Clone RH34107 Report

Search the DGRC for RH34107

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:341
Well:7
Vector:pFlc-1
Associated Gene/TranscriptCG3999-RA
Protein status:RH34107.pep: gold
Preliminary Size:2995
Sequenced Size:3210

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3999 2002-01-01 Sim4 clustering to Release 2
CG3999 2003-01-01 Sim4 clustering to Release 3
CG3999 2003-01-22 Blastp of sequenced clone
CG3999 2008-04-29 Release 5.5 accounting
CG3999 2008-08-15 Release 5.9 accounting
CG3999 2008-12-18 5.12 accounting

Clone Sequence Records

RH34107.complete Sequence

3210 bp (3210 high quality bases) assembled on 2003-01-22

GenBank Submission: BT003457

> RH34107.complete
GAGTCATCTATTGAAAACCGCGTGGAGTGGACGTGCCTTAGTTTATTGGA
TTAAACCTTACCATGCAGCGATTTTTGGGAAGGAGCAGCCAAAGCCTTTT
GCTAAGATGTGGTCATCGCTATCTGGCCACCACTCCTGTGGAGGAGGTCA
TATTTCCCACCAAATCGGATTTTCCCAGTCGTCATATTGGGCCTCGAAAG
ACGGATGTGGTGGCCATGTTGGATACTTTGGGCTTCAAGTCCCTGGCGGA
GCTCACAGAGAAAGCTGTGCCCCAGAGCATTCAACTGAAGAGGGAACTCG
ACCTGGACAAACCTCTGAATGAGCACGAGCTAATCCGCCGAATTCGCGAC
ATCTCGCTAAAGAATCAACTGTGGCGCTCCTACATCGGAATGGGTTACCA
CAACTGCCATGTGCCGCACACCATTATCCGGAATATGTTCGAGAATCCGG
GTTGGACCACTCAGTACACCCCGTACCAGCCGGAAATCGCCCAGGGACGC
TTGGAGTCGCTGCTGAACTATCAGACCCTGGTAACCGATCTCACCGGCTT
GGATGTGGCCAATGCCTCGCTATTGGACGAGGGAACCGCTGCTGCCGAGG
CCATGTGCCTGGCCACCAGGCACAACAAGCGCAAAAAGCTCTACCTGTCG
AACAGGGTGCATCCGCAGACGCTGTCCGTAGTCAAGACGCGAACGGAAGC
CTTGGAGCTGGAAATCGTGGTGGGACCTATTGAACAGGCGGATCTGCCAA
GCCGCGAATTGGCTGGCATTCTTCTCCAGTATCCAGATACTTATGGTGAT
GTCAAGGACTTCGAGGATATCGCAGCTTTGGCAAAGAAAAATGGGACCCT
CGTGGTGGTGGCGACCGATTTGTTGTCGTTAACCCTTCTGCGTCCTCCGG
CGGAATTTGGAGCTGATATTGCAGTGGGAACCTCCCAGCGATTGGGAGTT
CCTCTGGGATACGGTGGCCCCCATGCCGGATTTTTTGCCTGCAAGCAGAG
CTTGGTGCGGCTAATGCCGGGAAGGATGATTGGCGTGACCAGGGATATGG
ACGGAAACGATGCCTATCGTCTGGCCCTGCAAACCAGGGAGCAGCATATC
CGGCGGGATAAGGCAACAAGTAACATTTGCACGGCACAGGCTCTTCTGGC
CAACATGTCGGCCATGTACGCCATCTACCACGGTCCGGAGGGTCTGAAAG
CCATGGCCAATCGCATCCACCATTTCACGTTGACCCTTCAAACGGGTGTC
