Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
RH34065.complete Sequence
2154 bp (2154 high quality bases) assembled on 2002-01-03
GenBank Submission: AY075541
> RH34065.complete
GATTCGGGCAGTTGGCCAGCAGCCGCCACTTTCAGCACTTCAGGCCAAGA
CGGGTGTCGCTGAAAATGTGCTTCGCACTTGTCATTTTCCTCCTCGCAAC
TGACCGTGAAAATTTCCCCTAGCTGCAACACGCACAGCAGCCGCAAACCG
AACTCGCCCAAAGTAGTCCAAGTTCAATGGAAACGCACTTGCGTGTATCT
GTCATGGCCAAAACATAACTGGCTCTGATGTCCGGAGGGGCGGGGGGATT
TGCCTCTTCGGCTGTTTCGTCTGCGGTAGAAGGCCAACGGAGGCGGAGGT
AATAGCGGTGGTAATGGAGGAGGTAGTGGTAATGGTAATGCTATCGTCAC
CGCGTTGAGAAAGGAATGTGCGCAAACTCGCTGGCCAATTTGTTTGCCCA
TCACGTCGGCCAACGAACGCGAAACGAAATGAAAATGAATTTCTTCATAT
TTTAACAAGCCTCACAGTGGTTTTTAATGTTTACTTCATTTCGCTTTCAG
TGCGGAGATGAGTAGGAAAATACTATCACGAGAATTTCGAATAGTTATAT
CTGGAGAAGTACTTCGGAACTTTTGGAAATGTAACATATTTAAGATATCT
AAACCGAATTAATCTCCGAATATACTTTGCTTTACTGTATCTTTTATTTC
TTTGGGCAACGACAGCACTCCCTTCCTTTCTCCGCCCCTTTTTTTCCGTT
CGCATTTTCAGGTTATGCTAATCTCGGCCTGCAATTGTCTGGCATAACAA
TGGCCAGCTAGACGGGCCAGCGATAAAGCACCAGAAGGCGCAAATCCAAA
GACCGCCACAATCACAGCCACATCCCACATAGAACCGCACTCGGGACTGG
TCTGGAGTTCCGCTTTGTGTAATAAGCAAACATCGATGGCGATTGCGCAG
GCGCGCAGGTCACTCATACGCCATGGACGCAGTGGTGGCGGCAAAAAGGG
GATTAAGATATATATGATGATTTTCCTGACTAACCACTTTAGATCTTTGG
CTACTTGGTTGTCACCTTACATCCCGTTTTTAATGATCCCCTCTAATATT
TTTTGCATTTGCCACTGCTTGCAAGTGACAAACACAACTGTACCTTCAAT
GGTGTTCAACTGTAGTTGTATTTACCGCCGTTATGGTGATTTGTCAGCAA
TTTTTAGCATGATTAATGAATGTTTCAATCCGGCGACACAACTCCCTCTT
CCTCCAACCCACCGCTTTGTTAGCCGAAATTCTTGAGTGACTTTTAATAG
ATTTGAGTCTATTTCTGTTAAATTCCTTGGCAATATCCGGGCTGTGTGCT
TTTGCCACATCTGTGTTACATGTTTGTACATATCTCTCTTGGGATCTCGA
GTGGTACTGCTCTGGGGGTAATGTACGCCTTATGGCCAGCAGGCAAGTGA
CAGTTCTGTCGCTGTTTTCGTATCTTTTTTCCTTATTTTGTATTTCTAAC
ATTGCATTGCAAAAGACTGGATACAAGAGCCACTAACCACATTAAGAAAC
AGCCAGGCAATTATCAGGCAGGGAACCAGTTCCCCGGGCAAACTCGGATC
GATTGCCTGTTATCGCCACCGTTTAGCACCAAACTCAATTTCGCTTTTAA
TTAGAGACATTCGAGCTGATCTCAACTTAAACGTAATGAACAACAATTAG
CCGCGCTTAAAGATCACTTACTCGGGAGTTAAGGAACACTTGTTGACAGT
CTTTAAGCGTCATTACTCTTTCGTCGTGTTCTTACCTTAATTACCTCTAT
TTTGTTAGTATTTCCGAGTCTTTCAATATTAACTTTTGATCGGCCATTGT
ACTTTTGTGATTTTCATACACGTTACTGGCTGAAAGGTCGGCTTAGATCA
CACGGAAAAATATGAACTACGTTTTGATGTCATGTAAATAATGTATTGAA
ATTAAAAATGAGGAAGTTATTACTGCAAGTCAATTGAGAAAAATAAGTCA
AATGGTGTGGAAGTAAAGAGCAAATAACACGATCAGAAAAAAACACATAG
AATATAGAATTTTATTATTAAATTTGTACTTTATGATTACTCGAATTTAA
CAAAGCCCCTGTATTATGTCGTTTAAGGATTATAATGACTTTTGGTACTT
ACTTAAGCTTAAGTTATAATAAAGGCAGTTATTTCTTGAAAAAAAAAAAA
AAAA
RH34065.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:33:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32160-RA | 2139 | CG32160-RA | 2..2139 | 2..2139 | 10645 | 99.8 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:30:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 16299486..16301044 | 579..2138 | 7465 | 98.7 | Plus |
chr3L | 24539361 | chr3L | 16298668..16299244 | 2..578 | 2825 | 99.3 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:27:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:30:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16309759..16311319 | 579..2139 | 7760 | 99.8 | Plus |
3L | 28110227 | 3L | 16308941..16309517 | 2..578 | 2885 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:01:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 16302859..16304419 | 579..2139 | 7760 | 99.8 | Plus |
3L | 28103327 | 3L | 16302041..16302617 | 2..578 | 2885 | 100 | Plus |
Blast to na_te.dros performed 2019-03-16 07:30:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dhet\Uhu | 1658 | Dhet\Uhu DHUHUH3 1658bp AKA(S51651) Derived from X63028 (Rel. 36, Last updated, Version 7). | 1347..1584 | 651..412 | 134 | 56.2 | Minus |
Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 5425..5503 | 1309..1231 | 123 | 67.9 | Minus |
hopper2 | 1593 | hopper2 HOPPER2 1593bp | 486..549 | 1879..1942 | 122 | 65.6 | Plus |
