Clone RH36507 Report

Search the DGRC for RH36507

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:365
Well:7
Vector:pFlc-1
Associated Gene/TranscriptAstC-RA
Protein status:RH36507.pep: gold
Preliminary Size:369
Sequenced Size:1217

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14919 2001-12-13 Blastp of sequenced clone
CG14919 2002-01-01 Sim4 clustering to Release 2
CG14919 2003-01-01 Sim4 clustering to Release 3
Ast-C 2008-04-29 Release 5.5 accounting
Ast-C 2008-08-15 Release 5.9 accounting
Ast-C 2008-12-18 5.12 accounting

Clone Sequence Records

RH36507.complete Sequence

1217 bp (1217 high quality bases) assembled on 2001-12-13

GenBank Submission: AY070699

> RH36507.complete
GATCGAGTTACCAATTTCCCTTCTTGGCGTTCACATCGATAGAGCGACAA
CAGCAACTAGTTAACGCGACCAAAGGATCAGATCCAAACTTCCCACCAAA
CGAAACTCCACATCAAGGCCGAAAAACTAACACAAATAATTCGCAAATTA
CCGATTGACGAATTTCCCGGCGCCAGATTTTTCTCATTTACCGACGCCAA
TTTCATTGCCGGCGATTCCCAATCTCATCCAGACGAAAAGTATCGTGCAG
AAGCGTTTAAAAATGATGAAATTCGTGCAGATATTATTGTGCTACGGCCT
ACTCCTCACCCTGTTCTTTGCCCTCAGCGAGGCCCGACCTTCGGGTGCCG
AAACAGGACCGGACTCCGATGGACTTGATGGCCAGGACGCGGAGGACGTG
CGAGGCGCCTATGGAGGTGGCTACGATATGCCAGCCCAGGCAATCTATCC
CAATATTCCAATGGATCGGCTGCAGATGCTCTTTGCCCAATACAGACCCA
CCAGTTACAGCGCCTATTTGAGGAGTCCCACCTACGGCAATGTGAATGAA
CTTTATCGGCTGCCCGAGAGCAAACGTCAAGTTAGATACCGGCAGTGCTA
CTTTAATCCCATCTCCTGCTTTAGGAAGTAAGTTCCCGGACAGTGGGAAG
AATATCCGGAACCCAGAGCTCTTGGTTAAACTAACAATTCAAGCATTTCA
ACAAACCAAAACCAAAAAAATAAGCCACAACACAAAGATTAGCATAATGG
ATAAACGAAAATGTTTAGAGCAATTAAACTAAAGCTAAGACTCAACTATA
TCCATATACATATATATACAACTTATCCTTTGAATGTCTACGAAACGTAT
GAAAAAATGTTCGTTCCATTGTAGTTGCCAAAAAAAAAAAATAAATTATG
TACCTATTTATTTGAATATTAGCACAAAAGTTTGAAATTTAAATATTTCG
TTTCTTGATTTACGCTTTGCATATGGTGTGGTAAAATAAAATACAATGCT
TCAATAAGCTATTTATATATTAAAACTGCATTCCTCAATGTGTGTGCTTT
TGTAAATTTAAGTGTCCCAGCTAATGTATAATACAAGTAATTAGAACAAC
AAACAGGAATGCAAACTTGGTGTCATCTAATACCTCCTACACAAAACTAT
ACATGTAAAATATCTTTCTAAATAAAAGTTATAAATATTTACGAATAAAC
TAAAAAAAAAAAAAAAA

RH36507.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:48:42
Subject Length Description Subject Range Query Range Score Percent Strand
Ast-C-RA 1225 Ast-C-RA 1..1203 2..1204 6000 99.9 Plus
Ast-C-RB 1227 Ast-C-RB 6..1205 2..1204 5930 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:54:32
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 11074919..11075618 1201..502 3485 99.9 Minus
chr2L 23010047 chr2L 11079908..11080151 245..2 1220 100 Minus
chr2L 23010047 chr2L 11075681..11075821 501..361 705 100 Minus
chr2L 23010047 chr2L 11075876..11075993 362..245 590 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:27:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:54:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11076162..11076864 1204..502 3500 99.9 Minus
2L 23513712 2L 11081154..11081397 245..2 1220 100 Minus
2L 23513712 2L 11076927..11077067 501..361 705 100 Minus
2L 23513712 2L 11077122..11077239 362..245 590 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:14:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11076162..11076864 1204..502 3500 99.8 Minus
2L 23513712 2L 11081154..11081397 245..2 1220 100 Minus
2L 23513712 2L 11076927..11077067 501..361 705 100 Minus
2L 23513712 2L 11077122..11077239 362..245 590 100 Minus
Blast to na_te.dros performed 2019-03-15 22:54:30
Subject Length Description Subject Range Query Range Score Percent Strand
Porto1 4682 Porto1 DOC5 4682bp 4051..4169 1065..1187 118 61.9 Plus

