Clone RH34065 Report

Search the DGRC for RH34065

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:340
Well:65
Vector:pFlc-1
Associated Gene/TranscriptCG32160-RA
Protein status:RH34065.pep: wuzgold
Sequenced Size:2154

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13062 2002-01-01 Sim4 clustering to Release 2
CG32160 2002-01-03 Blastp of sequenced clone
CG32160 2003-01-01 Sim4 clustering to Release 3
CG32160 2008-04-29 Release 5.5 accounting
CG32160 2008-08-15 Release 5.9 accounting
CG32160 2008-12-18 5.12 accounting

Clone Sequence Records

RH34065.complete Sequence

2154 bp (2154 high quality bases) assembled on 2002-01-03

GenBank Submission: AY075541

> RH34065.complete
GATTCGGGCAGTTGGCCAGCAGCCGCCACTTTCAGCACTTCAGGCCAAGA
CGGGTGTCGCTGAAAATGTGCTTCGCACTTGTCATTTTCCTCCTCGCAAC
TGACCGTGAAAATTTCCCCTAGCTGCAACACGCACAGCAGCCGCAAACCG
AACTCGCCCAAAGTAGTCCAAGTTCAATGGAAACGCACTTGCGTGTATCT
GTCATGGCCAAAACATAACTGGCTCTGATGTCCGGAGGGGCGGGGGGATT
TGCCTCTTCGGCTGTTTCGTCTGCGGTAGAAGGCCAACGGAGGCGGAGGT
AATAGCGGTGGTAATGGAGGAGGTAGTGGTAATGGTAATGCTATCGTCAC
CGCGTTGAGAAAGGAATGTGCGCAAACTCGCTGGCCAATTTGTTTGCCCA
TCACGTCGGCCAACGAACGCGAAACGAAATGAAAATGAATTTCTTCATAT
TTTAACAAGCCTCACAGTGGTTTTTAATGTTTACTTCATTTCGCTTTCAG
TGCGGAGATGAGTAGGAAAATACTATCACGAGAATTTCGAATAGTTATAT
CTGGAGAAGTACTTCGGAACTTTTGGAAATGTAACATATTTAAGATATCT
AAACCGAATTAATCTCCGAATATACTTTGCTTTACTGTATCTTTTATTTC
TTTGGGCAACGACAGCACTCCCTTCCTTTCTCCGCCCCTTTTTTTCCGTT
CGCATTTTCAGGTTATGCTAATCTCGGCCTGCAATTGTCTGGCATAACAA
TGGCCAGCTAGACGGGCCAGCGATAAAGCACCAGAAGGCGCAAATCCAAA
GACCGCCACAATCACAGCCACATCCCACATAGAACCGCACTCGGGACTGG
TCTGGAGTTCCGCTTTGTGTAATAAGCAAACATCGATGGCGATTGCGCAG
GCGCGCAGGTCACTCATACGCCATGGACGCAGTGGTGGCGGCAAAAAGGG
GATTAAGATATATATGATGATTTTCCTGACTAACCACTTTAGATCTTTGG
CTACTTGGTTGTCACCTTACATCCCGTTTTTAATGATCCCCTCTAATATT
TTTTGCATTTGCCACTGCTTGCAAGTGACAAACACAACTGTACCTTCAAT
GGTGTTCAACTGTAGTTGTATTTACCGCCGTTATGGTGATTTGTCAGCAA
TTTTTAGCATGATTAATGAATGTTTCAATCCGGCGACACAACTCCCTCTT
CCTCCAACCCACCGCTTTGTTAGCCGAAATTCTTGAGTGACTTTTAATAG
ATTTGAGTCTATTTCTGTTAAATTCCTTGGCAATATCCGGGCTGTGTGCT
TTTGCCACATCTGTGTTACATGTTTGTACATATCTCTCTTGGGATCTCGA
GTGGTACTGCTCTGGGGGTAATGTACGCCTTATGGCCAGCAGGCAAGTGA
CAGTTCTGTCGCTGTTTTCGTATCTTTTTTCCTTATTTTGTATTTCTAAC
ATTGCATTGCAAAAGACTGGATACAAGAGCCACTAACCACATTAAGAAAC
AGCCAGGCAATTATCAGGCAGGGAACCAGTTCCCCGGGCAAACTCGGATC
GATTGCCTGTTATCGCCACCGTTTAGCACCAAACTCAATTTCGCTTTTAA
TTAGAGACATTCGAGCTGATCTCAACTTAAACGTAATGAACAACAATTAG
CCGCGCTTAAAGATCACTTACTCGGGAGTTAAGGAACACTTGTTGACAGT
CTTTAAGCGTCATTACTCTTTCGTCGTGTTCTTACCTTAATTACCTCTAT
TTTGTTAGTATTTCCGAGTCTTTCAATATTAACTTTTGATCGGCCATTGT
ACTTTTGTGATTTTCATACACGTTACTGGCTGAAAGGTCGGCTTAGATCA
CACGGAAAAATATGAACTACGTTTTGATGTCATGTAAATAATGTATTGAA
ATTAAAAATGAGGAAGTTATTACTGCAAGTCAATTGAGAAAAATAAGTCA
AATGGTGTGGAAGTAAAGAGCAAATAACACGATCAGAAAAAAACACATAG
AATATAGAATTTTATTATTAAATTTGTACTTTATGATTACTCGAATTTAA
CAAAGCCCCTGTATTATGTCGTTTAAGGATTATAATGACTTTTGGTACTT
ACTTAAGCTTAAGTTATAATAAAGGCAGTTATTTCTTGAAAAAAAAAAAA
AAAA