CTGGGAGCGGGTCACGAAGTGATCAACAAGAACTTCTTCGACACACTTCA
CATTAGACTGGGTGGAGGTCAATCCCTTGAGGATCTCAAAGAGCGTGCCG
AGCACAAGCGCATTAATCTCCGATATCTTGAAGATGACACTGTTGGCGTG
GCCCTTGATGAAACGGTCAGTGTAGCCGATGTGGACGATCTGTTGTGGGT
CTTCAAGGCAGAGGCATCTGTGGAACACATTCTGGCGCGTAAAGATGTCC
TTAAGAACTCGATTGAGAACTCCAAGTTCCTGCGCACTTCGCCCTATCTG
CAGCACCCTATTTTCCAGAGCTATCACAGCGAGTCCCGCATGGTGCGCTA
CATGAAAAAGCTGGAGAATAAGGACATCTCCCTGGTGCACTCCATGATCC
CCCTGGGATCCTGCACTATGAAGCTGAACTCCACCACCGAGATGATGCCT
TGTTCCTTCCGCCACTTCACCGATATCCATCCTTTTGCGCCGGTGGAACA
AGCCCAGGGATTCCATCAGATGTTCAAGGAACTGGAGCATGACCTATGCG
AGATTACAGGATACGATCGTATCTCCTTCCAGCCGAACTCGGGGGCCCAA
GGAGAATATGCAGGACTGAGAGCCATCAGGAGCTACCATGAACACCGAAA
TGAAGGACACAGAAATATTTGTCTGATTCCAATTTCTGCCCACGGCACAA
ATCCAGCTTCTGCACAAATGGCGGGTATGAAGGTGGAGCCTATTAGAATT
TTGTCGAATGGTTCCATCGACATGGCACACCTAAGAGCTAAGGCAGAGGA
GCACGCCCACGAGTTGTCCTGCCTAATGATTACCTATCCATCGACAATGG
GCGTGTTCGAGGAAACGGTTGCCGATATTTGCACCCTGATCCACAAGCAT
GGCGGACAGGTGTACCTGGATGGAGCCAACATGAATGCCCAGGTTGGGCT
GTGTCGACCTGGAGATTATGGCAGCGATGTTTCGCATCTCAACCTGCACA
AGACCTTCTGCATTCCGCATGGTGGTGGTGGTCCTGGAATGGGTCCCATC
GGCGTGAAAGCCCATTTGGCACCATACCTTCCTGGTCATCCTGTTGTCAG
TCCGTTGAGCAGCGAGGAGCACAGTTTTGGAGTCGTATCCGCCGCTCCCT
TCGGAAGCTCTGCCATTTTGCCCATATCCTGGTCGTACATTAAACTCATG
GGCAGCAGGGGTTTGAAGAGAGCTACCCAGGTGGCCATTCTCAATGCAAA
CTACATGTCCAAGAGGCTGGAGCAGCATTACAAGACTCTCTACAAGGCAC
CCAACTCTCAGCTGGTTGCGCATGAGTTCATTTTGGATATACGCGACCTG
AAGAAATCGGCCAATATCGAGGCAGTGGATGTGGCCAAGCGACTCATGGA
TTACGGCTTCCATGCACCAACTATGTCTTGGCCCGTCGCTGGAACCCTGA
TGATCGAGCCCACTGAATCGGAGGATAAGGAGGAGTTGGATAGGTTCTGT
GATGCCATGATTTCCATTCGAGAGGAGATTGCCGAGATCGAGGCGGGTCG
CATGGACAAGGCAGTCAATCCACTGAAGATGTCTCCTCACACCCAAGCTC
AGGTGATCTCGGATAAGTGGGATCGACCATATACACGGGAGCAGGCTGCC
TTCCCCGCCATCTTTGTAAAACCAGATGCCAAGATCTGGCCCACTGTGGG
CAGGATCGATGATGCCTATGGTGACAAGCACCTTGTGTGTACCTGTCCGC
CAATACTGCCTGATTTATAAGGCACTTCAGTTCTAAGACCAAACAATCAA
TTTATATTACACTACTTTTTAAATAAACCCCTTGAACGTATCTTTTATAT
AAGAAGGTTCTTTATTTTTCGTTGATAAATTAATTATCTAAAAAAATCAT
ATATGGTACATTTAGCAATCAATAAAGCTTCACATTTATTTAAAACTAAA
AAAAAAAAAA

