BDGP Sequence Production Resources |
Search the DGRC for RH35959
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 359 |
Well: | 59 |
Vector: | pFlc-1 |
Associated Gene/Transcript | l(2)k09913-RD |
Protein status: | RH35959.pep: gold |
Preliminary Size: | 1900 |
Sequenced Size: | 1459 |
Gene | Date | Evidence |
---|---|---|
CG3082 | 2002-10-18 | Blastp of sequenced clone |
l(2)k09913 | 2008-04-29 | Release 5.5 accounting |
l(2)k09913 | 2008-08-15 | Release 5.9 accounting |
l(2)k09913 | 2008-12-18 | 5.12 accounting |
1459 bp (1459 high quality bases) assembled on 2002-10-18
GenBank Submission: BT001813
> RH35959.complete GACACACACACACATCAGCTGAAATAACTATGTACCTTCCATGGGGATTG GGAATGTAAGCTCGCCTCAATTCCGCTCAACTATCCGTGATCGTTCCACT GGATCGCTGGACTATATGCTATATAATGTGGATCAGTCAGTCGGTCAAAG TCGTTGCACCTGCTTAGTTTTATCTTCGATATGGACTTCCTAATTGAAAT AACATTACTGGTCATATTGGCAATTATACTGCTGAAGATCTATCATCGGG CGAAACGTAGTGCCATGGCGCCGTCGAACAATCGCCGGTACTTATCCTCG CAGGATATTACCAAGAACATGACCCTGTACACCAGCACCAAGACCCAAGT TGAGGTGGATCCCAAGACGCTGGCCTTCAAGAAGCCCACTGGCAACCCAC TGGTTCTCATGATGGCCTGGCTGATGGCCAAGCAGAAGCATCTGAAGAAG TATGCCCAGATCTACACTGAGATGGGATTCGATGTGGTGGTGGTGCACAT TACGCCGTGGCAGCTACTCTGGCCGGTCAAAGGATCCCAGGTGGTGGCCG CCGAGACTATTCGATTCCTGGAGAACAACAAGTCGTACGAACCCATTGTG ATGCATGGCTTCTCCGTGGGCGCCTACCAGCTGGGCGAGATCATGCTGCA GATGTCGCGCGACATGGATCGCTATGGTAGCATTCTGGACCGCTTCGTGT GCCAGGTGTGGGACAGCGCCGCCGACATCACCGAGATCCCGGTGGGCGTG CCCAAGTCGATCTTCCCGAGGAACGAGCGAATGCAGAGCGCCCTGCGCAA CTATACGCTGTACCACCTGAAGACATTCCACAACCAGGCCACCATCCACT ACATGCGCTCCAGCCAGATGTTCCACTCCACGCTGCTCAAGGCCCCGGCG CTGTTCTTCGTGTCCGACAACGATCCCATCGGTCCGCCGTCCTCCAACCA GTCCGTTCGCGAGGACTGGGAGCGTGCGAACATCAAGGTTACCTTCAAGT GCTGGGAGCGGTCCCAGCACGCCGCCCACTATATACGGCATCGCGAGGAG TACCTGCAGACGCTGTTCCAGCATCTGGAGACCTGCGGTGTCTTGGAGGC CATCGGCGTGCCGAAGCGCGCCAAGTTGTAGGTGTCTCTAACGAGGAGCG GCTGATCAGTTCAGTGATATACATTTATTCAAGAATCAATGCGATTATGA TTTTACCCTAGTTGCTAAGACCTAAAGATTAACGAGCAATGTAAAACCAA TGTCCTCTTTGAATGATTATGATCTGTGTGTCTCTCGCGAGGCAGAATCT TCAAAAGCCCGCACGGGAAATTCCTAGGCTAAGCTTAAAGTCGTATTTCA TCAACCGAGAGAAGAATGCACTACGCCTCTATATTGTTACATATATTTTG AGATCGCTGCAAAACAGCTAAATAAAGTAATTTAAATGATACGAAAAAAA AAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
l(2)k09913-RD | 1457 | l(2)k09913-RD | 2..1445 | 2..1445 | 7220 | 100 | Plus |
l(2)k09913-RA | 1915 | l(2)k09913-RA | 722..1909 | 258..1445 | 5940 | 100 | Plus |
l(2)k09913-RC | 2029 | l(2)k09913-RC | 830..2017 | 258..1445 | 5940 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 18957416..18958322 | 537..1443 | 4505 | 99.8 | Plus |
chr2R | 21145070 | chr2R | 18957072..18957355 | 259..542 | 1360 | 98.6 | Plus |
chr2R | 21145070 | chr2R | 18955871..18956127 | 2..258 | 1285 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 23070961..23071869 | 537..1445 | 4545 | 100 | Plus |
2R | 25286936 | 2R | 23070607..23070900 | 259..552 | 1425 | 99 | Plus |
2R | 25286936 | 2R | 23069406..23069662 | 2..258 | 1285 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 23072160..23073068 | 537..1445 | 4545 | 100 | Plus |
2R | 25260384 | 2R | 23071806..23072099 | 259..552 | 1425 | 98.9 | Plus |
2R | 25260384 | 2R | 23070605..23070861 | 2..258 | 1285 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 18955870..18956127 | 1..258 | 99 | -> | Plus |
chr2R | 18957072..18957353 | 259..540 | 98 | -> | Plus |
chr2R | 18957420..18958322 | 541..1443 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)k09913-RD | 1..951 | 181..1131 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)k09913-RD | 1..951 | 181..1131 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)k09913-RD | 1..951 | 181..1131 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)k09913-RD | 1..951 | 181..1131 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)k09913-RD | 1..951 | 181..1131 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)k09913-RD | 2..1443 | 2..1443 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)k09913-RD | 2..1443 | 2..1443 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)k09913-RD | 2..1443 | 2..1443 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)k09913-RD | 2..1443 | 2..1443 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)k09913-RD | 2..1443 | 2..1443 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23070607..23070888 | 259..540 | 100 | -> | Plus |