RH36507.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:55:38 Download gff for RH36507.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 11075681..11075820 362..501 100 <- Minus
chr2L 11075877..11075992 246..361 100 <- Minus
chr2L 11079908..11080151 1..245 99   Minus
chr2L 11074919..11075618 502..1201 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:45:35 Download gff for RH36507.complete
Subject Subject Range Query Range Percent Splice Strand
Ast-C-RA 1..369 263..631 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:17:09 Download gff for RH36507.complete
Subject Subject Range Query Range Percent Splice Strand
Ast-C-RA 1..369 263..631 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:23:00 Download gff for RH36507.complete
Subject Subject Range Query Range Percent Splice Strand
Ast-C-RA 1..369 263..631 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:43:17 Download gff for RH36507.complete
Subject Subject Range Query Range Percent Splice Strand
Ast-C-RA 1..369 263..631 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:38:23 Download gff for RH36507.complete
Subject Subject Range Query Range Percent Splice Strand
AstC-RA 1..369 263..631 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:49:42 Download gff for RH36507.complete
Subject Subject Range Query Range Percent Splice Strand
Ast-C-RA 1..1200 2..1201 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:17:09 Download gff for RH36507.complete
Subject Subject Range Query Range Percent Splice Strand
Ast-C-RA 5..1205 1..1201 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:23:00 Download gff for RH36507.complete
Subject Subject Range Query Range Percent Splice Strand
Ast-C-RA 2..1202 1..1201 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:43:17 Download gff for RH36507.complete
Subject Subject Range Query Range Percent Splice Strand
Ast-C-RA 1..1200 2..1201 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:38:23 Download gff for RH36507.complete
Subject Subject Range Query Range Percent Splice Strand
AstC-RA 2..1202 1..1201 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:55:38 Download gff for RH36507.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11076165..11076864 502..1201 99 <- Minus
2L 11076927..11077066 362..501 100 <- Minus
2L 11077123..11077238 246..361 100 <- Minus
2L 11081154..11081397 1..245 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:55:38 Download gff for RH36507.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11076165..11076864 502..1201 99 <- Minus
2L 11076927..11077066 362..501 100 <- Minus
2L 11077123..11077238 246..361 100 <- Minus
2L 11081154..11081397 1..245 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:55:38 Download gff for RH36507.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11076165..11076864 502..1201 99 <- Minus
2L 11076927..11077066 362..501 100 <- Minus
2L 11077123..11077238 246..361 100 <- Minus
2L 11081154..11081397 1..245 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:23:00 Download gff for RH36507.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11077123..11077238 246..361 100 <- Minus
arm_2L 11081154..11081397 1..245 99   Minus
arm_2L 11076165..11076864 502..1201 99 <- Minus
arm_2L 11076927..11077066 362..501 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:19:24 Download gff for RH36507.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11076165..11076864 502..1201 99 <- Minus
2L 11076927..11077066 362..501 100 <- Minus
2L 11077123..11077238 246..361 100 <- Minus
2L 11081154..11081397 1..245 99   Minus

RH36507.pep Sequence

Translation from 262 to 630

> RH36507.pep
MMKFVQILLCYGLLLTLFFALSEARPSGAETGPDSDGLDGQDAEDVRGAY
GGGYDMPAQAIYPNIPMDRLQMLFAQYRPTSYSAYLRSPTYGNVNELYRL
PESKRQVRYRQCYFNPISCFRK*

RH36507.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:33:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14233-PA 121 GF14233-PA 1..121 1..122 565 86.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:33:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10331-PA 122 GG10331-PA 1..122 1..122 627 97.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:33:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11443-PA 505 GH11443-PA 386..505 1..122 524 79.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:31:28
Subject Length Description Subject Range Query Range Score Percent Strand
AstC-PA 122 CG14919-PA 1..122 1..122 651 100 Plus
AstC-PB 121 CG14919-PB 1..121 1..122 635 99.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:34:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16639-PA 120 GI16639-PA 1..120 1..122 525 81.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:34:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18596-PA 121 GL18596-PA 1..121 1..122 520 88.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:34:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13352-PA 121 GA13352-PA 1..121 1..122 520 88.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:34:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11174-PA 122 GM11174-PA 1..122 1..122 624 96.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:34:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22198-PA 122 GD22198-PA 1..122 1..122 627 97.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:34:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17176-PA 120 GJ17176-PA 1..120 1..122 539 85.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:34:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18450-PA 120 GK18450-PA 1..120 1..122 491 90.2 Plus
Dwil\GK21245-PA 120 GK21245-PA 1..120 1..122 482 88.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:34:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13055-PA 122 GE13055-PA 1..122 1..122 567 95.1 Plus

RH36507.hyp Sequence

Translation from 262 to 630

> RH36507.hyp
MMKFVQILLCYGLLLTLFFALSEARPSGAETGPDSDGLDGQDAEDVRGAY
GGGYDMPAQAIYPNIPMDRLQMLFAQYRPTSYSAYLRSPTYGNVNELYRL
PESKRQVRYRQCYFNPISCFRK*

RH36507.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:44:44
Subject Length Description Subject Range Query Range Score Percent Strand
AstC-PA 122 CG14919-PA 1..122 1..122 651 100 Plus
AstC-PB 121 CG14919-PB 1..121 1..122 635 99.2 Plus