Clone RH35407 Report

Search the DGRC for RH35407

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:354
Well:7
Vector:pFlc-1
Associated Gene/TranscriptCG8329-RA
Protein status:RH35407.pep: gold
Sequenced Size:927

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8329 2003-01-01 Sim4 clustering to Release 3
CG8329 2005-05-17 Blastp of sequenced clone
CG8329 2008-04-29 Release 5.5 accounting
CG8329 2008-08-15 Release 5.9 accounting
CG8329 2008-12-18 5.12 accounting

Clone Sequence Records

RH35407.complete Sequence

927 bp (927 high quality bases) assembled on 2005-05-17

GenBank Submission: BT022726

> RH35407.complete
GATTTTAATTTTAAGCATGTCTAAAAAGCTGGTATTGTTGCTATTGTTTG
TTGCCACTGTCTGTGCCCACAGGAATCGCAATCGTACGGCTCATCATGGT
GGTGGTCCCAAGGACATCATTGTAAATGGCTATCCAGCCTACGAAGGCAA
GGCACCATATGCTGTGGGCCTGCGAATGAACAATGGAGCCGTGGGCGGAG
GTTCCGTAATTGGAAACAATTGGGTCCTGACCGCTGCCCATTGCCTGACC
ACCGATTCCGTGACCATACACTACGGCTCGAATCGTGCCTGGAACGGTCA
GCTTCAGCATACGGTGAACAAGAATAACTTCTTTCGCCATCCAGGATATC
CCAATAGCGCTGGTCACGACATCGGACTCATTCGCACCCCGTACGTCAGC
TTCACCAATCTGATCAACAAAGTTTCGCTGCCCAAGTTCAGCCAAAAAGG
TGAGCGTTTCGAGAACTGGTGGTGCGTGGCCTGCGGCTGGGGAGGAATGG
CCAATGGAGGATTGGCCGACTGGCTGCAATGCATGGACGTGCAAGTCATT
AGCAACGGAGAATGCGCCAGGTCATACGGATCGGTGGCCAGCACTGATAT
GTGCACCCGGGCCACCGATGGCAAGTCCGTGTGCGGTGGCGACTCTGGCG
GAGCACTGGTCACTCACGACAATCCCATTCAAGTGGGCGTTATCACCTTT
GCATCCATCGGCTGCAAGTCTGGACCATCGGGCTACACCCGTGTGTCCGA
TCACTTGGACTGGATCCGAGAGAAGTCGGGAATTGCCTATTACTAACAAG
GAGACTCGATCAATGATGAATCTAAATCAAATCATTGTCTATCCAGATAT
TCTGATATTTTTGTTCCACTTTAAATGAACCTATGTAAATATATATATAT
CCACATTGAGCGAAAAAAAAAAAAAAA

RH35407.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:54:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG8329-RA 912 CG8329-RA 3..910 4..911 4540 100 Plus
CG18179-RA 868 CG18179-RA 500..702 470..672 370 78.8 Plus
CG18180-RA 898 CG18180-RA 488..786 470..768 370 74.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:57:14
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 9630007..9630899 4..896 4330 99 Plus
chr3L 24539361 chr3L 9631556..9631860 368..672 400 75.4 Plus
chr3L 24539361 chr3L 9633401..9633699 470..768 340 74.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:27:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9638114..9639021 4..911 4540 100 Plus
3L 28110227 3L 9639670..9640070 368..768 430 73.8 Plus
3L 28110227 3L 9641503..9641801 470..768 370 74.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:43:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 9631214..9632121 4..911 4540 100 Plus
3L 28103327 3L 9632872..9633074 470..672 370 78.8 Plus
3L 28103327 3L 9634603..9634901 470..768 370 74.9 Plus
Blast to na_te.dros performed on 2019-03-16 19:57:13 has no hits.