2R | 23069405..23069662 | 1..258 | 99 | -> | Plus |
2R | 23070965..23071867 | 541..1443 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23070607..23070888 | 259..540 | 100 | -> | Plus |
2R | 23069405..23069662 | 1..258 | 99 | -> | Plus |
2R | 23070965..23071867 | 541..1443 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23070607..23070888 | 259..540 | 100 | -> | Plus |
2R | 23069405..23069662 | 1..258 | 99 | -> | Plus |
2R | 23070965..23071867 | 541..1443 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 18956928..18957185 | 1..258 | 99 | -> | Plus |
arm_2R | 18958130..18958411 | 259..540 | 100 | -> | Plus |
arm_2R | 18958488..18959390 | 541..1443 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23070622..23070879 | 1..258 | 99 | -> | Plus |
2R | 23071824..23072105 | 259..540 | 100 | -> | Plus |
2R | 23072182..23073084 | 541..1443 | 100 | Plus |
Translation from 180 to 1130
> RH35959.pep MDFLIEITLLVILAIILLKIYHRAKRSAMAPSNNRRYLSSQDITKNMTLY TSTKTQVEVDPKTLAFKKPTGNPLVLMMAWLMAKQKHLKKYAQIYTEMGF DVVVVHITPWQLLWPVKGSQVVAAETIRFLENNKSYEPIVMHGFSVGAYQ LGEIMLQMSRDMDRYGSILDRFVCQVWDSAADITEIPVGVPKSIFPRNER MQSALRNYTLYHLKTFHNQATIHYMRSSQMFHSTLLKAPALFFVSDNDPI GPPSSNQSVREDWERANIKVTFKCWERSQHAAHYIRHREEYLQTLFQHLE TCGVLEAIGVPKRAKL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13561-PA | 417 | GF13561-PA | 102..417 | 1..316 | 1549 | 91.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\l(2)k09913-PA | 388 | GG22823-PA | 96..388 | 24..316 | 1534 | 94.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20830-PA | 389 | GH20830-PA | 96..389 | 23..316 | 1461 | 87.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
l(2)k09913-PD | 316 | CG3082-PD | 1..316 | 1..316 | 1652 | 100 | Plus |
l(2)k09913-PF | 388 | CG3082-PF | 96..388 | 24..316 | 1533 | 99.3 | Plus |
l(2)k09913-PE | 389 | CG3082-PE | 97..389 | 24..316 | 1533 | 99.3 | Plus |
l(2)k09913-PC | 389 | CG3082-PC | 97..389 | 24..316 | 1533 | 99.3 | Plus |
l(2)k09913-PA | 389 | CG3082-PA | 97..389 | 24..316 | 1533 | 99.3 | Plus |
l(2)k09913-PB | 389 | CG3082-PB | 97..389 | 24..316 | 1533 | 99.3 | Plus |
l(2)k09913-PI | 288 | CG3082-PI | 1..288 | 29..316 | 1522 | 100 | Plus |
l(2)k09913-PH | 288 | CG3082-PH | 1..288 | 29..316 | 1522 | 100 | Plus |
l(2)k09913-PG | 288 | CG3082-PG | 1..288 | 29..316 | 1522 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20930-PA | 394 | GI20930-PA | 104..394 | 26..316 | 1466 | 89 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11302-PA | 417 | GL11302-PA | 102..417 | 1..316 | 1562 | 90.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15913-PA | 417 | GA15913-PA | 102..417 | 1..316 | 1563 | 90.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15981-PA | 389 | GM15981-PA | 97..389 | 24..316 | 1582 | 98.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11735-PA | 336 | GD11735-PA | 21..336 | 1..316 | 1704 | 99.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20657-PA | 394 | GJ20657-PA | 105..394 | 27..316 | 1476 | 89.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK19549-PA | 392 | GK19549-PA | 93..392 | 17..316 | 1434 | 84.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\l(2)k09913-PA | 388 | GE14258-PA | 96..388 | 24..316 | 1564 | 96.2 | Plus |
Translation from 180 to 1130
> RH35959.hyp MDFLIEITLLVILAIILLKIYHRAKRSAMAPSNNRRYLSSQDITKNMTLY TSTKTQVEVDPKTLAFKKPTGNPLVLMMAWLMAKQKHLKKYAQIYTEMGF DVVVVHITPWQLLWPVKGSQVVAAETIRFLENNKSYEPIVMHGFSVGAYQ LGEIMLQMSRDMDRYGSILDRFVCQVWDSAADITEIPVGVPKSIFPRNER MQSALRNYTLYHLKTFHNQATIHYMRSSQMFHSTLLKAPALFFVSDNDPI GPPSSNQSVREDWERANIKVTFKCWERSQHAAHYIRHREEYLQTLFQHLE TCGVLEAIGVPKRAKL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
l(2)k09913-PD | 316 | CG3082-PD | 1..316 | 1..316 | 1652 | 100 | Plus |
l(2)k09913-PF | 388 | CG3082-PF | 96..388 | 24..316 | 1533 | 99.3 | Plus |
l(2)k09913-PE | 389 | CG3082-PE | 97..389 | 24..316 | 1533 | 99.3 | Plus |
l(2)k09913-PC | 389 | CG3082-PC | 97..389 | 24..316 | 1533 | 99.3 | Plus |
l(2)k09913-PA | 389 | CG3082-PA | 97..389 | 24..316 | 1533 | 99.3 | Plus |