BDGP Sequence Production Resources |
Search the DGRC for RH36157
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 361 |
Well: | 57 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Usf-RA |
Protein status: | RH36157.pep: validated full length |
Preliminary Size: | 1655 |
Sequenced Size: | 2753 |
Gene | Date | Evidence |
---|---|---|
CG17592 | 2002-01-01 | Sim4 clustering to Release 2 |
CG17592 | 2003-07-26 | Blastp of sequenced clone |
Usf | 2008-04-29 | Release 5.5 accounting |
Usf | 2008-08-15 | Release 5.9 accounting |
Usf | 2008-12-18 | 5.12 accounting |
2753 bp (2753 high quality bases) assembled on 2003-07-26
GenBank Submission: BT009958
> RH36157.complete GCCTTGAATTGCTGGCGAAGCATTGTTCCAATCGGCGGCGATCCACTCCG GTGACCCCGAACTCCTCTGCCGTCTGATGGTACTGGCGAAGGGGATCCTC CAGGCGAAGCAGCGTGTCCGTTACATCGAAGGTCACCAGGCGAAAGCGTT TCAAATTCGCAACAAATTGCGAAGTCAACGACATTTTGGCCAACAGTGTG GTATTGTTTGTCCACTAGATATTACGTATATGCATTTGGTATATTTTAAT TTTCGAAAAACCTCCAAAAACACATTTGCTTAGTTGAGAATCGTTTGTTG AATTAAATGAAGATGCTTTTCTTCATTTTAAAGTTACAGATTTTCTACTT GTATGAAGAGTTTATTTTTTTTTTTGAATACAAACAATTATTTGGAAATG CCGCAAAAATACATTGCCTAAATTCTGGTATTTTTCGCAACAACTGTACT GTGTGTATTCGTCGGCATATATTTGCTGCCCGCCGGCGGGCACACTAAGC CAAACGAAAATAATTTTGTTACAAAAAAAATCAACAAATCGTATTGTTAA ATGGCCGTGCGAACACGAACGACCATAAATCCGCCGCAGCGCTCGATTTC AAATCAAATCCTCGAGGCAGTCGGTAGTTAATAATACCGCAGAGCGGCCA GATCGGGGGATATCTACCATCCATATCCGTGTATCCTCCAACTAGAGATC GGAGCAAATAGTGGAGGAGATCCCGAATAGATCCGGAGTTACGTGATTCC CGGCGACACGGATACGATTCTGGCTGGGATTGGGCTATTGGAATTGGTGT ACTGCTAACGGCGGATCATCGATGCAACAATGAATGTTCACAAGCGGCCA CGTCTGAATATGGAATTCGGCTCCTCCACCAGCAATACCAACACTTCCAC ATCCCCGTCCTCCGTAAATATCAGCAATGCGAATCCAACAGCTGGACCTG GCCTCATGACCATTACCAATCACCACACCGCTGATTTGTCAGAGGCCCTG GTCCACAGTTCCTTTGCCAATGGTCAGCAAAGTCTGATTCTCACCAGCGA CACGGGAAATCCGCTGATGAATAGCCAAGGTGCTCAGATATTTCTCACCA TTTGCGGAGACGAGAACTCGGACGATTCGCAGGAGTACTATACGATTAAA CAGGAACCGGGATGTGATCTAGATATCCATTCGCTGCTGCCTAGCAATTT GCAGCTGCCCAACAATCTGCAGCTGCCCACTGGCTGTGAGATATATTTGG TCAAGGAAACCGGCAGCTTAATGGGTGAGCCGCCGACGAAGGCGGCCATC AAGCTGGAACTAGATACGCTAAGCGAAAAGCCGCTCCTTCCATCTGTTAC AACTTCCTCCAGCACACAGTCCGCGGTAATAACCGCCCAGACCGTGAATC CTCCCATTCCAGGTAACATCAACACCACCACCAGCACCACTAGCACCACC ACCACCACCAGTGTCCTGTATGGCTCCCATGGCAATGGTCATGGCCATGG CCATGCTCACGCCCAAGCCCGATCCCAGCCAGAATCAGCTGGCCAAACAC CATCCAGCAAACTGGAGGCGTACAAGAAACGCGATGATAAACGTCGTGCC ACGCACAACGAGGTCGAACGCCGGCGCCGCGACAAGATCAACAGCTGGAT CTTCAAGCTCAAGGAGATGCTGCCCAGTCTGAGCTCCAGCTCCAGTTTCA GCGAGGCCAGCACGAGTCCCAGCACCAGCGGAAGTACGAGTACCAACGGA AGTAGCCATTCCAAAGGCAATGCCAGCAGTTCCAGCGGACGAGCGCCGCC CAATGACTCCAAATCGCAGATCCTGATCAAGGCATGCGAGTACATCAAGA GCATGCAGGGCGAGATTGACACGTGAGTGGAGACGGGTTTGTAGGGGGGA AACCACTGAATCAGAAATCCACAAATATTGTCCGCTATAAGTTGCTGTAC TACAGTTATATATACAGCTATATAACTTTTTTGACTTGTTAATGGTCTTA AAAAATGAGTTTGCTTATAGATCTTAATCAACTCCATTCGCTCAATTGAG CTTACATCATGTATCGATCGCATACGGTTAGGAATAAAGTTACCCAAAGG GCGGACACTTGATCTTTCCCACTTTTTCCGTAGAAATGCGTACTTAAAGT GCTGATATAGGGCTGGTGTTATCTTTTTGCAAAACAAAATCCCCATTTTG GAGCGGTTCTTTTTCGCCACTATCTCGTGCAATATGAGCTGGACTCTCGA ATGTCCCTGTGTCACTCAAGTCTTGAACACAACACTCTCTCACACTGATC GAATGCGGTTTCCACCCAAACAAAACCCAACAAAATCATACAAAGCCAAT CAAACACCTGATCCACCGATTCACCGATCACCAAACATAAACAAACCAAT TACTCAACTTTGTCTATCCCCACCAATAAACAGGCTGCGCGACTGTCTAA GGGAGACGGATAGCCTAAGGGCCAGCAACCAGGCGCTGCGCGAGGAACTT GATCGCCTGAAGCGTCAGCAGCAGCTCCAGGAACGCTTCCACACGGCCGG CGGAAGATCGACGTTTAATGTTACCCTAAATTCGCTGAACAGTTCCGCGA CCAGTGATCTATTCGAGGGAATCGATACGACACCCAATCTGGCCGCCGTC TCGTCGCTGGGATTCGGCAAGCGTGGCCTGCTGATCAGCGATTTTGATGA GTAAACAAAATCTGCCTGCGAAATAGGAGTGGATAGACAAAAAAAAAAAA AAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 4439407..4442154 | 2738..1 | 13190 | 98.9 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 4546505..4549258 | 2753..1 | 13690 | 99.9 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 4554603..4557356 | 2753..1 | 13700 | 99.8 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 