412 | 7567 | 412 412 7567bp | 5360..5403 | 1270..1228 | 118 | 77.3 | Minus |
297 | 6995 | 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). | 565..678 | 1915..2022 | 115 | 58.8 | Plus |
17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 2275..2348 | 1059..987 | 115 | 63.5 | Minus |
RH34065.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:31:34 Download gff for
RH34065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 16298667..16299244 | 1..578 | 99 | -> | Plus |
chr3L | 16299486..16301044 | 579..2138 | 97 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:45:10 Download gff for
RH34065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32160-RA | 1..351 | 886..1236 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:55:15 Download gff for
RH34065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32160-RA | 1..351 | 886..1236 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:20:11 Download gff for
RH34065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32160-RA | 1..351 | 886..1236 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:19:00 Download gff for
RH34065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32160-RA | 2..2138 | 2..2138 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:55:15 Download gff for
RH34065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32160-RA | 2..2138 | 2..2138 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:20:12 Download gff for
RH34065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32160-RA | 2..2138 | 2..2138 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:31:34 Download gff for
RH34065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16308940..16309517 | 1..578 | 99 | -> | Plus |
3L | 16309759..16311318 | 579..2138 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:31:34 Download gff for
RH34065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16308940..16309517 | 1..578 | 99 | -> | Plus |
3L | 16309759..16311318 | 579..2138 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:31:34 Download gff for
RH34065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16308940..16309517 | 1..578 | 99 | -> | Plus |
3L | 16309759..16311318 | 579..2138 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:07 Download gff for
RH34065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16302040..16302617 | 1..578 | 99 | -> | Plus |
arm_3L | 16302859..16304418 | 579..2138 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:07 Download gff for
RH34065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16302040..16302617 | 1..578 | 99 | -> | Plus |
arm_3L | 16302859..16304418 | 579..2138 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:07 Download gff for
RH34065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16302040..16302617 | 1..578 | 99 | -> | Plus |
arm_3L | 16302859..16304418 | 579..2138 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:54:40 Download gff for
RH34065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16302040..16302617 | 1..578 | 99 | -> | Plus |
3L | 16302859..16304418 | 579..2138 | 99 | | Plus |
RH34065.pep Sequence
Translation from 885 to 1235
> RH34065.pep
MAIAQARRSLIRHGRSGGGKKGIKIYMMIFLTNHFRSLATWLSPYIPFLM
IPSNIFCICHCLQVTNTTVPSMVFNCSCIYRRYGDLSAIFSMINECFNPA
TQLPLPPTHRFVSRNS*
RH34065.pep Blast Records
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:39:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD17952-PA | 44 | GD17952-PA | 1..44 | 1..44 | 172 | 75 | Plus |
RH34065.hyp Sequence
Translation from 885 to 1235
> RH34065.hyp
MAIAQARRSLIRHGRSGGGKKGIKIYMMIFLTNHFRSLATWLSPYIPFLM
IPSNIFCICHCLQVTNTTVPSMVFNCSCIYRRYGDLSAIFSMINECFNPA
TQLPLPPTHRFVSRNS*
Sequence RH34065.hyp has no blast hits.