BDGP Sequence Production Resources |
Search the DGRC for RH34107
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 341 |
Well: | 7 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG3999-RA |
Protein status: | RH34107.pep: gold |
Preliminary Size: | 2995 |
Sequenced Size: | 3210 |
Gene | Date | Evidence |
---|---|---|
CG3999 | 2002-01-01 | Sim4 clustering to Release 2 |
CG3999 | 2003-01-01 | Sim4 clustering to Release 3 |
CG3999 | 2003-01-22 | Blastp of sequenced clone |
CG3999 | 2008-04-29 | Release 5.5 accounting |
CG3999 | 2008-08-15 | Release 5.9 accounting |
CG3999 | 2008-12-18 | 5.12 accounting |
3210 bp (3210 high quality bases) assembled on 2003-01-22
GenBank Submission: BT003457
> RH34107.complete GAGTCATCTATTGAAAACCGCGTGGAGTGGACGTGCCTTAGTTTATTGGA TTAAACCTTACCATGCAGCGATTTTTGGGAAGGAGCAGCCAAAGCCTTTT GCTAAGATGTGGTCATCGCTATCTGGCCACCACTCCTGTGGAGGAGGTCA TATTTCCCACCAAATCGGATTTTCCCAGTCGTCATATTGGGCCTCGAAAG ACGGATGTGGTGGCCATGTTGGATACTTTGGGCTTCAAGTCCCTGGCGGA GCTCACAGAGAAAGCTGTGCCCCAGAGCATTCAACTGAAGAGGGAACTCG ACCTGGACAAACCTCTGAATGAGCACGAGCTAATCCGCCGAATTCGCGAC ATCTCGCTAAAGAATCAACTGTGGCGCTCCTACATCGGAATGGGTTACCA CAACTGCCATGTGCCGCACACCATTATCCGGAATATGTTCGAGAATCCGG GTTGGACCACTCAGTACACCCCGTACCAGCCGGAAATCGCCCAGGGACGC TTGGAGTCGCTGCTGAACTATCAGACCCTGGTAACCGATCTCACCGGCTT GGATGTGGCCAATGCCTCGCTATTGGACGAGGGAACCGCTGCTGCCGAGG CCATGTGCCTGGCCACCAGGCACAACAAGCGCAAAAAGCTCTACCTGTCG AACAGGGTGCATCCGCAGACGCTGTCCGTAGTCAAGACGCGAACGGAAGC CTTGGAGCTGGAAATCGTGGTGGGACCTATTGAACAGGCGGATCTGCCAA GCCGCGAATTGGCTGGCATTCTTCTCCAGTATCCAGATACTTATGGTGAT GTCAAGGACTTCGAGGATATCGCAGCTTTGGCAAAGAAAAATGGGACCCT CGTGGTGGTGGCGACCGATTTGTTGTCGTTAACCCTTCTGCGTCCTCCGG CGGAATTTGGAGCTGATATTGCAGTGGGAACCTCCCAGCGATTGGGAGTT CCTCTGGGATACGGTGGCCCCCATGCCGGATTTTTTGCCTGCAAGCAGAG CTTGGTGCGGCTAATGCCGGGAAGGATGATTGGCGTGACCAGGGATATGG ACGGAAACGATGCCTATCGTCTGGCCCTGCAAACCAGGGAGCAGCATATC CGGCGGGATAAGGCAACAAGTAACATTTGCACGGCACAGGCTCTTCTGGC CAACATGTCGGCCATGTACGCCATCTACCACGGTCCGGAGGGTCTGAAAG CCATGGCCAATCGCATCCACCATTTCACGTTGACCCTTCAAACGGGTGTC CTGGGAGCGGGTCACGAAGTGATCAACAAGAACTTCTTCGACACACTTCA CATTAGACTGGGTGGAGGTCAATCCCTTGAGGATCTCAAAGAGCGTGCCG AGCACAAGCGCATTAATCTCCGATATCTTGAAGATGACACTGTTGGCGTG GCCCTTGATGAAACGGTCAGTGTAGCCGATGTGGACGATCTGTTGTGGGT CTTCAAGGCAGAGGCATCTGTGGAACACATTCTGGCGCGTAAAGATGTCC TTAAGAACTCGATTGAGAACTCCAAGTTCCTGCGCACTTCGCCCTATCTG CAGCACCCTATTTTCCAGAGCTATCACAGCGAGTCCCGCATGGTGCGCTA CATGAAAAAGCTGGAGAATAAGGACATCTCCCTGGTGCACTCCATGATCC CCCTGGGATCCTGCACTATGAAGCTGAACTCCACCACCGAGATGATGCCT TGTTCCTTCCGCCACTTCACCGATATCCATCCTTTTGCGCCGGTGGAACA AGCCCAGGGATTCCATCAGATGTTCAAGGAACTGGAGCATGACCTATGCG AGATTACAGGATACGATCGTATCTCCTTCCAGCCGAACTCGGGGGCCCAA GGAGAATATGCAGGACTGAGAGCCATCAGGAGCTACCATGAACACCGAAA TGAAGGACACAGAAATATTTGTCTGATTCCAATTTCTGCCCACGGCACAA ATCCAGCTTCTGCACAAATGGCGGGTATGAAGGTGGAGCCTATTAGAATT TTGTCGAATGGTTCCATCGACATGGCACACCTAAGAGCTAAGGCAGAGGA GCACGCCCACGAGTTGTCCTGCCTAATGATTACCTATCCATCGACAATGG GCGTGTTCGAGGAAACGGTTGCCGATATTTGCACCCTGATCCACAAGCAT GGCGGACAGGTGTACCTGGATGGAGCCAACATGAATGCCCAGGTTGGGCT GTGTCGACCTGGAGATTATGGCAGCGATGTTTCGCATCTCAACCTGCACA