RH35407.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:58:16 Download gff for RH35407.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 9630005..9630903 1..904 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:45:21 Download gff for RH35407.complete
Subject Subject Range Query Range Percent Splice Strand
CG8329-RA 1..780 17..796 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:27:28 Download gff for RH35407.complete
Subject Subject Range Query Range Percent Splice Strand
CG8329-RA 1..780 17..796 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:36:06 Download gff for RH35407.complete
Subject Subject Range Query Range Percent Splice Strand
CG8329-RA 1..780 17..796 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:11:27 Download gff for RH35407.complete
Subject Subject Range Query Range Percent Splice Strand
CG8329-RA 1..780 17..796 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:47:05 Download gff for RH35407.complete
Subject Subject Range Query Range Percent Splice Strand
CG8329-RA 1..780 17..796 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:30:39 Download gff for RH35407.complete
Subject Subject Range Query Range Percent Splice Strand
CG8329-RA 1..910 1..912 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:27:28 Download gff for RH35407.complete
Subject Subject Range Query Range Percent Splice Strand
CG8329-RA 1..910 1..911 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:36:06 Download gff for RH35407.complete
Subject Subject Range Query Range Percent Splice Strand
CG8329-RA 1..910 1..911 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:11:27 Download gff for RH35407.complete
Subject Subject Range Query Range Percent Splice Strand
CG8329-RA 1..910 1..912 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:05 Download gff for RH35407.complete
Subject Subject Range Query Range Percent Splice Strand
CG8329-RA 1..910 1..911 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:58:16 Download gff for RH35407.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9638112..9639021 1..912 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:58:16 Download gff for RH35407.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9638112..9639021 1..912 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:58:16 Download gff for RH35407.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9638112..9639021 1..912 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:36:06 Download gff for RH35407.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9631212..9632121 1..912 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:48:03 Download gff for RH35407.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9631212..9632121 1..912 99   Plus

RH35407.hyp Sequence

Translation from 0 to 795

> RH35407.hyp
DLILSMSKKLVLLLLFVATVCAHRNRNRTAHHGGGPKDIIVNGYPAYEGK
APYAVGLRMNNGAVGGGSVIGNNWVLTAAHCLTTDSVTIHYGSNRAWNGQ
LQHTVNKNNFFRHPGYPNSAGHDIGLIRTPYVSFTNLINKVSLPKFSQKG
ERFENWWCVACGWGGMANGGLADWLQCMDVQVISNGECARSYGSVASTDM
CTRATDGKSVCGGDSGGALVTHDNPIQVGVITFASIGCKSGPSGYTRVSD
HLDWIREKSGIAYY*

RH35407.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:18:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG8329-PA 259 CG8329-PA 1..259 6..264 1423 100 Plus
CG18180-PA 264 CG18180-PA 2..264 9..263 874 61.6 Plus
CG18179-PA 268 CG18179-PA 2..268 9..263 872 62.9 Plus
Jon25Bi-PB 266 CG8867-PB 2..266 8..264 644 49.1 Plus
Jon66Cii-PA 262 CG7170-PA 40..262 40..264 622 52 Plus

RH35407.pep Sequence

Translation from 1 to 795

> RH35407.pep
ILILSMSKKLVLLLLFVATVCAHRNRNRTAHHGGGPKDIIVNGYPAYEGK
APYAVGLRMNNGAVGGGSVIGNNWVLTAAHCLTTDSVTIHYGSNRAWNGQ
LQHTVNKNNFFRHPGYPNSAGHDIGLIRTPYVSFTNLINKVSLPKFSQKG
ERFENWWCVACGWGGMANGGLADWLQCMDVQVISNGECARSYGSVASTDM
CTRATDGKSVCGGDSGGALVTHDNPIQVGVITFASIGCKSGPSGYTRVSD
HLDWIREKSGIAYY*