RH34107.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:23:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG3999.c 3523 CG3999.c 13..3210 2..3199 15960 99.9 Plus
CG3999.b 5063 CG3999.b 13..3210 2..3199 15960 99.9 Plus
CG3999.a 8493 CG3999.a 13..3210 2..3199 15960 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:43:15
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 6079298..6080632 1575..2909 6645 99.9 Plus
chr3R 27901430 chr3R 6078510..6079244 845..1579 3630 99.6 Plus
chr3R 27901430 chr3R 6077884..6078410 319..845 2590 99.4 Plus
chr3R 27901430 chr3R 6080694..6080981 2910..3197 1410 99.3 Plus
chr3R 27901430 chr3R 6077232..6077469 2..239 1175 99.6 Plus
chr3R 27901430 chr3R 6077600..6077680 238..318 390 98.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:27:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:43:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10253585..10254919 1575..2909 6660 99.9 Plus
3R 32079331 3R 10252797..10253531 845..1579 3675 100 Plus
3R 32079331 3R 10252171..10252697 319..845 2620 99.8 Plus
3R 32079331 3R 10254981..10255270 2910..3199 1450 100 Plus
3R 32079331 3R 10251519..10251756 2..239 1190 100 Plus
3R 32079331 3R 10251887..10251967 238..318 405 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:01:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 9994416..9995750 1575..2909 6660 99.9 Plus
3R 31820162 3R 9993628..9994362 845..1579 3675 100 Plus
3R 31820162 3R 9993002..9993528 319..845 2620 99.8 Plus
3R 31820162 3R 9995812..9996101 2910..3199 1450 100 Plus
3R 31820162 3R 9992350..9992587 2..239 1190 100 Plus
3R 31820162 3R 9992718..9992798 238..318 405 100 Plus
Blast to na_te.dros performed on 2019-03-15 16:43:13 has no hits.

RH34107.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:44:26 Download gff for RH34107.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 6077231..6077469 1..239 99 -> Plus
chr3R 6077602..6077680 240..318 98 -> Plus
chr3R 6077884..6078410 319..845 99 -> Plus
chr3R 6078511..6079244 846..1579 99 -> Plus
chr3R 6079303..6080632 1580..2909 99 -> Plus
chr3R 6080694..6080967 2910..3183 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:45:11 Download gff for RH34107.complete
Subject Subject Range Query Range Percent Splice Strand
CG3999-RA 1..2958 63..3020 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:53:54 Download gff for RH34107.complete
Subject Subject Range Query Range Percent Splice Strand
CG3999-RA 1..2958 63..3020 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:08:40 Download gff for RH34107.complete
Subject Subject Range Query Range Percent Splice Strand
CG3999-RA 1..2958 63..3020 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:44:59 Download gff for RH34107.complete
Subject Subject Range Query Range Percent Splice Strand
CG3999-RA 1..2958 63..3020 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:47:26 Download gff for RH34107.complete
Subject Subject Range Query Range Percent Splice Strand
CG3999-RA 1..2958 63..3020 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:08:33 Download gff for RH34107.complete
Subject Subject Range Query Range Percent Splice Strand
CG3999-RA 2..3197 2..3197 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:53:54 Download gff for RH34107.complete
Subject Subject Range Query Range Percent Splice Strand
CG3999-RA 2..3197 2..3197 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:08:40 Download gff for RH34107.complete
Subject Subject Range Query Range Percent Splice Strand
CG3999-RA 2..3197 2..3197 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:44:59 Download gff for RH34107.complete
Subject Subject Range Query Range Percent Splice Strand
CG3999-RA 2..3197 2..3197 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:47:26 Download gff for RH34107.complete
Subject Subject Range Query Range Percent Splice Strand
CG3999-RA 2..3197 2..3197 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:44:26 Download gff for RH34107.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10252171..10252697 319..845 99 -> Plus
3R 10251518..10251756 1..239 99 -> Plus
3R 10251889..10251967 240..318 100 -> Plus
3R 10252798..10253531 846..1579 100 -> Plus
3R 10253590..10254919 1580..2909 99 -> Plus
3R 10254981..10255268 2910..3197 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:44:26 Download gff for RH34107.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10252171..10252697 319..845 99 -> Plus
3R 10251518..10251756 1..239 99 -> Plus
3R 10251889..10251967 240..318 100 -> Plus
3R 10252798..10253531 846..1579 100 -> Plus
3R 10253590..10254919 1580..2909 99 -> Plus
3R 10254981..10255268 2910..3197 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:44:26 Download gff for RH34107.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10252171..10252697 319..845 99 -> Plus
3R 10251518..10251756 1..239 99 -> Plus
3R 10251889..10251967 240..318 100 -> Plus
3R 10252798..10253531 846..1579 100 -> Plus
3R 10253590..10254919 1580..2909 99 -> Plus
3R 10254981..10255268 2910..3197 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:08:40 Download gff for RH34107.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6077240..6077478 1..239 99 -> Plus
arm_3R 6077611..6077689 240..318 100 -> Plus
arm_3R 6077893..6078419 319..845 99 -> Plus
arm_3R 6078520..6079253 846..1579 100 -> Plus
arm_3R 6079312..6080641 1580..2909 99 -> Plus
arm_3R 6080703..6080990 2910..3197 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:15:54 Download gff for RH34107.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9992349..9992587 1..239 99 -> Plus
3R 9992720..9992798 240..318 100 -> Plus
3R 9993002..9993528 319..845 99 -> Plus
3R 9993629..9994362 846..1579 100 -> Plus
3R 9994421..9995750 1580..2909 99 -> Plus
3R 9995812..9996099 2910..3197 100   Plus