AGACCTTCTGCATTCCGCATGGTGGTGGTGGTCCTGGAATGGGTCCCATC GGCGTGAAAGCCCATTTGGCACCATACCTTCCTGGTCATCCTGTTGTCAG TCCGTTGAGCAGCGAGGAGCACAGTTTTGGAGTCGTATCCGCCGCTCCCT TCGGAAGCTCTGCCATTTTGCCCATATCCTGGTCGTACATTAAACTCATG GGCAGCAGGGGTTTGAAGAGAGCTACCCAGGTGGCCATTCTCAATGCAAA CTACATGTCCAAGAGGCTGGAGCAGCATTACAAGACTCTCTACAAGGCAC CCAACTCTCAGCTGGTTGCGCATGAGTTCATTTTGGATATACGCGACCTG AAGAAATCGGCCAATATCGAGGCAGTGGATGTGGCCAAGCGACTCATGGA TTACGGCTTCCATGCACCAACTATGTCTTGGCCCGTCGCTGGAACCCTGA TGATCGAGCCCACTGAATCGGAGGATAAGGAGGAGTTGGATAGGTTCTGT GATGCCATGATTTCCATTCGAGAGGAGATTGCCGAGATCGAGGCGGGTCG CATGGACAAGGCAGTCAATCCACTGAAGATGTCTCCTCACACCCAAGCTC AGGTGATCTCGGATAAGTGGGATCGACCATATACACGGGAGCAGGCTGCC TTCCCCGCCATCTTTGTAAAACCAGATGCCAAGATCTGGCCCACTGTGGG CAGGATCGATGATGCCTATGGTGACAAGCACCTTGTGTGTACCTGTCCGC CAATACTGCCTGATTTATAAGGCACTTCAGTTCTAAGACCAAACAATCAA TTTATATTACACTACTTTTTAAATAAACCCCTTGAACGTATCTTTTATAT AAGAAGGTTCTTTATTTTTCGTTGATAAATTAATTATCTAAAAAAATCAT ATATGGTACATTTAGCAATCAATAAAGCTTCACATTTATTTAAAACTAAA AAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 6079298..6080632 | 1575..2909 | 6645 | 99.9 | Plus |
chr3R | 27901430 | chr3R | 6078510..6079244 | 845..1579 | 3630 | 99.6 | Plus |
chr3R | 27901430 | chr3R | 6077884..6078410 | 319..845 | 2590 | 99.4 | Plus |
chr3R | 27901430 | chr3R | 6080694..6080981 | 2910..3197 | 1410 | 99.3 | Plus |
chr3R | 27901430 | chr3R | 6077232..6077469 | 2..239 | 1175 | 99.6 | Plus |
chr3R | 27901430 | chr3R | 6077600..6077680 | 238..318 | 390 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 10253585..10254919 | 1575..2909 | 6660 | 99.9 | Plus |
3R | 32079331 | 3R | 10252797..10253531 | 845..1579 | 3675 | 100 | Plus |
3R | 32079331 | 3R | 10252171..10252697 | 319..845 | 2620 | 99.8 | Plus |
3R | 32079331 | 3R | 10254981..10255270 | 2910..3199 | 1450 | 100 | Plus |
3R | 32079331 | 3R | 10251519..10251756 | 2..239 | 1190 | 100 | Plus |
3R | 32079331 | 3R | 10251887..10251967 | 238..318 | 405 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 9994416..9995750 | 1575..2909 | 6660 | 99.9 | Plus |
3R | 31820162 | 3R | 9993628..9994362 | 845..1579 | 3675 | 100 | Plus |
3R | 31820162 | 3R | 9993002..9993528 | 319..845 | 2620 | 99.8 | Plus |
3R | 31820162 | 3R | 9995812..9996101 | 2910..3199 | 1450 | 100 | Plus |
3R | 31820162 | 3R | 9992350..9992587 | 2..239 | 1190 | 100 | Plus |
3R | 31820162 | 3R | 9992718..9992798 | 238..318 | 405 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 6077231..6077469 | 1..239 | 99 | -> | Plus |
chr3R | 6077602..6077680 | 240..318 | 98 | -> | Plus |
chr3R | 6077884..6078410 | 319..845 | 99 | -> | Plus |
chr3R | 6078511..6079244 | 846..1579 | 99 | -> | Plus |
chr3R | 6079303..6080632 | 1580..2909 | 99 | -> | Plus |