RH35407.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:26:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25147-PA 254 GF25147-PA 2..254 9..264 1138 82.8 Plus
Dana\GF25146-PA 240 GF25146-PA 9..240 35..264 984 78 Plus
Dana\GF25148-PA 262 GF25148-PA 36..262 36..263 799 64.8 Plus
Dana\GF25149-PA 262 GF25149-PA 36..262 36..263 791 64.4 Plus
Dana\GF21534-PA 268 GF21534-PA 30..268 36..264 587 51 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:26:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15395-PA 258 GG15395-PA 1..258 6..264 1331 96.1 Plus
Dere\GG15396-PA 264 GG15396-PA 23..264 27..263 845 66.1 Plus
Dere\GG24336-PA 266 GG24336-PA 24..266 36..264 598 50.2 Plus
Dere\GG14309-PA 260 GG14309-PA 24..260 36..264 573 49.8 Plus
Dere\GG24338-PA 258 GG24338-PA 37..258 40..263 570 50.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16311-PA 263 GH16311-PA 28..263 36..264 778 65.7 Plus
Dgri\GH16447-PA 265 GH16447-PA 2..265 8..264 651 49.6 Plus
Dgri\GH14856-PA 260 GH14856-PA 1..260 4..263 570 44.1 Plus
Dgri\GH15026-PA 259 GH15026-PA 24..259 36..263 567 49.6 Plus
Dgri\GH16310-PA 260 GH16310-PA 2..260 9..263 561 46.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:24:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG8329-PA 259 CG8329-PA 1..259 6..264 1423 100 Plus
CG18180-PA 264 CG18180-PA 2..264 9..263 874 61.6 Plus
CG18179-PA 268 CG18179-PA 2..268 9..263 872 62.9 Plus
Jon25Bi-PB 266 CG8867-PB 2..266 8..264 644 49.1 Plus
Jon66Cii-PA 262 CG7170-PA 40..262 40..264 622 52 Plus
Jon25Biii-PA 258 CG8871-PA 37..258 40..263 607 50.9 Plus
Jon66Ci-PA 260 CG7118-PA 5..260 10..264 605 46.8 Plus
Jon25Bii-PB 276 CG8869-PB 2..276 9..263 563 45.8 Plus
Jon25Bii-PA 276 CG8869-PA 2..276 9..263 563 45.8 Plus
Jon99Fii-PA 267 CG2229-PA 38..267 40..263 558 50.2 Plus
Jon99Fi-PA 267 CG18030-PA 38..267 40..263 555 49.8 Plus
Jon99Cii-PA 265 CG31034-PA 30..265 37..263 551 49.8 Plus
Jon99Ciii-PB 265 CG31362-PB 30..265 37..263 551 49.8 Plus
Jon99Ciii-PA 265 CG31362-PA 30..265 37..263 551 49.8 Plus
Jon44E-PB 271 CG8579-PB 41..271 40..263 551 46.8 Plus
Jon44E-PA 271 CG8579-PA 41..271 40..263 551 46.8 Plus
Jon65Ai-PB 262 CG10475-PB 38..262 40..263 523 44.6 Plus
Jon65Ai-PA 262 CG10475-PA 38..262 40..263 523 44.6 Plus
Jon65Aii-PA 259 CG6580-PA 37..259 40..263 502 46.6 Plus
CG3088-PA 252 CG3088-PA 25..252 36..263 497 42.1 Plus
Jon99Ci-PA 272 CG31039-PA 35..272 34..263 474 41 Plus
Jon65Aiii-PA 274 CG6483-PA 2..274 8..263 418 38 Plus
CG10477-PB 272 CG10477-PB 2..272 8..263 416 39.7 Plus
CG10477-PA 272 CG10477-PA 2..272 8..263 416 39.7 Plus
Jon65Aiv-PA 271 CG6467-PA 2..271 8..261 414 39.5 Plus
yip7-PA 270 CG6457-PA 6..270 1..261 381 38.2 Plus
sphinx1-PB 253 CG32383-PB 2..253 9..263 339 31.9 Plus
sphinx2-PC 253 CG32382-PC 2..253 9..263 336 31.6 Plus
sphinx2-PB 253 CG32382-PB 2..253 9..263 336 31.6 Plus
CG11529-PA 287 CG11529-PA 60..260 66..260 308 36.8 Plus
CG10472-PA 290 CG10472-PA 43..285 36..261 297 34.3 Plus
CG7542-PB 270 CG7542-PB 27..260 40..255 289 34.2 Plus
CG7542-PA 270 CG7542-PA 27..260 40..255 289 34.2 Plus
CG6592-PA 438 CG6592-PA 135..364 52..262 285 33 Plus
Jon74E-PC 271 CG6298-PC 26..270 32..263 263 33.1 Plus
CG8952-PA 276 CG8952-PA 38..275 40..262 253 33.6 Plus
l(2)k05911-PC 639 CG31728-PC 400..634 40..255 245 33.1 Plus
CG3355-PA 314 CG3355-PA 76..311 40..264 227 30.5 Plus
CG9676-PA 251 CG9676-PA 28..251 40..261 226 30.5 Plus
CG32808-PA 284 CG32808-PA 30..257 40..257 224 31.6 Plus
CG11912-PA 271 CG11912-PA 24..266 34..257 218 32.5 Plus
Phae1-PB 270 CG16996-PB 30..263 34..255 214 28.7 Plus
Phae1-PA 270 CG16996-PA 30..263 34..255 214 28.7 Plus