RH34107.pep Sequence

Translation from 62 to 3019

> RH34107.pep
MQRFLGRSSQSLLLRCGHRYLATTPVEEVIFPTKSDFPSRHIGPRKTDVV
AMLDTLGFKSLAELTEKAVPQSIQLKRELDLDKPLNEHELIRRIRDISLK
NQLWRSYIGMGYHNCHVPHTIIRNMFENPGWTTQYTPYQPEIAQGRLESL
LNYQTLVTDLTGLDVANASLLDEGTAAAEAMCLATRHNKRKKLYLSNRVH
PQTLSVVKTRTEALELEIVVGPIEQADLPSRELAGILLQYPDTYGDVKDF
EDIAALAKKNGTLVVVATDLLSLTLLRPPAEFGADIAVGTSQRLGVPLGY
GGPHAGFFACKQSLVRLMPGRMIGVTRDMDGNDAYRLALQTREQHIRRDK
ATSNICTAQALLANMSAMYAIYHGPEGLKAMANRIHHFTLTLQTGVLGAG
HEVINKNFFDTLHIRLGGGQSLEDLKERAEHKRINLRYLEDDTVGVALDE
TVSVADVDDLLWVFKAEASVEHILARKDVLKNSIENSKFLRTSPYLQHPI
FQSYHSESRMVRYMKKLENKDISLVHSMIPLGSCTMKLNSTTEMMPCSFR
HFTDIHPFAPVEQAQGFHQMFKELEHDLCEITGYDRISFQPNSGAQGEYA
GLRAIRSYHEHRNEGHRNICLIPISAHGTNPASAQMAGMKVEPIRILSNG
SIDMAHLRAKAEEHAHELSCLMITYPSTMGVFEETVADICTLIHKHGGQV
YLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKA
HLAPYLPGHPVVSPLSSEEHSFGVVSAAPFGSSAILPISWSYIKLMGSRG
LKRATQVAILNANYMSKRLEQHYKTLYKAPNSQLVAHEFILDIRDLKKSA
NIEAVDVAKRLMDYGFHAPTMSWPVAGTLMIEPTESEDKEELDRFCDAMI
SIREEIAEIEAGRMDKAVNPLKMSPHTQAQVISDKWDRPYTREQAAFPAI
FVKPDAKIWPTVGRIDDAYGDKHLVCTCPPILPDL*