chr3R | 6080694..6080967 | 2910..3183 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3999-RA | 1..2958 | 63..3020 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3999-RA | 1..2958 | 63..3020 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3999-RA | 1..2958 | 63..3020 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3999-RA | 1..2958 | 63..3020 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3999-RA | 1..2958 | 63..3020 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3999-RA | 2..3197 | 2..3197 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3999-RA | 2..3197 | 2..3197 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3999-RA | 2..3197 | 2..3197 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3999-RA | 2..3197 | 2..3197 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3999-RA | 2..3197 | 2..3197 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10252171..10252697 | 319..845 | 99 | -> | Plus |
3R | 10251518..10251756 | 1..239 | 99 | -> | Plus |
3R | 10251889..10251967 | 240..318 | 100 | -> | Plus |
3R | 10252798..10253531 | 846..1579 | 100 | -> | Plus |
3R | 10253590..10254919 | 1580..2909 | 99 | -> | Plus |
3R | 10254981..10255268 | 2910..3197 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10252171..10252697 | 319..845 | 99 | -> | Plus |
3R | 10251518..10251756 | 1..239 | 99 | -> | Plus |
3R | 10251889..10251967 | 240..318 | 100 | -> | Plus |
3R | 10252798..10253531 | 846..1579 | 100 | -> | Plus |
3R | 10253590..10254919 | 1580..2909 | 99 | -> | Plus |
3R | 10254981..10255268 | 2910..3197 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10252171..10252697 | 319..845 | 99 | -> | Plus |
3R | 10251518..10251756 | 1..239 | 99 | -> | Plus |
3R | 10251889..10251967 | 240..318 | 100 | -> | Plus |
3R | 10252798..10253531 | 846..1579 | 100 | -> | Plus |
3R | 10253590..10254919 | 1580..2909 | 99 | -> | Plus |
3R | 10254981..10255268 | 2910..3197 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 6077240..6077478 | 1..239 | 99 | -> | Plus |
arm_3R | 6077611..6077689 | 240..318 | 100 | -> | Plus |
arm_3R | 6077893..6078419 | 319..845 | 99 | -> | Plus |
arm_3R | 6078520..6079253 | 846..1579 | 100 | -> | Plus |
arm_3R | 6079312..6080641 | 1580..2909 | 99 | -> | Plus |
arm_3R | 6080703..6080990 | 2910..3197 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9992349..9992587 | 1..239 | 99 | -> | Plus |
3R | 9992720..9992798 | 240..318 | 100 | -> | Plus |
3R | 9993002..9993528 | 319..845 | 99 | -> | Plus |
3R | 9993629..9994362 | 846..1579 | 100 | -> | Plus |
3R | 9994421..9995750 | 1580..2909 | 99 | -> | Plus |
3R | 9995812..9996099 | 2910..3197 | 100 | Plus |
Translation from 62 to 3019
> RH34107.pep MQRFLGRSSQSLLLRCGHRYLATTPVEEVIFPTKSDFPSRHIGPRKTDVV AMLDTLGFKSLAELTEKAVPQSIQLKRELDLDKPLNEHELIRRIRDISLK NQLWRSYIGMGYHNCHVPHTIIRNMFENPGWTTQYTPYQPEIAQGRLESL LNYQTLVTDLTGLDVANASLLDEGTAAAEAMCLATRHNKRKKLYLSNRVH PQTLSVVKTRTEALELEIVVGPIEQADLPSRELAGILLQYPDTYGDVKDF EDIAALAKKNGTLVVVATDLLSLTLLRPPAEFGADIAVGTSQRLGVPLGY GGPHAGFFACKQSLVRLMPGRMIGVTRDMDGNDAYRLALQTREQHIRRDK ATSNICTAQALLANMSAMYAIYHGPEGLKAMANRIHHFTLTLQTGVLGAG HEVINKNFFDTLHIRLGGGQSLEDLKERAEHKRINLRYLEDDTVGVALDE TVSVADVDDLLWVFKAEASVEHILARKDVLKNSIENSKFLRTSPYLQHPI FQSYHSESRMVRYMKKLENKDISLVHSMIPLGSCTMKLNSTTEMMPCSFR HFTDIHPFAPVEQAQGFHQMFKELEHDLCEITGYDRISFQPNSGAQGEYA