RH34065.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:33:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG32160-RA 2139 CG32160-RA 2..2139 2..2139 10645 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:30:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 16299486..16301044 579..2138 7465 98.7 Plus
chr3L 24539361 chr3L 16298668..16299244 2..578 2825 99.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:27:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:30:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16309759..16311319 579..2139 7760 99.8 Plus
3L 28110227 3L 16308941..16309517 2..578 2885 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:01:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 16302859..16304419 579..2139 7760 99.8 Plus
3L 28103327 3L 16302041..16302617 2..578 2885 100 Plus
Blast to na_te.dros performed 2019-03-16 07:30:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dhet\Uhu 1658 Dhet\Uhu DHUHUH3 1658bp AKA(S51651) Derived from X63028 (Rel. 36, Last updated, Version 7). 1347..1584 651..412 134 56.2 Minus
Stalker2 7672 Stalker2 STALKER2 7672bp 5425..5503 1309..1231 123 67.9 Minus
hopper2 1593 hopper2 HOPPER2 1593bp 486..549 1879..1942 122 65.6 Plus
412 7567 412 412 7567bp 5360..5403 1270..1228 118 77.3 Minus
297 6995 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). 565..678 1915..2022 115 58.8 Plus
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 2275..2348 1059..987 115 63.5 Minus

RH34065.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:31:34 Download gff for RH34065.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 16298667..16299244 1..578 99 -> Plus
chr3L 16299486..16301044 579..2138 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:45:10 Download gff for RH34065.complete
Subject Subject Range Query Range Percent Splice Strand
CG32160-RA 1..351 886..1236 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:55:15 Download gff for RH34065.complete
Subject Subject Range Query Range Percent Splice Strand
CG32160-RA 1..351 886..1236 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:20:11 Download gff for RH34065.complete
Subject Subject Range Query Range Percent Splice Strand
CG32160-RA 1..351 886..1236 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:19:00 Download gff for RH34065.complete
Subject Subject Range Query Range Percent Splice Strand
CG32160-RA 2..2138 2..2138 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:55:15 Download gff for RH34065.complete
Subject Subject Range Query Range Percent Splice Strand
CG32160-RA 2..2138 2..2138 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:20:12 Download gff for RH34065.complete
Subject Subject Range Query Range Percent Splice Strand
CG32160-RA 2..2138 2..2138 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:31:34 Download gff for RH34065.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16308940..16309517 1..578 99 -> Plus
3L 16309759..16311318 579..2138 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:31:34 Download gff for RH34065.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16308940..16309517 1..578 99 -> Plus
3L 16309759..16311318 579..2138 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:31:34 Download gff for RH34065.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16308940..16309517 1..578 99 -> Plus
3L 16309759..16311318 579..2138 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:07 Download gff for RH34065.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16302040..16302617 1..578 99 -> Plus
arm_3L 16302859..16304418 579..2138 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:07 Download gff for RH34065.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16302040..16302617 1..578 99 -> Plus
arm_3L 16302859..16304418 579..2138 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:07 Download gff for RH34065.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16302040..16302617 1..578 99 -> Plus
arm_3L 16302859..16304418 579..2138 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:54:40 Download gff for RH34065.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16302040..16302617 1..578 99 -> Plus
3L 16302859..16304418 579..2138 99   Plus

RH34065.pep Sequence

Translation from 885 to 1235

> RH34065.pep
MAIAQARRSLIRHGRSGGGKKGIKIYMMIFLTNHFRSLATWLSPYIPFLM
IPSNIFCICHCLQVTNTTVPSMVFNCSCIYRRYGDLSAIFSMINECFNPA
TQLPLPPTHRFVSRNS*

RH34065.pep Blast Records

Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:39:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17952-PA 44 GD17952-PA 1..44 1..44 172 75 Plus

RH34065.hyp Sequence

Translation from 885 to 1235

> RH34065.hyp
MAIAQARRSLIRHGRSGGGKKGIKIYMMIFLTNHFRSLATWLSPYIPFLM
IPSNIFCICHCLQVTNTTVPSMVFNCSCIYRRYGDLSAIFSMINECFNPA
TQLPLPPTHRFVSRNS*
Sequence RH34065.hyp has no blast hits.