Clone RH33996 Report

Search the DGRC for RH33996

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:339
Well:96
Vector:pFlc-1
Associated Gene/TranscriptCG32399-RA
Protein status:RH33996.pep: validated full length
Sequenced Size:2586

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32399 2002-08-19 Blastp of sequenced clone
CG32399 2003-01-01 Sim4 clustering to Release 3

Clone Sequence Records

RH33996.complete Sequence

2586 bp (2586 high quality bases) assembled on 2002-08-19

GenBank Submission: BT001810

> RH33996.complete
GTTTCCGCTTCACACTTCGCAAGTGGCGGATCGCAGGGCCGGGGATTCCG
GAGTCCGGACTCCCAGATGCGGTTTATGTGACATGCGGGCCAGGGAAACT
CAAGAAACTAAAGAAGCGGCAGCGGCAGCAGGCACTAAACAAACGAATGC
TGGCAGGTGAGTGGCAGCAGAGGTGGAGTTTCAGGGGGTTAAAGGGGGGC
TTCTCAGAGGCCATCAGGGGGTTTCCGGGGACTCCAGGGGACAGGGTGTG
GCTGGCTGGTACCAGAAGTCATACAAACGCAAGACAAAACGAGGCGACAG
ACAATACAAGACTTCGAACTTGTCATACAAAACGCTGGCGCGACAATCAA
TGGAATTTATGGTCGCAGCAGGTTCAGTGCCAGTGCCAAACCCAAGCCGA
ATCCCAATCCCAAGCCCTCAGACAGAATCCAACCCAGGCCCAAGTGAAAA
CCATTCCCAAAGCTGCCCGGACTGACTGACATGTGCACTTGCAGAAATGT
CCTTAACATGTCCCAGTATTTTCAGCACAAGTACTTATAGGACTTAACTT
CATATTTCTCTATCCTAAAAACGTTTAACCACATTTCTAGCTCCATATCA
AATGTCATTAAATTGCTTACTCTCTTTTTCGGACAGAGAAATTCTTTTGT
GTGTCGAAAATATTTCTTGAAGTGCTAACTTGTCTTAGTGTACTTAAGCA
TTTTTAACGCCATTTGATGCCTTTTCACACATTCGACAAAGCGGAGAACA
AACACCACCAGAACCCCAGACCTTAACCGAACCGAAAAAAAATAAAACTC
AAGGAACACTTAGTCAGCCCATCATCGTCCTTCGTCCTGCCCCTCCCCAA
CCACCAGCAGGGCTCATCCTTTTTACTGCCGTTTGGGATTCAGGAGCAGG
ATTCAGTACTGTATTATGCGGCTTGTGTTTACACTAACAGACCCAGAGTC
CTGAAAATGTATAGAAAGGGGAGGAGCCCAGCTACTGTATTGAATTTCAC
GCATCATTTGGCCAAGGTTCATTCGGTTCTTGCTTTTGGTTTTAGGTTTT
CGGACCCCAGGGCGTGGGTGCCACTTTCTGACTCTGCGGTTAGCTTAAAA
TTAAAACAAATATCGGAAAACAGGCAAGTGGTGTTGCGAAGGTGTTGGAG
TCGGCATTTAATTTCAGACAGGTGGAAGAATTTCGAGTTGGCCGAGGAAA
TGTAATATGCTCTGCGCGCCCATTTAGCCAAGGAGGAGCTCTTTTCTGTT
GTGGTTGTCCAAAGTGAAGTGAAGTGCTAGTGGGGGAAATATGCCAGGAA
TGTGTTGGCTAAAGGGTTCGGAAATTCGGGGAAATTGAGGGTTGCCAGCG
AGTGTGTTGAAAGCGGCATTCCAATGTGTAGGATATCAATAGGTAGTCGC
AAGTTAACGAAACTGAAACAGGATAGAGGGGAGACCTAAAACTAATTTGC
GATGTTTGTAGGAACTCGACTACTGGCAACGCAATTAAAGCATAGCTTGG
ATTTGAGAGTATAACAAAAAGGAAGACAAAGTTGAGACTACATGTACAAC
ATGTAAATTAAGCCTTGTAAAATAGAAAAATTTTCATAGTAAGCCCTTTT
AATGAATGCTTTTAAATGTTTGTTTCTACTAATGATTCCAGTGCTTCGCT
TAATTGAAACCGCTTTTATAATTAAAACTTTAGTTGGCTGTATAACCGGA
GAACACAATTCCAATCCCAGGAACAACCGTGAAACCGCAAAACATATATT
GTGTAATTCCGGACAAAGCGTAAAACAGAAAATACAATATATAAACCTGA
ATAAATTTATTTTCGCCGCCATTGGTCTGCCCCAATGCTGATTAATGTGG
ATTGCCCGACAAATGTGTGCACATTAGCATTAAAATATATGTACATCTAT
GGATGCTTCACTCGTTTTGTGTCCAACTTTTATTAGACCAATTAAATTGC
GGTTGGCACTGAAGAGTTGAAAAGCTACGAATATATAGAAAACTTCGATG
TCTCCCCTTTGTCTGCGTTGCCATTTAATGTGCAGCAATTTTCACCCAAC
AAAGGCAGTCAATTAGGGGGGTTCCCCACCCCTGATAAAAGACAATACTA
TTGTTGTTCTAGCCGGCGAACTAAGACATCATCATATGATAGATATTTTA
GTATCGAAGAGAGAGGGGCTACTAATTAGCCATCATCAGCAGCGGCGGCT
ACACAATTTCCACCATCAAACAACAAAACACTAAACTGCACTGGCCAGTT
AACCGCAGGTACATGAGGGTTTTTGGGTATTTCGGGCCTGTGTTCTTGTT
ATTTTTTTCTTCTTCTGTTTTTTGGGAAGCGTTAGTAACTAAATTAGCGG
CCTCTGTTATTTTTTTTTTCAGTTTTGTTCCCTCTTTGTGTGGTGTTTTT
TCGGGTTTCAGCCGCCAGACTGCAGCCACAAATTATTGGGCCCAGTGTTT
TAGTTGTGTTGGCTCCTCTTTGCTTTGTTGAGTCGACTGCTGTCTGTTGC
CTAATTTCCAGTTGCATTTGCCTGGCTAATACAGACATCTCACTAAAGAT
GGCAGGGGTGAAAAGAAAACCCAAAAAAAAAAAAAA

