAAAAGAAAACCCAAAAAAAAAAAAAA
RH33996.complete Blast Records
Blast to MB8.fasta performed on 2010-07-15 18:42:52 has no hits.
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:26:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 6334956..6337527 | 2572..1 | 12540 | 99.3 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:27:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:26:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6342454..6345038 | 2585..1 | 12895 | 99.9 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:16:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 6335554..6338138 | 2585..1 | 12895 | 99.9 | Minus |
Blast to na_te.dros performed 2019-03-15 20:26:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
McClintock | 6450 | McClintock McCLINTOCK 6450bp | 1146..1228 | 1693..1607 | 119 | 63.2 | Minus |
RH33996.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:27:19 Download gff for
RH33996.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 6334956..6337527 | 1..2572 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 18:07:02 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 18:07:02 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:27:19 Download gff for
RH33996.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6342467..6345038 | 1..2572 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:27:19 Download gff for
RH33996.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6342467..6345038 | 1..2572 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:27:19 Download gff for
RH33996.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6342467..6345038 | 1..2572 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:07:42 Download gff for
RH33996.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6335567..6338138 | 1..2572 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:07:42 Download gff for
RH33996.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6335567..6338138 | 1..2572 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:07:42 Download gff for
RH33996.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6335567..6338138 | 1..2572 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:39:06 Download gff for
RH33996.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6335567..6338138 | 1..2572 | 99 | | Minus |
RH33996.hyp Sequence
Translation from 2 to 478
> RH33996.hyp
FRFTLRKWRIAGPGIPESGLPDAVYVTCGPGKLKKLKKRQRQQALNKRML
AGEWQQRWSFRGLKGGFSEAIRGFPGTPGDRVWLAGTRSHTNARQNEATD
NTRLRTCHTKRWRDNQWNLWSQQVQCQCQTQAESQSQALRQNPTQAQVKT
IPKAARTD*
Sequence RH33996.hyp has no blast hits.
RH33996.pep Sequence
Translation from 146 to 478
> RH33996.pep
MLAGEWQQRWSFRGLKGGFSEAIRGFPGTPGDRVWLAGTRSHTNARQNEA
TDNTRLRTCHTKRWRDNQWNLWSQQVQCQCQTQAESQSQALRQNPTQAQV
KTIPKAARTD*
Sequence RH33996.pep has no blast hits.