CG16749-PA 265 CG16749-PA 22..259 32..257 210 28.6 Plus
CG6462-PA 319 CG6462-PA 77..317 40..261 210 30.2 Plus
alphaTry-PA 256 CG18444-PA 2..249 10..255 209 30 Plus
CG6865-PB 285 CG6865-PB 8..279 1..257 209 28.5 Plus
CG10405-PB 268 CG10405-PB 33..263 36..256 207 29.1 Plus
CG4613-PC 374 CG4613-PC 137..362 40..255 205 31.1 Plus
CG4613-PB 374 CG4613-PB 137..362 40..255 205 31.1 Plus
CG3916-PA 267 CG3916-PA 31..259 41..257 203 28.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13256-PA 268 GI13256-PA 1..268 6..264 809 59.3 Plus
Dmoj\GI13255-PA 267 GI13255-PA 1..267 6..263 771 57.7 Plus
Dmoj\GI13257-PA 265 GI13257-PA 7..264 12..263 650 49.4 Plus
Dmoj\GI16705-PA 258 GI16705-PA 2..258 9..264 604 48.9 Plus
Dmoj\GI16680-PA 259 GI16680-PA 3..259 11..264 594 47.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:26:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12710-PA 260 GL12710-PA 2..260 9..264 1026 74.3 Plus
Dper\GL12711-PA 261 GL12711-PA 29..261 37..264 920 71.7 Plus
Dper\GL19488-PA 258 GL19488-PA 37..258 40..263 576 51.8 Plus
Dper\GL26493-PA 265 GL26493-PA 28..265 36..263 551 49.6 Plus
Dper\GL24701-PA 239 GL24701-PA 3..239 36..263 547 48.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:26:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20992-PA 260 GA20992-PA 2..260 9..264 1025 74.3 Plus
Dpse\GA14830-PA 261 GA14830-PA 29..261 37..264 925 72.5 Plus
Dpse\GA21381-PA 258 GA21381-PA 37..258 40..263 576 51.8 Plus
Dpse\GA21379-PA 265 GA21379-PA 28..265 36..263 551 49.6 Plus
Dpse\GA20115-PA 260 GA20115-PA 24..260 36..263 546 48.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:26:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25169-PA 259 GM25169-PA 1..259 6..264 1348 96.5 Plus
Dsec\GM25170-PA 268 GM25170-PA 2..268 9..263 860 63.7 Plus
Dsec\GM24943-PA 262 GM24943-PA 1..262 6..264 587 46.6 Plus
Dsec\GM25051-PA 260 GM25051-PA 24..260 36..264 563 48.6 Plus
Dsec\GM18058-PA 252 GM18058-PA 34..252 37..263 518 46.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:26:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14200-PA 444 GD14200-PA 1..256 6..261 1306 95.7 Plus
Dsim\GD14201-PA 264 GD14201-PA 23..264 27..263 836 64.5 Plus
Dsim\GD14200-PA 444 GD14200-PA 253..444 72..263 751 70.8 Plus
Dsim\GD22676-PA 266 GD22676-PA 28..266 36..264 602 51 Plus
Dsim\GD21522-PA 267 GD21522-PA 38..267 40..263 529 50.2 Plus
Dsim\GD11483-PA 269 GD11483-PA 34..269 37..263 524 50.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:26:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12026-PA 266 GJ12026-PA 31..266 36..264 772 61.4 Plus
Dvir\GJ12027-PA 273 GJ12027-PA 16..256 25..261 588 50.4 Plus
Dvir\GJ12443-PA 257 GJ12443-PA 1..257 6..263 581 47.7 Plus
Dvir\GJ14050-PA 255 GJ14050-PA 24..255 39..263 575 49.6 Plus
Dvir\GJ12442-PA 264 GJ12442-PA 24..264 36..264 551 48.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:26:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16622-PA 258 GK16622-PA 1..258 10..264 802 61.5 Plus
Dwil\GK17278-PA 266 GK17278-PA 2..266 8..264 619 48 Plus
Dwil\GK16899-PA 269 GK16899-PA 2..269 8..264 606 46.3 Plus
Dwil\GK17287-PA 262 GK17287-PA 29..262 36..263 591 50.4 Plus
Dwil\GK17285-PA 260 GK17285-PA 40..260 40..263 588 52.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:26:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20860-PA 258 GE20860-PA 1..258 6..264 1326 96.1 Plus
Dyak\GE20861-PA 268 GE20861-PA 2..268 9..263 853 63.3 Plus
Dyak\GE20862-PA 264 GE20862-PA 23..264 27..263 847 64.9 Plus
Dyak\Ser4-PA 266 GE18715-PA 24..266 36..264 596 50.2 Plus
Dyak\GE21311-PA 264 GE21311-PA 40..264 40..264 571 50.6 Plus