RH33996.complete Blast Records

Blast to MB8.fasta performed on 2010-07-15 18:42:52 has no hits.
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:26:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 6334956..6337527 2572..1 12540 99.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:27:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6342454..6345038 2585..1 12895 99.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:16:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 6335554..6338138 2585..1 12895 99.9 Minus
Blast to na_te.dros performed 2019-03-15 20:26:37
Subject Length Description Subject Range Query Range Score Percent Strand
McClintock 6450 McClintock McCLINTOCK 6450bp 1146..1228 1693..1607 119 63.2 Minus

RH33996.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:27:19 Download gff for RH33996.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 6334956..6337527 1..2572 99   Minus
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 18:07:02 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 18:07:02 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:27:19 Download gff for RH33996.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6342467..6345038 1..2572 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:27:19 Download gff for RH33996.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6342467..6345038 1..2572 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:27:19 Download gff for RH33996.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6342467..6345038 1..2572 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:07:42 Download gff for RH33996.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6335567..6338138 1..2572 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:07:42 Download gff for RH33996.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6335567..6338138 1..2572 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:07:42 Download gff for RH33996.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6335567..6338138 1..2572 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:39:06 Download gff for RH33996.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6335567..6338138 1..2572 99   Minus

RH33996.hyp Sequence

Translation from 2 to 478

> RH33996.hyp
FRFTLRKWRIAGPGIPESGLPDAVYVTCGPGKLKKLKKRQRQQALNKRML
AGEWQQRWSFRGLKGGFSEAIRGFPGTPGDRVWLAGTRSHTNARQNEATD
NTRLRTCHTKRWRDNQWNLWSQQVQCQCQTQAESQSQALRQNPTQAQVKT
IPKAARTD*
Sequence RH33996.hyp has no blast hits.

RH33996.pep Sequence

Translation from 146 to 478

> RH33996.pep
MLAGEWQQRWSFRGLKGGFSEAIRGFPGTPGDRVWLAGTRSHTNARQNEA
TDNTRLRTCHTKRWRDNQWNLWSQQVQCQCQTQAESQSQALRQNPTQAQV
KTIPKAARTD*
Sequence RH33996.pep has no blast hits.