GLRAIRSYHEHRNEGHRNICLIPISAHGTNPASAQMAGMKVEPIRILSNG SIDMAHLRAKAEEHAHELSCLMITYPSTMGVFEETVADICTLIHKHGGQV YLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKA HLAPYLPGHPVVSPLSSEEHSFGVVSAAPFGSSAILPISWSYIKLMGSRG LKRATQVAILNANYMSKRLEQHYKTLYKAPNSQLVAHEFILDIRDLKKSA NIEAVDVAKRLMDYGFHAPTMSWPVAGTLMIEPTESEDKEELDRFCDAMI SIREEIAEIEAGRMDKAVNPLKMSPHTQAQVISDKWDRPYTREQAAFPAI FVKPDAKIWPTVGRIDDAYGDKHLVCTCPPILPDL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17458-PA | 985 | GF17458-PA | 1..985 | 1..985 | 5170 | 96.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17487-PA | 987 | GG17487-PA | 1..987 | 1..985 | 5260 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19120-PA | 985 | GH19120-PA | 1..985 | 1..985 | 4822 | 92.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG3999-PB | 985 | CG3999-PB | 1..985 | 1..985 | 5156 | 100 | Plus |
CG3999-PA | 985 | CG3999-PA | 1..985 | 1..985 | 5156 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23575-PA | 985 | GI23575-PA | 1..985 | 1..985 | 4786 | 91.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23685-PA | 985 | GL23685-PA | 1..985 | 1..985 | 4939 | 94.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA26702-PA | 985 | GA26702-PA | 1..985 | 1..985 | 4937 | 94.5 | Plus |
Dpse\GA26699-PA | 985 | GA26699-PA | 1..985 | 1..985 | 4919 | 94.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23871-PA | 887 | GM23871-PA | 401..887 | 499..985 | 2664 | 99.6 | Plus |
Dsec\GM23871-PA | 887 | GM23871-PA | 1..400 | 1..400 | 2099 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18680-PA | 44 | GD18680-PA | 9..44 | 950..985 | 216 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23552-PA | 985 | GJ23552-PA | 1..985 | 1..985 | 4840 | 93 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22634-PA | 988 | GK22634-PA | 1..988 | 1..985 | 4935 | 93.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE26022-PA | 985 | GE26022-PA | 1..985 | 1..985 | 5290 | 99.1 | Plus |
Translation from 62 to 3019
> RH34107.hyp MQRFLGRSSQSLLLRCGHRYLATTPVEEVIFPTKSDFPSRHIGPRKTDVV AMLDTLGFKSLAELTEKAVPQSIQLKRELDLDKPLNEHELIRRIRDISLK NQLWRSYIGMGYHNCHVPHTIIRNMFENPGWTTQYTPYQPEIAQGRLESL LNYQTLVTDLTGLDVANASLLDEGTAAAEAMCLATRHNKRKKLYLSNRVH PQTLSVVKTRTEALELEIVVGPIEQADLPSRELAGILLQYPDTYGDVKDF EDIAALAKKNGTLVVVATDLLSLTLLRPPAEFGADIAVGTSQRLGVPLGY GGPHAGFFACKQSLVRLMPGRMIGVTRDMDGNDAYRLALQTREQHIRRDK ATSNICTAQALLANMSAMYAIYHGPEGLKAMANRIHHFTLTLQTGVLGAG HEVINKNFFDTLHIRLGGGQSLEDLKERAEHKRINLRYLEDDTVGVALDE TVSVADVDDLLWVFKAEASVEHILARKDVLKNSIENSKFLRTSPYLQHPI FQSYHSESRMVRYMKKLENKDISLVHSMIPLGSCTMKLNSTTEMMPCSFR HFTDIHPFAPVEQAQGFHQMFKELEHDLCEITGYDRISFQPNSGAQGEYA GLRAIRSYHEHRNEGHRNICLIPISAHGTNPASAQMAGMKVEPIRILSNG SIDMAHLRAKAEEHAHELSCLMITYPSTMGVFEETVADICTLIHKHGGQV YLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKA HLAPYLPGHPVVSPLSSEEHSFGVVSAAPFGSSAILPISWSYIKLMGSRG LKRATQVAILNANYMSKRLEQHYKTLYKAPNSQLVAHEFILDIRDLKKSA NIEAVDVAKRLMDYGFHAPTMSWPVAGTLMIEPTESEDKEELDRFCDAMI SIREEIAEIEAGRMDKAVNPLKMSPHTQAQVISDKWDRPYTREQAAFPAI FVKPDAKIWPTVGRIDDAYGDKHLVCTCPPILPDL*