RH34107.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:06:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17458-PA 985 GF17458-PA 1..985 1..985 5170 96.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:06:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17487-PA 987 GG17487-PA 1..987 1..985 5260 98.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:06:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19120-PA 985 GH19120-PA 1..985 1..985 4822 92.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG3999-PB 985 CG3999-PB 1..985 1..985 5156 100 Plus
CG3999-PA 985 CG3999-PA 1..985 1..985 5156 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:06:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23575-PA 985 GI23575-PA 1..985 1..985 4786 91.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:06:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23685-PA 985 GL23685-PA 1..985 1..985 4939 94.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:06:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26702-PA 985 GA26702-PA 1..985 1..985 4937 94.5 Plus
Dpse\GA26699-PA 985 GA26699-PA 1..985 1..985 4919 94.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:06:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23871-PA 887 GM23871-PA 401..887 499..985 2664 99.6 Plus
Dsec\GM23871-PA 887 GM23871-PA 1..400 1..400 2099 98.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:06:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18680-PA 44 GD18680-PA 9..44 950..985 216 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:07:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23552-PA 985 GJ23552-PA 1..985 1..985 4840 93 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:07:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22634-PA 988 GK22634-PA 1..988 1..985 4935 93.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:07:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26022-PA 985 GE26022-PA 1..985 1..985 5290 99.1 Plus

RH34107.hyp Sequence

Translation from 62 to 3019

> RH34107.hyp
MQRFLGRSSQSLLLRCGHRYLATTPVEEVIFPTKSDFPSRHIGPRKTDVV
AMLDTLGFKSLAELTEKAVPQSIQLKRELDLDKPLNEHELIRRIRDISLK
NQLWRSYIGMGYHNCHVPHTIIRNMFENPGWTTQYTPYQPEIAQGRLESL
LNYQTLVTDLTGLDVANASLLDEGTAAAEAMCLATRHNKRKKLYLSNRVH
PQTLSVVKTRTEALELEIVVGPIEQADLPSRELAGILLQYPDTYGDVKDF
EDIAALAKKNGTLVVVATDLLSLTLLRPPAEFGADIAVGTSQRLGVPLGY
GGPHAGFFACKQSLVRLMPGRMIGVTRDMDGNDAYRLALQTREQHIRRDK
ATSNICTAQALLANMSAMYAIYHGPEGLKAMANRIHHFTLTLQTGVLGAG
HEVINKNFFDTLHIRLGGGQSLEDLKERAEHKRINLRYLEDDTVGVALDE
TVSVADVDDLLWVFKAEASVEHILARKDVLKNSIENSKFLRTSPYLQHPI
FQSYHSESRMVRYMKKLENKDISLVHSMIPLGSCTMKLNSTTEMMPCSFR
HFTDIHPFAPVEQAQGFHQMFKELEHDLCEITGYDRISFQPNSGAQGEYA
GLRAIRSYHEHRNEGHRNICLIPISAHGTNPASAQMAGMKVEPIRILSNG
SIDMAHLRAKAEEHAHELSCLMITYPSTMGVFEETVADICTLIHKHGGQV
YLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKA
HLAPYLPGHPVVSPLSSEEHSFGVVSAAPFGSSAILPISWSYIKLMGSRG
LKRATQVAILNANYMSKRLEQHYKTLYKAPNSQLVAHEFILDIRDLKKSA
NIEAVDVAKRLMDYGFHAPTMSWPVAGTLMIEPTESEDKEELDRFCDAMI
SIREEIAEIEAGRMDKAVNPLKMSPHTQAQVISDKWDRPYTREQAAFPAI
FVKPDAKIWPTVGRIDDAYGDKHLVCTCPPILPDL*

RH34107.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:25:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG3999-PB 985 CG3999-PB 1..985 1..985 5156 100 Plus
CG3999-PA 985 CG3999-PA 1..985 1..985 5156 100 Plus