4439407..4442154 | 1..2738 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Usf-RA | 1..1047 | 830..1876 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Usf-RB | 1..1044 | 830..1873 | 100 | == | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Usf-RB | 1..1044 | 830..1873 | 100 | == | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Usf-RA | 1..1047 | 830..1876 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Usf-RB | 1..1044 | 830..1873 | 100 | == | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Usf-RA | 1..2739 | 1..2738 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Usf-RB | 1..1385 | 489..1873 | 100 | == | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Usf-RB | 1..1385 | 489..1873 | 100 | == | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Usf-RA | 1..2739 | 1..2738 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Usf-RB | 1..1410 | 464..1873 | 100 | == | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 4546520..4549258 | 1..2738 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 4546520..4549258 | 1..2738 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 4546520..4549258 | 1..2738 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 4440553..4443291 | 1..2738 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 4554618..4557356 | 1..2738 | 99 | Minus |
Translation from 829 to 1875
> RH36157.pep MNVHKRPRLNMEFGSSTSNTNTSTSPSSVNISNANPTAGPGLMTITNHHT ADLSEALVHSSFANGQQSLILTSDTGNPLMNSQGAQIFLTICGDENSDDS QEYYTIKQEPGCDLDIHSLLPSNLQLPNNLQLPTGCEIYLVKETGSLMGE PPTKAAIKLELDTLSEKPLLPSVTTSSSTQSAVITAQTVNPPIPGNINTT TSTTSTTTTTSVLYGSHGNGHGHGHAHAQARSQPESAGQTPSSKLEAYKK RDDKRRATHNEVERRRRDKINSWIFKLKEMLPSLSSSSSFSEASTSPSTS GSTSTNGSSHSKGNASSSSGRAPPNDSKSQILIKACEYIKSMQGEIDT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF19532-PA | 392 | GF19532-PA | 1..302 | 1..348 | 683 | 50 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18536-PA | 419 | GG18536-PA | 1..330 | 1..348 | 1184 | 75.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24300-PA | 429 | GH24300-PA | 1..340 | 1..347 | 494 | 39 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Usf-PC | 437 | CG17592-PC | 1..348 | 1..348 | 1787 | 100 | Plus |
Usf-PB | 437 | CG17592-PB | 1..348 | 1..348 | 1787 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11046-PA | 407 | GI11046-PA | 224..320 | 244..348 | 331 | 59 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL19758-PA | 493 | GL19758-PA | 288..397 | 244..347 | 332 | 64.9 | Plus |
Dper\GL19758-PA | 493 | GL19758-PA | 40..196 | 52..225 | 291 | 43.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14568-PA | 492 | GA14568-PA | 287..396 | 244..347 | 333 | 64.9 | Plus |
Dpse\GA14568-PA | 492 | GA14568-PA | 40..196 | 52..225 | 290 | 43.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12686-PA | 423 | GM12686-PA | 1..334 | 1..348 | 1363 | 89.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16293-PA | 598 | GD16293-PA | 1..342 | 1..348 | 1401 | 92 | Plus |
Dsim\GD16293-PA | 598 | GD16293-PA | 342..509 | 178..348 | 515 | 89 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17043-PA | 421 | GJ17043-PA | 49..333 | 56..347 | 484 | 45.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15417-PA | 766 | GK15417-PA | 573..668 | 247..347 | 323 | 64.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16852-PA | 422 | GE16852-PA | 1..333 | 1..348 | 1255 | 76.7 | Plus |
Translation from 829 to 1875
> RH36157.hyp MNVHKRPRLNMEFGSSTSNTNTSTSPSSVNISNANPTAGPGLMTITNHHT ADLSEALVHSSFANGQQSLILTSDTGNPLMNSQGAQIFLTICGDENSDDS QEYYTIKQEPGCDLDIHSLLPSNLQLPNNLQLPTGCEIYLVKETGSLMGE PPTKAAIKLELDTLSEKPLLPSVTTSSSTQSAVITAQTVNPPIPGNINTT TSTTSTTTTTSVLYGSHGNGHGHGHAHAQARSQPESAGQTPSSKLEAYKK RDDKRRATHNEVERRRRDKINSWIFKLKEMLPSLSSSSSFSEASTSPSTS GSTSTNGSSHSKGNASSSSGRAPPNDSKSQILIKACEYIKSMQGEIDT*